Wall clock time and date at job start Sat Apr 11 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00189 * 2 1 4 4 O 1.21719 * 120.00199 * 186.27087 * 3 2 1 5 5 C 1.46499 * 119.99643 * 6.26679 * 3 2 1 6 6 C 1.36112 * 125.70799 * 187.74540 * 5 3 2 7 7 C 1.42233 * 107.62344 * 179.85547 * 6 5 3 8 8 C 1.45591 * 140.78025 * 180.02562 * 7 6 5 9 9 C 1.31807 * 114.63394 * 180.37491 * 8 7 6 10 10 S 1.75351 * 111.24443 * 359.97438 * 9 8 7 11 11 C 1.38176 * 106.99204 * 0.41155 * 7 6 5 12 12 N 1.37457 * 108.17249 * 359.75345 * 11 7 6 13 13 H 0.96991 * 125.68614 * 179.97438 * 12 11 7 14 14 C 1.46501 * 119.99720 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.63900 * 178.30665 * 14 2 1 16 16 C 1.54318 * 110.72263 * 301.44961 * 14 2 1 17 17 N 1.47023 * 107.27552 * 140.73594 * 16 14 2 18 18 C 1.36929 * 125.65307 * 181.07924 * 17 16 14 19 19 H 1.07999 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99662 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99715 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47359 * 60.00027 * 22 20 18 24 24 H 1.48503 * 109.46916 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47271 * 299.99414 * 22 20 18 26 26 C 1.47434 * 108.69655 * 1.06151 * 17 16 14 27 27 C 1.54909 * 104.83277 * 335.86890 * 26 17 16 28 28 H 1.09000 * 111.00279 * 278.93485 * 27 26 17 29 29 O 1.42901 * 111.00130 * 155.08915 * 27 26 17 30 30 H 1.08998 * 109.46526 * 275.80484 * 1 2 3 31 31 H 1.08996 * 109.47345 * 35.80663 * 1 2 3 32 32 H 1.08997 * 109.46904 * 155.80657 * 1 2 3 33 33 H 1.07999 * 126.19018 * 359.97438 * 6 5 3 34 34 H 1.08004 * 122.67967 * 0.34628 * 8 7 6 35 35 H 1.08006 * 124.37795 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.88375 * 21.31620 * 16 14 2 37 37 H 1.09009 * 110.01175 * 260.22686 * 16 14 2 38 38 H 0.97004 * 119.99637 * 180.02562 * 21 20 18 39 39 H 1.08999 * 110.36318 * 94.71381 * 26 17 16 40 40 H 1.09000 * 110.35994 * 217.03008 * 26 17 16 41 41 H 0.96695 * 114.00206 * 61.44906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3507 1.1703 -0.1151 5 6 1.4130 2.4321 0.1385 6 6 1.9508 3.6754 0.0058 7 6 0.9080 4.6201 0.2133 8 6 0.6770 6.0573 0.2406 9 6 -0.5649 6.4091 0.5074 10 16 -1.5845 5.0039 0.7534 11 6 -0.2417 3.9008 0.4779 12 7 0.0696 2.5627 0.4317 13 1 -0.5507 1.8320 0.5805 14 6 2.1975 -1.2688 -0.0006 15 1 3.2726 -1.0917 -0.0306 16 6 1.8183 -2.1187 1.2304 17 7 1.7366 -3.5179 0.7864 18 6 1.4049 -4.5873 1.5747 19 1 1.1752 -4.4374 2.6193 20 6 1.3640 -5.8640 1.0312 21 7 1.6435 -6.0465 -0.2418 22 14 0.9108 -7.3226 2.1065 23 1 -0.4527 -7.1246 2.6604 24 1 0.9385 -8.5648 1.2931 25 1 1.8858 -7.4382 3.2207 26 6 2.0706 -3.5788 -0.6483 27 6 1.7549 -2.1621 -1.1894 28 1 0.6892 -2.0483 -1.3881 29 8 2.5251 -1.8771 -2.3589 30 1 -0.3632 0.1039 1.0224 31 1 -0.3634 0.8334 -0.6012 32 1 -0.3633 -0.9374 -0.4211 33 1 2.9824 3.9033 -0.2186 34 1 1.4607 6.7775 0.0573 35 1 -0.9099 7.4309 0.5669 36 1 0.8528 -1.7965 1.6201 37 1 2.5815 -2.0187 2.0022 38 1 1.6146 -6.9386 -0.6217 39 1 3.1275 -3.8094 -0.7822 40 1 1.4525 -4.3232 -1.1503 41 1 2.3524 -2.4751 -3.0989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047477607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:42 Heat of formation + Delta-G solvation = 50.228344 kcal Electronic energy + Delta-G solvation = -26489.009888 eV Core-core repulsion = 22691.653995 eV Total energy + Delta-G solvation = -3797.355893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.64819 -39.60846 -37.81329 -35.81658 -35.22621 -34.82636 -32.05418 -30.72367 -29.39959 -28.18941 -27.52631 -26.80876 -24.67092 -23.28815 -22.75684 -20.59329 -20.35731 -19.84314 -19.59696 -18.42679 -17.21124 -17.17246 -16.43186 -15.94485 -15.62790 -15.31067 -15.02980 -14.71026 -14.48733 -14.14066 -13.89709 -13.69135 -13.37624 -13.28649 -12.98094 -12.85118 -12.54905 -12.23558 -11.98998 -11.88192 -11.79675 -11.53538 -11.32977 -11.07870 -11.05874 -10.88408 -10.28585 -10.07499 -10.02734 -9.78812 -9.68615 -9.36446 -8.80187 -8.58890 -8.48317 -7.87012 -7.02466 -5.80180 -3.23871 0.84956 1.11582 1.24094 1.74697 2.69304 2.79545 3.04243 3.32324 3.34300 3.37454 3.38287 4.25396 4.36025 4.54838 4.62456 4.72351 4.80598 5.01730 5.20624 5.26417 5.34053 5.35270 5.37131 5.49093 5.52951 5.67689 5.79015 5.87822 5.92311 6.02148 6.06029 6.23877 6.33172 6.49073 6.51612 6.75686 6.95310 7.25059 7.34268 7.44721 7.63293 8.08006 8.10883 8.19504 9.04673 9.65162 10.27021 11.23618 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002619 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.394301 B =10689.859535 C =11360.167013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.597 5.597 3 C 0.588 3.412 4 O -0.518 6.518 5 C 0.001 3.999 6 C -0.072 4.072 7 C -0.164 4.164 8 C -0.068 4.068 9 C -0.224 4.224 10 S 0.127 5.873 11 C -0.015 4.015 12 N -0.530 5.530 13 H 0.425 0.575 14 C 0.137 3.863 15 H 0.116 0.884 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.919 3.081 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.128 3.872 27 C 0.064 3.936 28 H 0.060 0.940 29 O -0.562 6.562 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.255 0.745 39 H 0.027 0.973 40 H 0.113 0.887 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 21.348 -1.230 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.329 5.329 3 C 0.376 3.624 4 O -0.393 6.393 5 C -0.112 4.112 6 C -0.100 4.100 7 C -0.176 4.176 8 C -0.099 4.099 9 C -0.358 4.358 10 S 0.381 5.619 11 C -0.244 4.244 12 N -0.140 5.140 13 H 0.272 0.728 14 C 0.034 3.966 15 H 0.134 0.866 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.355 4.355 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.749 3.251 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.002 3.998 27 C 0.003 3.997 28 H 0.078 0.922 29 O -0.367 6.367 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.187 0.813 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.130 0.870 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.205 21.224 -0.577 22.762 hybrid contribution 0.583 -1.359 0.011 1.479 sum -7.622 19.865 -0.566 21.284 Atomic orbital electron populations 1.22128 0.80886 1.04482 1.01280 1.47641 1.06284 1.06086 1.72935 1.16986 0.86705 0.81689 0.77052 1.90866 1.12680 1.86145 1.49633 1.20092 0.82629 0.95400 1.13079 1.20732 0.98836 0.88355 1.02032 1.19397 0.93235 0.92647 1.12329 1.20340 0.96745 0.92843 0.99931 1.24846 0.96932 1.01703 1.12312 1.83895 1.06841 0.93609 1.77592 1.23652 1.00549 0.88516 1.11724 1.42656 1.09115 1.04692 1.57582 0.72816 1.22231 0.98270 0.80898 0.95221 0.86601 1.21539 0.98474 0.85960 0.93614 1.44261 1.81248 1.00723 1.06364 1.19032 1.39455 0.84769 0.92245 0.90227 1.24811 1.01588 0.97492 0.96500 1.69726 1.55026 1.21177 1.11142 0.86095 0.78290 0.81630 0.79130 1.21071 1.21457 1.21037 1.22605 1.00060 0.91882 0.85261 1.23743 0.93450 0.97685 0.84810 0.92239 1.86452 1.67312 1.58840 1.24090 0.92097 0.91168 0.88584 0.82542 0.83778 0.81322 0.95176 0.94830 0.93432 0.95534 0.86951 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 7.53 59.85 0.45 1.10 16 2 N -0.60 -9.39 2.89 -173.44 -0.50 -9.89 16 3 C 0.59 9.76 7.62 -12.93 -0.10 9.66 16 4 O -0.52 -10.32 16.25 5.17 0.08 -10.24 16 5 C 0.00 0.01 6.55 -82.47 -0.54 -0.53 16 6 C -0.07 -0.94 10.59 -38.81 -0.41 -1.36 16 7 C -0.16 -1.93 6.80 -105.46 -0.72 -2.65 16 8 C -0.07 -0.62 10.42 -38.55 -0.40 -1.02 16 9 C -0.22 -1.74 11.03 28.84 0.32 -1.42 16 10 S 0.13 1.09 23.24 -107.50 -2.50 -1.41 16 11 C -0.02 -0.17 8.41 -15.05 -0.13 -0.30 16 12 N -0.53 -6.03 5.13 -7.94 -0.04 -6.07 16 13 H 0.43 3.94 4.88 -40.82 -0.20 3.75 16 14 C 0.14 2.58 3.08 -66.10 -0.20 2.38 16 15 H 0.12 2.46 7.00 -51.93 -0.36 2.09 16 16 C 0.13 2.69 6.88 -3.07 -0.02 2.66 16 17 N -0.60 -14.69 3.39 -170.07 -0.58 -15.26 16 18 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -25.72 10.09 55.49 0.56 -25.16 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.13 2.97 5.62 -2.52 -0.01 2.96 16 27 C 0.06 1.21 3.94 -24.58 -0.10 1.11 16 28 H 0.06 1.05 6.17 -51.93 -0.32 0.73 16 29 O -0.56 -10.21 13.47 -35.23 -0.47 -10.68 16 30 H 0.06 0.60 7.35 -51.93 -0.38 0.22 16 31 H 0.07 0.69 5.69 -51.93 -0.30 0.40 16 32 H 0.10 1.17 6.15 -51.93 -0.32 0.85 16 33 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 37 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 41 H 0.38 5.27 9.11 45.56 0.42 5.69 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -32.85 345.48 -9.18 -42.03 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.80 Total: 9.15 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.11 Total: 6.06 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.56 Total: -56.38 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.39 Total: -20.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.85 -9.18 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047477607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.257 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds