Wall clock time and date at job start Sat Apr 11 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 117.00197 * 2 1 4 4 O 1.20824 * 119.99429 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00290 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47358 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47103 * 180.02562 * 6 5 3 8 8 C 1.37093 * 120.00096 * 267.72781 * 7 6 5 9 9 H 1.08002 * 120.00018 * 146.47631 * 8 7 6 10 10 C 1.38951 * 120.00331 * 326.48261 * 8 7 6 11 11 N 1.31413 * 120.00077 * 334.04888 * 10 8 7 12 12 Si 1.86802 * 120.00188 * 154.04734 * 10 8 7 13 13 H 1.48497 * 109.46944 * 84.99895 * 12 10 8 14 14 H 1.48506 * 109.46824 * 204.99831 * 12 10 8 15 15 H 1.48500 * 109.46957 * 324.99824 * 12 10 8 16 16 C 1.34776 * 119.99847 * 87.73372 * 7 6 5 17 17 O 1.21293 * 119.99945 * 359.97438 * 16 7 6 18 18 C 1.50706 * 119.99999 * 179.97438 * 16 7 6 19 19 C 1.54886 * 129.08813 * 299.94038 * 18 16 7 20 20 C 1.57163 * 77.91641 * 180.16134 * 19 18 16 21 21 C 1.53002 * 129.25395 * 179.19421 * 20 19 18 22 22 F 1.39903 * 109.46896 * 301.28716 * 21 20 19 23 23 F 1.39896 * 109.47249 * 61.28235 * 21 20 19 24 24 F 1.39896 * 109.47201 * 181.28628 * 21 20 19 25 25 C 1.54409 * 129.01271 * 179.97438 * 18 16 7 26 26 C 1.54886 * 129.08809 * 60.05779 * 18 16 7 27 27 H 1.09005 * 109.46923 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47211 * 300.00075 * 1 2 3 30 30 H 1.09003 * 109.47353 * 300.00224 * 5 3 2 31 31 H 1.09004 * 109.47035 * 60.00106 * 5 3 2 32 32 H 1.08993 * 109.46999 * 300.00408 * 6 5 3 33 33 H 1.09004 * 109.47011 * 60.00029 * 6 5 3 34 34 H 0.96995 * 120.00536 * 179.97438 * 11 10 8 35 35 H 1.08999 * 114.97448 * 291.95440 * 19 18 16 36 36 H 1.08997 * 114.98141 * 67.12947 * 19 18 16 37 37 H 1.08993 * 114.93404 * 293.13241 * 25 18 16 38 38 H 1.09000 * 114.93351 * 68.09584 * 25 18 16 39 39 H 1.08996 * 114.98174 * 292.87230 * 26 18 16 40 40 H 1.08998 * 114.97956 * 68.04413 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1453 2.9011 1.1874 9 1 7.1161 2.4382 1.2853 10 6 5.5877 3.5802 2.2638 11 7 4.7153 4.5404 2.0543 12 14 6.0780 3.1281 4.0087 13 1 7.3201 3.8537 4.3775 14 1 4.9876 3.5067 4.9431 15 1 6.3161 1.6648 4.0926 16 6 6.1384 2.8083 -1.1653 17 8 5.5349 2.7350 -2.2148 18 6 7.6434 2.8877 -1.1654 19 6 8.5626 4.0023 -0.6070 20 6 9.6036 2.9735 -1.1797 21 6 11.1313 3.0533 -1.2028 22 9 11.5278 4.2010 -1.8978 23 9 11.6152 3.1118 0.1085 24 9 11.6479 1.9203 -1.8404 25 6 8.6165 2.8912 -2.3643 26 6 8.6723 1.9233 -0.5249 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9557 0.7809 0.8908 31 1 3.9564 0.7806 -0.8892 32 1 3.6107 3.2364 -0.8888 33 1 3.6101 3.2360 0.8911 34 1 4.3257 5.0142 2.8057 35 1 8.5160 4.9495 -1.1443 36 1 8.5492 4.1096 0.4776 37 1 8.6531 1.9597 -2.9290 38 1 8.5721 3.7829 -2.9895 39 1 8.6657 1.9008 0.5648 40 1 8.7278 0.9371 -0.9858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:13:50 Heat of formation + Delta-G solvation = -180.183214 kcal Electronic energy + Delta-G solvation = -29877.173286 eV Core-core repulsion = 25052.923636 eV Total energy + Delta-G solvation = -4824.249651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.05338 -48.59876 -48.58916 -43.04729 -41.53986 -39.86689 -37.64092 -36.82465 -33.84190 -32.52242 -29.26858 -28.64453 -27.14241 -26.79634 -26.68826 -26.05603 -23.78606 -21.83663 -21.29244 -20.20294 -19.37814 -19.37249 -19.01692 -18.61598 -17.77487 -17.62807 -17.52069 -17.04936 -16.33557 -15.88929 -15.64947 -15.55989 -15.52794 -15.18628 -15.09269 -15.02875 -15.01566 -14.75431 -14.75224 -14.62583 -14.24045 -13.82471 -13.65898 -13.23783 -12.95204 -12.80119 -12.77033 -12.60616 -12.44988 -12.42941 -12.16647 -12.11419 -11.91333 -11.78347 -11.62130 -11.33333 -11.27591 -11.01437 -10.43486 -9.57767 -8.32088 -6.00776 1.13018 1.41386 1.52599 1.58589 1.62177 1.65377 1.86121 2.32499 2.52164 2.61218 2.66509 2.91629 3.05039 3.36523 3.47644 3.62484 3.69479 3.71410 3.83690 4.09354 4.23202 4.30952 4.31821 4.43748 4.55845 4.59457 4.60852 4.69586 4.73070 4.85853 4.89082 4.95640 5.00093 5.10543 5.26422 5.39428 5.57114 5.90843 6.41012 6.69608 7.12441 7.54014 7.96162 8.70865 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.003668 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.539170 B = 7631.615477 C = 8849.825797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.131 3.869 7 N -0.433 5.433 8 C -0.355 4.355 9 H 0.116 0.884 10 C 0.010 3.990 11 N -0.882 5.882 12 Si 0.965 3.035 13 H -0.269 1.269 14 H -0.291 1.291 15 H -0.253 1.253 16 C 0.513 3.487 17 O -0.628 6.628 18 C -0.138 4.138 19 C -0.064 4.064 20 C -0.213 4.213 21 C 0.530 3.470 22 F -0.179 7.179 23 F -0.177 7.177 24 F -0.176 7.176 25 C -0.065 4.065 26 C -0.062 4.062 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.271 0.729 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -7.919 -1.110 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.153 4.153 6 C 0.007 3.993 7 N -0.149 5.149 8 C -0.482 4.482 9 H 0.134 0.866 10 C -0.195 4.195 11 N -0.519 5.519 12 Si 0.788 3.212 13 H -0.194 1.194 14 H -0.217 1.217 15 H -0.176 1.176 16 C 0.303 3.697 17 O -0.516 6.516 18 C -0.141 4.141 19 C -0.102 4.102 20 C -0.215 4.215 21 C 0.476 3.524 22 F -0.160 7.160 23 F -0.159 7.159 24 F -0.157 7.157 25 C -0.102 4.102 26 C -0.100 4.100 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.083 -7.524 -1.483 9.200 hybrid contribution -0.171 0.517 0.775 0.947 sum 4.911 -7.007 -0.709 8.586 Atomic orbital electron populations 1.23579 0.74798 1.05866 1.02430 1.86507 1.25123 1.32350 1.83843 1.23851 0.92161 0.81274 0.71037 1.90646 1.67877 1.37505 1.46746 1.21653 0.86751 1.00506 1.06357 1.20965 0.82082 0.93370 1.02897 1.43537 1.04462 1.61574 1.05277 1.19914 1.05803 1.34829 0.87627 0.86641 1.26096 0.96795 0.92960 1.03639 1.70106 1.30138 1.18053 1.33553 0.85383 0.77932 0.79981 0.77886 1.19416 1.21678 1.17636 1.19078 0.87148 0.80287 0.83204 1.90531 1.70486 1.57679 1.32899 1.23237 0.90541 1.00850 0.99464 1.24357 0.88673 0.95343 1.01809 1.25221 0.88353 1.04161 1.03735 1.18298 0.87386 0.73364 0.73328 1.93185 1.92193 1.51041 1.79600 1.93192 1.89673 1.96069 1.36943 1.93186 1.88591 1.51748 1.82167 1.23707 0.88953 1.03758 0.93801 1.24009 0.88361 0.96223 1.01369 0.92173 0.84407 0.92113 0.86058 0.87675 0.94538 0.88672 0.91943 0.90147 0.88901 0.88661 0.89689 0.88281 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.92 10.57 -51.46 -0.54 -11.47 16 3 C 0.47 17.54 7.96 71.23 0.57 18.11 16 4 O -0.54 -23.29 15.73 21.97 0.35 -22.94 16 5 C -0.11 -4.33 6.13 29.84 0.18 -4.15 16 6 C 0.13 6.15 4.26 86.38 0.37 6.52 16 7 N -0.43 -20.02 2.55 -635.53 -1.62 -21.64 16 8 C -0.36 -15.79 8.08 84.04 0.68 -15.11 16 9 H 0.12 4.64 4.88 -2.91 -0.01 4.63 16 10 C 0.01 0.45 4.85 84.93 0.41 0.86 16 11 N -0.88 -44.92 11.51 21.66 0.25 -44.67 16 12 Si 0.96 36.13 29.62 68.60 2.03 38.16 16 13 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 14 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 15 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 16 C 0.51 23.29 7.74 87.66 0.68 23.96 16 17 O -0.63 -31.99 16.71 -3.07 -0.05 -32.04 16 18 C -0.14 -4.92 2.43 -63.69 -0.15 -5.08 16 19 C -0.06 -2.06 7.53 31.90 0.24 -1.82 16 20 C -0.21 -5.75 3.03 -62.12 -0.19 -5.94 16 21 C 0.53 13.27 3.63 71.98 0.26 13.53 16 22 F -0.18 -4.57 17.32 44.97 0.78 -3.79 16 23 F -0.18 -4.56 17.32 44.97 0.78 -3.78 16 24 F -0.18 -4.25 17.32 44.97 0.78 -3.47 16 25 C -0.06 -1.89 7.78 30.61 0.24 -1.65 16 26 C -0.06 -1.76 7.25 31.07 0.23 -1.54 16 27 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 28 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.34 16 30 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 31 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.04 1.89 7.45 -2.39 -0.02 1.87 16 33 H 0.10 4.90 5.39 -2.39 -0.01 4.89 16 34 H 0.27 13.24 8.31 -92.71 -0.77 12.46 16 35 H 0.08 2.53 7.91 -2.39 -0.02 2.51 16 36 H 0.09 3.09 7.45 -2.39 -0.02 3.08 16 37 H 0.09 2.53 7.94 -2.39 -0.02 2.51 16 38 H 0.08 2.44 7.91 -2.39 -0.02 2.42 16 39 H 0.10 2.77 6.25 -2.39 -0.01 2.76 16 40 H 0.10 2.42 7.93 -2.39 -0.02 2.40 16 Total: -1.00 -60.52 353.31 8.55 -51.96 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.10 Total: 24.21 kcal Atomic # 6 Polarization: 24.77 SS G_CDS: 4.71 Total: 29.47 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.37 Total: -66.32 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -0.25 Total: -66.45 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 2.34 Total: -11.04 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -60.52 8.55 -51.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.219 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds