Wall clock time and date at job start Sat Apr 11 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 117.00197 * 2 1 4 4 O 1.20824 * 119.99429 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00290 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47358 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47103 * 180.02562 * 6 5 3 8 8 C 1.37093 * 120.00096 * 267.72781 * 7 6 5 9 9 H 1.08002 * 120.00018 * 146.47631 * 8 7 6 10 10 C 1.38951 * 120.00331 * 326.48261 * 8 7 6 11 11 N 1.31413 * 120.00077 * 334.04888 * 10 8 7 12 12 Si 1.86802 * 120.00188 * 154.04734 * 10 8 7 13 13 H 1.48497 * 109.46944 * 84.99895 * 12 10 8 14 14 H 1.48506 * 109.46824 * 204.99831 * 12 10 8 15 15 H 1.48500 * 109.46957 * 324.99824 * 12 10 8 16 16 C 1.34776 * 119.99847 * 87.73372 * 7 6 5 17 17 O 1.21293 * 119.99945 * 359.97438 * 16 7 6 18 18 C 1.50706 * 119.99999 * 179.97438 * 16 7 6 19 19 C 1.54886 * 129.08813 * 299.94038 * 18 16 7 20 20 C 1.57163 * 77.91641 * 180.16134 * 19 18 16 21 21 C 1.53002 * 129.25395 * 179.19421 * 20 19 18 22 22 F 1.39903 * 109.46896 * 301.28716 * 21 20 19 23 23 F 1.39896 * 109.47249 * 61.28235 * 21 20 19 24 24 F 1.39896 * 109.47201 * 181.28628 * 21 20 19 25 25 C 1.54409 * 129.01271 * 179.97438 * 18 16 7 26 26 C 1.54886 * 129.08809 * 60.05779 * 18 16 7 27 27 H 1.09005 * 109.46923 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47211 * 300.00075 * 1 2 3 30 30 H 1.09003 * 109.47353 * 300.00224 * 5 3 2 31 31 H 1.09004 * 109.47035 * 60.00106 * 5 3 2 32 32 H 1.08993 * 109.46999 * 300.00408 * 6 5 3 33 33 H 1.09004 * 109.47011 * 60.00029 * 6 5 3 34 34 H 0.96995 * 120.00536 * 179.97438 * 11 10 8 35 35 H 1.08999 * 114.97448 * 291.95440 * 19 18 16 36 36 H 1.08997 * 114.98141 * 67.12947 * 19 18 16 37 37 H 1.08993 * 114.93404 * 293.13241 * 25 18 16 38 38 H 1.09000 * 114.93351 * 68.09584 * 25 18 16 39 39 H 1.08996 * 114.98174 * 292.87230 * 26 18 16 40 40 H 1.08998 * 114.97956 * 68.04413 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1453 2.9011 1.1874 9 1 7.1161 2.4382 1.2853 10 6 5.5877 3.5802 2.2638 11 7 4.7153 4.5404 2.0543 12 14 6.0780 3.1281 4.0087 13 1 7.3201 3.8537 4.3775 14 1 4.9876 3.5067 4.9431 15 1 6.3161 1.6648 4.0926 16 6 6.1384 2.8083 -1.1653 17 8 5.5349 2.7350 -2.2148 18 6 7.6434 2.8877 -1.1654 19 6 8.5626 4.0023 -0.6070 20 6 9.6036 2.9735 -1.1797 21 6 11.1313 3.0533 -1.2028 22 9 11.5278 4.2010 -1.8978 23 9 11.6152 3.1118 0.1085 24 9 11.6479 1.9203 -1.8404 25 6 8.6165 2.8912 -2.3643 26 6 8.6723 1.9233 -0.5249 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9557 0.7809 0.8908 31 1 3.9564 0.7806 -0.8892 32 1 3.6107 3.2364 -0.8888 33 1 3.6101 3.2360 0.8911 34 1 4.3257 5.0142 2.8057 35 1 8.5160 4.9495 -1.1443 36 1 8.5492 4.1096 0.4776 37 1 8.6531 1.9597 -2.9290 38 1 8.5721 3.7829 -2.9895 39 1 8.6657 1.9008 0.5648 40 1 8.7278 0.9371 -0.9858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:13:51 Heat of formation + Delta-G solvation = -166.740641 kcal Electronic energy + Delta-G solvation = -29876.590373 eV Core-core repulsion = 25052.923636 eV Total energy + Delta-G solvation = -4823.666737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93991 -47.49508 -47.47480 -41.71767 -40.09620 -38.15229 -36.21494 -35.04881 -32.09977 -30.86169 -28.03206 -27.48203 -25.73764 -25.49064 -25.09730 -24.58532 -22.33355 -20.43096 -19.75581 -18.61802 -18.27082 -18.26030 -17.57660 -17.24516 -16.30358 -16.22450 -15.99776 -15.47477 -14.68259 -14.46007 -14.42640 -14.30782 -14.11998 -13.92631 -13.90680 -13.68048 -13.65375 -13.64873 -13.62728 -13.16560 -12.76038 -12.30514 -12.12599 -11.86009 -11.48067 -11.37971 -11.29410 -11.22182 -11.02012 -10.99619 -10.71830 -10.58874 -10.52908 -10.17105 -10.10001 -10.01146 -9.95227 -9.28287 -8.68610 -7.77152 -6.55678 -4.19969 2.61044 2.77117 2.98181 3.00271 3.14615 3.16371 3.48033 3.75267 3.80852 3.86377 3.98405 4.40518 4.66176 4.74394 4.81175 4.83150 4.89150 5.11490 5.20242 5.24354 5.27166 5.59252 5.72186 5.78239 5.79245 5.84956 5.94844 6.03065 6.12061 6.15966 6.20416 6.32442 6.45060 6.67305 6.76871 7.18869 7.33880 7.66388 8.11768 8.18811 8.89906 9.29326 9.71469 10.46027 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003668 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.539170 B = 7631.615477 C = 8849.825797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.127 3.873 7 N -0.424 5.424 8 C -0.355 4.355 9 H 0.099 0.901 10 C 0.049 3.951 11 N -0.842 5.842 12 Si 0.903 3.097 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.523 3.477 17 O -0.594 6.594 18 C -0.103 4.103 19 C -0.062 4.062 20 C -0.239 4.239 21 C 0.522 3.478 22 F -0.180 7.180 23 F -0.178 7.178 24 F -0.181 7.181 25 C -0.071 4.071 26 C -0.074 4.074 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.273 0.727 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -6.001 -1.685 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.003 3.997 7 N -0.140 5.140 8 C -0.482 4.482 9 H 0.116 0.884 10 C -0.159 4.159 11 N -0.476 5.476 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.311 3.689 17 O -0.480 6.480 18 C -0.106 4.106 19 C -0.100 4.100 20 C -0.240 4.240 21 C 0.467 3.533 22 F -0.161 7.161 23 F -0.159 7.159 24 F -0.163 7.163 25 C -0.109 4.109 26 C -0.111 4.111 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.525 -5.572 -2.063 6.908 hybrid contribution 0.393 -0.083 1.020 1.097 sum 3.918 -5.655 -1.043 6.958 Atomic orbital electron populations 1.23173 0.77295 1.03067 1.02360 1.86537 1.22794 1.34355 1.84633 1.24036 0.92355 0.80922 0.71766 1.90655 1.67266 1.36226 1.45042 1.21876 0.85969 1.03124 1.05393 1.21203 0.81671 0.91248 1.05586 1.43317 1.04461 1.61554 1.04691 1.19525 1.05300 1.35410 0.87979 0.88378 1.25327 0.96866 0.93346 1.00363 1.69987 1.28307 1.16522 1.32784 0.86334 0.78680 0.79666 0.82465 1.19889 1.20629 1.19094 1.18433 0.85245 0.81284 0.83925 1.90570 1.69152 1.56320 1.31914 1.23289 0.92560 0.98352 0.96405 1.24360 0.88223 0.95178 1.02214 1.25532 0.87971 1.05711 1.04809 1.18569 0.88203 0.73207 0.73275 1.93174 1.92288 1.51031 1.79625 1.93183 1.89771 1.96061 1.36919 1.93168 1.88773 1.52041 1.82279 1.23706 0.90173 1.02867 0.94163 1.24038 0.90150 0.95745 1.01200 0.92152 0.88594 0.92141 0.87601 0.88291 0.91417 0.86570 0.91632 0.90170 0.88187 0.90041 0.89885 0.88518 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.75 10.57 -39.27 -0.41 -6.17 16 3 C 0.47 8.61 7.96 36.00 0.29 8.89 16 4 O -0.51 -10.63 15.73 -18.75 -0.29 -10.92 16 5 C -0.12 -2.35 6.13 -27.89 -0.17 -2.52 16 6 C 0.13 2.86 4.26 -4.04 -0.02 2.84 16 7 N -0.42 -9.64 2.55 -114.81 -0.29 -9.93 16 8 C -0.36 -7.95 8.08 -14.93 -0.12 -8.07 16 9 H 0.10 2.04 4.88 -52.49 -0.26 1.79 16 10 C 0.05 1.13 4.85 -17.47 -0.08 1.05 16 11 N -0.84 -20.84 11.51 55.50 0.64 -20.20 16 12 Si 0.90 17.88 29.62 -169.99 -5.04 12.84 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 16 C 0.52 11.71 7.74 -10.98 -0.08 11.62 16 17 O -0.59 -14.74 16.71 5.55 0.09 -14.64 16 18 C -0.10 -1.88 2.43 -172.28 -0.42 -2.30 16 19 C -0.06 -1.03 7.53 -24.71 -0.19 -1.22 16 20 C -0.24 -3.51 3.03 -169.86 -0.51 -4.03 16 21 C 0.52 7.27 3.63 37.16 0.13 7.40 16 22 F -0.18 -2.52 17.32 2.25 0.04 -2.49 16 23 F -0.18 -2.54 17.32 2.25 0.04 -2.50 16 24 F -0.18 -2.49 17.32 2.25 0.04 -2.45 16 25 C -0.07 -1.11 7.78 -26.71 -0.21 -1.32 16 26 C -0.07 -1.14 7.25 -26.00 -0.19 -1.33 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.07 1.65 7.45 -51.93 -0.39 1.26 16 33 H 0.12 2.85 5.39 -51.93 -0.28 2.57 16 34 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 36 H 0.10 1.72 7.45 -51.93 -0.39 1.33 16 37 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 38 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 39 H 0.10 1.49 6.25 -51.93 -0.32 1.16 16 40 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -27.54 353.31 -4.90 -32.44 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.53 Total: 6.16 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -0.51 Total: 12.53 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.35 Total: -30.13 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.62 Total: -31.73 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.12 Total: -7.43 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.04 Total: 12.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.54 -4.90 -32.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.300 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds