Wall clock time and date at job start Sat Apr 11 2020 04:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21639 * 119.99772 * 359.97438 * 16 15 14 18 18 C 1.47296 * 120.00427 * 179.97438 * 16 15 14 19 19 C 1.35163 * 122.42136 * 179.97438 * 18 16 15 20 20 S 1.71006 * 109.16347 * 180.02562 * 19 18 16 21 21 C 1.75992 * 90.59386 * 0.02562 * 20 19 18 22 22 C 1.47148 * 125.32714 * 180.02562 * 21 20 19 23 23 C 1.36233 * 125.96221 * 0.02562 * 22 21 20 24 24 C 1.40760 * 106.72880 * 180.02562 * 23 22 21 25 25 C 1.34843 * 107.06934 * 0.02562 * 24 23 22 26 26 O 1.34248 * 108.71802 * 359.73689 * 25 24 23 27 27 N 1.30124 * 109.34152 * 359.73433 * 21 20 19 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.08004 * 125.42166 * 359.97438 * 19 18 16 39 39 H 1.08004 * 126.63349 * 359.97438 * 23 22 21 40 40 H 1.07997 * 126.46456 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.64014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4457 -3.7795 18 6 1.6063 0.3475 -4.8656 19 6 1.9256 -0.0566 -6.1153 20 16 1.3097 1.0706 -7.2442 21 6 0.6435 2.0431 -5.9374 22 6 -0.1067 3.2975 -6.1075 23 6 -0.4019 3.8986 -7.2938 24 6 -1.1264 5.0659 -6.9874 25 6 -1.2374 5.1218 -5.6447 26 8 -0.6254 4.0498 -5.1168 27 7 0.9129 1.4760 -4.7976 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 2.4819 -0.9489 -6.3617 39 1 -0.1315 3.5478 -8.2789 40 1 -1.5185 5.7820 -7.6943 41 1 -1.7399 5.8979 -5.0866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753628348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:57 Heat of formation + Delta-G solvation = 8.162877 kcal Electronic energy + Delta-G solvation = -24788.667606 eV Core-core repulsion = 20989.487617 eV Total energy + Delta-G solvation = -3799.179989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52521 -41.61476 -39.83112 -38.24770 -36.02906 -34.20270 -34.12324 -32.85850 -31.91412 -30.03059 -28.26302 -27.49217 -26.24001 -24.70403 -23.60207 -22.87798 -21.76690 -21.39515 -20.54984 -19.85648 -19.13664 -18.48425 -17.82462 -17.25376 -17.10130 -16.79450 -16.62414 -16.25317 -15.95098 -15.49970 -15.37003 -15.03954 -14.80721 -14.58016 -14.15380 -13.96296 -13.85747 -13.65260 -13.61849 -13.45928 -13.11380 -12.97674 -12.77749 -12.23491 -12.22395 -12.04212 -11.80224 -11.69348 -11.38798 -11.31652 -11.14070 -10.94194 -10.88250 -10.48190 -10.17971 -9.10343 -9.00710 -7.95666 -5.24583 -0.94154 -0.17284 0.29257 0.32785 1.17547 1.46816 1.50252 1.56274 1.70340 2.03052 2.10693 2.22180 2.56182 2.73553 3.37618 3.58044 3.66752 3.90768 3.95229 3.99004 4.04721 4.07805 4.15444 4.31234 4.49275 4.55699 4.65451 4.71694 4.74465 4.89183 4.93607 4.98784 5.01758 5.09372 5.23253 5.32535 5.40984 5.48790 5.49247 5.96688 6.18605 6.26609 6.45905 6.98766 7.33013 8.07889 8.32277 9.27806 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002152 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.692314 B =13006.530806 C =14698.573139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.074 0.926 4 C 0.159 3.841 5 N -0.742 5.742 6 C -0.248 4.248 7 H 0.075 0.925 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.976 3.024 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.137 3.863 15 N -0.701 5.701 16 C 0.587 3.413 17 O -0.567 6.567 18 C -0.009 4.009 19 C -0.223 4.223 20 S 0.330 5.670 21 C 0.084 3.916 22 C 0.007 3.993 23 C -0.153 4.153 24 C -0.217 4.217 25 C -0.016 4.016 26 O -0.182 6.182 27 N -0.457 5.457 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.209 0.791 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 6.220 -34.284 35.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.092 0.908 4 C 0.032 3.968 5 N -0.386 5.386 6 C -0.380 4.380 7 H 0.093 0.907 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.013 3.987 15 N -0.351 5.351 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.146 4.146 19 C -0.365 4.365 20 S 0.589 5.411 21 C -0.190 4.190 22 C -0.046 4.046 23 C -0.176 4.176 24 C -0.236 4.236 25 C -0.086 4.086 26 O -0.078 6.078 27 N -0.174 5.174 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.208 0.792 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.226 0.774 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.556 5.536 -34.491 35.113 hybrid contribution 0.034 -0.022 2.217 2.218 sum -3.522 5.514 -32.274 32.930 Atomic orbital electron populations 1.21705 0.94092 1.01996 1.01375 1.21334 0.97045 0.99973 0.93044 0.90804 1.20705 0.96678 0.94136 0.85299 1.42519 1.66948 1.27716 1.01372 1.19614 1.27960 1.05434 0.84944 0.90682 1.25589 1.01650 0.97915 1.01674 1.69813 1.44974 1.17993 1.29230 0.85182 0.77897 0.77185 0.79314 1.20403 1.22027 1.20372 1.21279 1.00043 0.95099 0.82319 1.45838 1.56238 1.27968 1.05063 1.17396 0.78873 0.83792 0.82760 1.90792 1.41992 1.25015 1.86900 1.19927 1.04909 0.95061 0.94688 1.27025 1.05798 1.07566 0.96159 1.83282 1.43053 1.09554 1.05212 1.24710 1.03568 0.98118 0.92598 1.19130 1.05193 0.93003 0.87256 1.22234 1.01211 0.96427 0.97710 1.22170 1.04955 1.00364 0.96067 1.25207 0.98369 0.89818 0.95212 1.84195 1.55918 1.31070 1.36635 1.67128 1.13648 1.08171 1.28409 0.93646 0.91656 0.92552 0.95920 0.95694 0.79190 0.93943 0.91276 0.90928 0.74899 0.77417 0.80113 0.79667 0.74407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.94 71.98 0.64 -3.70 16 2 C -0.09 -3.16 2.46 -10.79 -0.03 -3.18 16 3 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.16 6.56 5.65 86.38 0.49 7.05 16 5 N -0.74 -38.75 5.33 -343.46 -1.83 -40.59 16 6 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 7 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 9 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 10 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.14 4.08 5.06 86.38 0.44 4.51 16 15 N -0.70 -19.92 5.28 -466.47 -2.46 -22.38 16 16 C 0.59 17.40 7.79 86.63 0.68 18.07 16 17 O -0.57 -19.43 16.65 -4.15 -0.07 -19.50 16 18 C -0.01 -0.23 6.64 40.70 0.27 0.04 16 19 C -0.22 -3.92 10.56 67.11 0.71 -3.21 16 20 S 0.33 3.67 22.93 -56.49 -1.30 2.37 16 21 C 0.08 1.64 7.46 87.29 0.65 2.29 16 22 C 0.01 0.13 7.24 24.14 0.17 0.30 16 23 C -0.15 -1.71 10.62 22.42 0.24 -1.47 16 24 C -0.22 -1.95 10.88 22.11 0.24 -1.71 16 25 C -0.02 -0.19 12.08 67.04 0.81 0.62 16 26 O -0.18 -3.70 10.67 -6.65 -0.07 -3.77 16 27 N -0.46 -11.40 10.08 -180.10 -1.82 -13.22 16 28 H 0.04 1.70 7.18 -2.39 -0.02 1.69 16 29 H 0.06 1.82 7.18 -2.39 -0.02 1.80 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.38 20.67 6.85 -92.71 -0.63 20.03 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.41 11.24 7.13 -92.71 -0.66 10.57 16 38 H 0.21 3.03 7.99 -2.91 -0.02 3.00 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.24 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -76.62 371.26 1.17 -75.45 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.21 Total: 30.37 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.62 Total: 2.24 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -5.83 Total: -136.21 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.14 Total: -23.28 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.37 kcal Total: -76.62 1.17 -75.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.617 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds