Wall clock time and date at job start Sat Apr 11 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47209 * 269.99769 * 3 2 1 5 5 H 1.48503 * 109.47302 * 29.99836 * 3 2 1 6 6 H 1.48506 * 109.46703 * 149.99870 * 3 2 1 7 7 C 1.38747 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00386 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00153 * 180.02562 * 9 7 2 11 11 O 1.21206 * 120.00117 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99903 * 179.97438 * 10 9 7 13 13 N 1.46504 * 110.46017 * 34.29715 * 12 10 9 14 14 C 1.34775 * 119.99986 * 302.60989 * 13 12 10 15 15 O 1.21510 * 119.99683 * 359.97438 * 14 13 12 16 16 O 1.34633 * 120.00183 * 179.97438 * 14 13 12 17 17 C 1.45202 * 117.00288 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47000 * 180.02562 * 17 16 14 19 19 C 1.38234 * 120.00257 * 90.00241 * 18 17 16 20 20 C 1.38238 * 119.99675 * 180.27927 * 19 18 17 21 21 C 1.38229 * 120.00124 * 359.45911 * 20 19 18 22 22 C 1.38234 * 119.99957 * 0.56005 * 21 20 19 23 23 C 1.38234 * 119.99503 * 270.01841 * 18 17 16 24 24 C 1.54507 * 110.51041 * 156.90302 * 12 10 9 25 25 C 1.54480 * 104.06429 * 118.78198 * 24 12 10 26 26 O 1.44429 * 104.80219 * 23.97755 * 25 24 12 27 27 C 1.44426 * 105.27464 * 319.49103 * 26 25 24 28 28 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00000 * 122.60237 * 13 12 10 30 30 H 1.08988 * 109.47129 * 59.99812 * 17 16 14 31 31 H 1.09000 * 109.46640 * 299.99803 * 17 16 14 32 32 H 1.08002 * 119.99744 * 359.97438 * 19 18 17 33 33 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 34 34 H 1.07999 * 119.99961 * 180.28392 * 21 20 19 35 35 H 1.08001 * 120.00274 * 179.72697 * 22 21 20 36 36 H 1.07997 * 120.00460 * 0.02562 * 23 18 17 37 37 H 1.08995 * 110.51410 * 237.42343 * 24 12 10 38 38 H 1.09002 * 110.51511 * 0.13726 * 24 12 10 39 39 H 1.09001 * 110.37764 * 142.80718 * 25 24 12 40 40 H 1.08993 * 110.37281 * 265.14933 * 25 24 12 41 41 H 1.08998 * 110.36815 * 281.67740 * 27 26 25 42 42 H 1.09002 * 110.37198 * 159.34235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4458 2.6527 0.7000 6 1 3.5460 1.4401 0.7001 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4965 0.0016 11 8 3.2755 -3.4331 0.0020 12 6 1.3808 -4.8392 0.0023 13 7 0.1383 -4.7812 -0.7717 14 6 -0.8214 -3.8950 -0.4401 15 8 -0.6562 -3.1444 0.5010 16 8 -1.9631 -3.8413 -1.1517 17 6 -2.9527 -2.8628 -0.7374 18 6 -4.1541 -2.9490 -1.6432 19 6 -5.1987 -3.7974 -1.3269 20 6 -6.2981 -3.8807 -2.1608 21 6 -6.3579 -3.1074 -3.3050 22 6 -5.3132 -2.2593 -3.6214 23 6 -4.2113 -2.1799 -2.7904 24 6 2.3213 -5.9263 -0.5643 25 6 2.4943 -6.9200 0.6058 26 8 1.3212 -6.7312 1.4267 27 6 1.0969 -5.3046 1.4476 28 1 -0.4850 0.8400 -0.0004 29 1 0.0064 -5.3806 -1.5229 30 1 -2.5227 -1.8631 -0.7979 31 1 -3.2568 -3.0661 0.2893 32 1 -5.1536 -4.3988 -0.4309 33 1 -7.1122 -4.5468 -1.9160 34 1 -7.2189 -3.1691 -3.9540 35 1 -5.3579 -1.6584 -4.5177 36 1 -3.3950 -1.5176 -3.0378 37 1 1.8618 -6.4206 -1.4202 38 1 3.2820 -5.4931 -0.8426 39 1 2.5352 -7.9431 0.2320 40 1 3.3955 -6.6858 1.1723 41 1 1.7838 -4.8228 2.1433 42 1 0.0643 -5.0868 1.7205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495088310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:15:44 Heat of formation + Delta-G solvation = -155.042333 kcal Electronic energy + Delta-G solvation = -29722.293758 eV Core-core repulsion = 25440.991038 eV Total energy + Delta-G solvation = -4281.302720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55868 -39.50488 -38.76553 -38.19077 -35.93398 -35.13822 -34.04680 -32.07452 -32.01581 -30.91301 -30.63217 -28.71458 -26.20737 -25.48262 -23.38688 -22.57837 -22.45079 -21.59495 -20.85371 -19.19988 -18.28861 -17.62160 -17.33771 -16.89175 -16.26533 -15.98870 -15.74502 -15.40938 -15.14908 -14.96370 -14.73164 -14.37032 -14.25739 -14.00867 -13.43635 -13.33533 -13.17599 -12.81594 -12.54568 -12.35600 -12.22010 -11.99778 -11.65200 -11.55648 -11.49993 -11.17005 -11.07385 -10.99841 -10.95714 -10.41348 -10.29734 -10.04706 -9.88851 -9.68749 -9.65288 -9.15833 -8.93032 -8.85008 -8.50836 -8.48428 -6.31477 -3.98695 1.18788 1.39502 2.60950 3.11303 3.20786 3.26215 3.43851 3.67234 3.80561 3.88660 4.13464 4.45691 4.51995 4.64415 4.85795 4.92408 4.94654 5.02742 5.13280 5.19517 5.28691 5.37691 5.41651 5.49496 5.67273 5.70971 5.72496 5.86453 5.91462 6.00355 6.02693 6.10344 6.11254 6.41410 6.46916 6.66016 6.67676 6.71625 6.88731 6.93268 6.96872 7.43147 7.93374 7.99293 8.72036 9.07138 9.15691 9.93701 10.82571 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.004663 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.001712 B = 6003.026992 C = 8692.610704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.049 3.951 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.389 4.389 8 H 0.091 0.909 9 O -0.161 6.161 10 C 0.381 3.619 11 O -0.560 6.560 12 C 0.187 3.813 13 N -0.703 5.703 14 C 0.633 3.367 15 O -0.490 6.490 16 O -0.373 6.373 17 C 0.129 3.871 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.091 4.091 24 C -0.149 4.149 25 C 0.047 3.953 26 O -0.373 6.373 27 C 0.053 3.947 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -9.889 -4.965 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.157 4.157 3 Si 0.761 3.239 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.064 6.064 10 C 0.226 3.774 11 O -0.459 6.459 12 C 0.100 3.900 13 N -0.366 5.366 14 C 0.385 3.615 15 O -0.372 6.372 16 O -0.289 6.289 17 C 0.055 3.945 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.146 4.146 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.109 4.109 24 C -0.187 4.187 25 C -0.029 4.029 26 O -0.291 6.291 27 C -0.025 4.025 28 H 0.074 0.926 29 H 0.237 0.763 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.318 -9.381 -4.336 13.915 hybrid contribution 0.497 0.868 -0.516 1.126 sum -8.821 -8.513 -4.852 13.184 Atomic orbital electron populations 1.70080 1.05718 1.26894 1.44638 1.25267 0.95727 0.98504 0.96223 0.85801 0.79239 0.80324 0.78547 1.20095 1.20396 1.19210 1.21279 0.92243 0.80627 1.52403 0.89143 1.84243 1.37376 1.12345 1.72456 1.22854 0.86450 0.87191 0.80894 1.90547 1.15152 1.87446 1.52729 1.21157 0.82770 0.92834 0.93279 1.44494 1.15624 1.40283 1.36183 1.18009 0.80168 0.80863 0.82504 1.91230 1.77931 1.39348 1.28651 1.86149 1.26571 1.58377 1.57806 1.21665 0.83911 0.92774 0.96149 1.19700 0.94918 0.97758 0.96318 1.21127 0.93492 0.97247 0.99643 1.21110 0.98297 0.99979 0.95231 1.21172 0.98584 0.96559 0.97148 1.21158 0.94052 0.99402 0.99787 1.21231 0.98034 0.98403 0.93211 1.23211 1.01294 0.94853 0.99366 1.23433 0.89456 0.99462 0.90598 1.89122 1.46136 1.22817 1.71041 1.23745 1.03901 0.80868 0.93980 0.92556 0.76285 0.88643 0.90822 0.85858 0.86053 0.86210 0.85951 0.85396 0.89471 0.87095 0.88659 0.91500 0.90587 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.12 13.67 55.48 0.76 -23.36 16 2 C 0.05 1.38 5.49 -17.53 -0.10 1.29 16 3 Si 0.94 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.39 -11.64 9.65 30.92 0.30 -11.34 16 8 H 0.09 2.74 6.86 -52.49 -0.36 2.38 16 9 O -0.16 -4.61 5.76 -28.94 -0.17 -4.78 16 10 C 0.38 9.54 6.64 36.00 0.24 9.78 16 11 O -0.56 -14.89 14.82 -19.05 -0.28 -15.17 16 12 C 0.19 3.58 0.99 -131.40 -0.13 3.45 16 13 N -0.70 -12.66 5.16 -52.08 -0.27 -12.93 16 14 C 0.63 13.19 7.53 54.05 0.41 13.60 16 15 O -0.49 -12.12 11.98 -27.52 -0.33 -12.45 16 16 O -0.37 -6.96 10.25 -40.30 -0.41 -7.38 16 17 C 0.13 2.23 5.60 36.01 0.20 2.44 16 18 C -0.09 -1.26 5.52 -104.62 -0.58 -1.83 16 19 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 20 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 21 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 23 C -0.09 -1.24 9.70 -39.58 -0.38 -1.63 16 24 C -0.15 -2.20 6.40 -25.16 -0.16 -2.36 16 25 C 0.05 0.63 7.63 37.93 0.29 0.92 16 26 O -0.37 -6.00 11.65 -35.23 -0.41 -6.41 16 27 C 0.05 0.97 6.49 37.93 0.25 1.21 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 5.83 8.25 -40.82 -0.34 5.49 16 30 H 0.10 1.91 8.08 -51.94 -0.42 1.49 16 31 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.02 7.53 -51.93 -0.39 0.63 16 38 H 0.11 1.78 6.77 -51.93 -0.35 1.43 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 42 H 0.11 2.06 6.81 -51.93 -0.35 1.71 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -35.30 360.77 -7.08 -42.38 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.13 Total: 9.46 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.24 Total: 8.73 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.49 Total: -36.29 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.60 Total: -46.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.30 -7.08 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495088310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.662 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds