Wall clock time and date at job start Sat Apr 11 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00189 * 2 1 4 4 O 1.21719 * 120.00199 * 186.27087 * 3 2 1 5 5 C 1.46499 * 119.99643 * 6.26679 * 3 2 1 6 6 C 1.36112 * 125.70799 * 187.74540 * 5 3 2 7 7 C 1.42233 * 107.62344 * 179.85547 * 6 5 3 8 8 C 1.45591 * 140.78025 * 180.02562 * 7 6 5 9 9 C 1.31807 * 114.63394 * 180.37491 * 8 7 6 10 10 S 1.75351 * 111.24443 * 359.97438 * 9 8 7 11 11 C 1.38176 * 106.99204 * 0.41155 * 7 6 5 12 12 N 1.37457 * 108.17249 * 359.75345 * 11 7 6 13 13 H 0.96991 * 125.68614 * 179.97438 * 12 11 7 14 14 C 1.46501 * 119.99720 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.63900 * 178.30665 * 14 2 1 16 16 C 1.54318 * 110.72263 * 301.44961 * 14 2 1 17 17 N 1.47023 * 107.27552 * 140.73594 * 16 14 2 18 18 C 1.36929 * 125.65307 * 181.07924 * 17 16 14 19 19 H 1.07999 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99662 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99715 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47359 * 60.00027 * 22 20 18 24 24 H 1.48503 * 109.46916 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47271 * 299.99414 * 22 20 18 26 26 C 1.47434 * 108.69655 * 1.06151 * 17 16 14 27 27 C 1.54909 * 104.83277 * 335.86890 * 26 17 16 28 28 H 1.09000 * 111.00279 * 278.93485 * 27 26 17 29 29 O 1.42901 * 111.00130 * 155.08915 * 27 26 17 30 30 H 1.08998 * 109.46526 * 275.80484 * 1 2 3 31 31 H 1.08996 * 109.47345 * 35.80663 * 1 2 3 32 32 H 1.08997 * 109.46904 * 155.80657 * 1 2 3 33 33 H 1.07999 * 126.19018 * 359.97438 * 6 5 3 34 34 H 1.08004 * 122.67967 * 0.34628 * 8 7 6 35 35 H 1.08006 * 124.37795 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.88375 * 21.31620 * 16 14 2 37 37 H 1.09009 * 110.01175 * 260.22686 * 16 14 2 38 38 H 0.97004 * 119.99637 * 180.02562 * 21 20 18 39 39 H 1.08999 * 110.36318 * 94.71381 * 26 17 16 40 40 H 1.09000 * 110.35994 * 217.03008 * 26 17 16 41 41 H 0.96695 * 114.00206 * 61.44906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3507 1.1703 -0.1151 5 6 1.4130 2.4321 0.1385 6 6 1.9508 3.6754 0.0058 7 6 0.9080 4.6201 0.2133 8 6 0.6770 6.0573 0.2406 9 6 -0.5649 6.4091 0.5074 10 16 -1.5845 5.0039 0.7534 11 6 -0.2417 3.9008 0.4779 12 7 0.0696 2.5627 0.4317 13 1 -0.5507 1.8320 0.5805 14 6 2.1975 -1.2688 -0.0006 15 1 3.2726 -1.0917 -0.0306 16 6 1.8183 -2.1187 1.2304 17 7 1.7366 -3.5179 0.7864 18 6 1.4049 -4.5873 1.5747 19 1 1.1752 -4.4374 2.6193 20 6 1.3640 -5.8640 1.0312 21 7 1.6435 -6.0465 -0.2418 22 14 0.9108 -7.3226 2.1065 23 1 -0.4527 -7.1246 2.6604 24 1 0.9385 -8.5648 1.2931 25 1 1.8858 -7.4382 3.2207 26 6 2.0706 -3.5788 -0.6483 27 6 1.7549 -2.1621 -1.1894 28 1 0.6892 -2.0483 -1.3881 29 8 2.5251 -1.8771 -2.3589 30 1 -0.3632 0.1039 1.0224 31 1 -0.3634 0.8334 -0.6012 32 1 -0.3633 -0.9374 -0.4211 33 1 2.9824 3.9033 -0.2186 34 1 1.4607 6.7775 0.0573 35 1 -0.9099 7.4309 0.5669 36 1 0.8528 -1.7965 1.6201 37 1 2.5815 -2.0187 2.0022 38 1 1.6146 -6.9386 -0.6217 39 1 3.1275 -3.8094 -0.7822 40 1 1.4525 -4.3232 -1.1503 41 1 2.3524 -2.4751 -3.0989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047477607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:41 Heat of formation + Delta-G solvation = 26.650825 kcal Electronic energy + Delta-G solvation = -26490.032286 eV Core-core repulsion = 22691.653995 eV Total energy + Delta-G solvation = -3798.378291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.62615 -40.91737 -39.33950 -36.91218 -36.69337 -36.07469 -33.89988 -31.67624 -30.88183 -29.57822 -28.83925 -28.13033 -26.45095 -24.26505 -23.75602 -22.40758 -21.40786 -21.20330 -20.46503 -19.48512 -19.07253 -18.57661 -17.63627 -17.41946 -16.80806 -16.71430 -16.10283 -15.70723 -15.65393 -15.43973 -15.36790 -14.91310 -14.81440 -14.60967 -14.34303 -14.01295 -13.74285 -13.61555 -13.37771 -13.19727 -13.10247 -12.85207 -12.73805 -12.70202 -12.55267 -12.10980 -11.95363 -11.74521 -11.53836 -11.40575 -10.99303 -10.78043 -10.57819 -9.91104 -9.28904 -9.00748 -8.63981 -7.83398 -5.30410 0.08926 0.15461 0.43415 1.08514 1.47099 1.50197 1.55520 1.59222 1.76367 2.13027 2.26960 2.46070 3.01148 3.27974 3.30562 3.60286 3.71542 3.79684 3.80161 3.94400 4.02312 4.12366 4.23824 4.32401 4.41486 4.45498 4.57166 4.63923 4.75996 4.77942 4.87250 5.09276 5.19460 5.33628 5.35155 5.42525 5.43366 5.63848 5.65013 6.07947 6.15414 6.17429 6.80283 6.84143 7.01600 7.66188 8.28411 9.18225 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002619 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.394301 B =10689.859535 C =11360.167013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.595 5.595 3 C 0.586 3.414 4 O -0.563 6.563 5 C -0.017 4.017 6 C -0.079 4.079 7 C -0.181 4.181 8 C -0.087 4.087 9 C -0.211 4.211 10 S 0.160 5.840 11 C -0.025 4.025 12 N -0.522 5.522 13 H 0.433 0.567 14 C 0.148 3.852 15 H 0.087 0.913 16 C 0.134 3.866 17 N -0.616 5.616 18 C -0.243 4.243 19 H 0.086 0.914 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.983 3.017 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.135 3.865 27 C 0.084 3.916 28 H 0.083 0.917 29 O -0.571 6.571 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.203 0.797 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.250 0.750 39 H -0.009 1.009 40 H 0.091 0.909 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 23.570 -0.561 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.326 5.326 3 C 0.377 3.623 4 O -0.442 6.442 5 C -0.130 4.130 6 C -0.107 4.107 7 C -0.194 4.194 8 C -0.116 4.116 9 C -0.344 4.344 10 S 0.413 5.587 11 C -0.254 4.254 12 N -0.134 5.134 13 H 0.282 0.718 14 C 0.044 3.956 15 H 0.105 0.895 16 C 0.008 3.992 17 N -0.344 5.344 18 C -0.371 4.371 19 H 0.104 0.896 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.208 1.208 26 C 0.009 3.991 27 C 0.023 3.977 28 H 0.100 0.900 29 O -0.378 6.378 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.220 0.780 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.009 0.991 40 H 0.109 0.891 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.874 23.465 0.093 25.862 hybrid contribution 1.361 -1.909 -0.190 2.352 sum -9.513 21.556 -0.097 23.562 Atomic orbital electron populations 1.22416 0.78149 1.05401 1.03357 1.47602 1.07835 1.04620 1.72577 1.17338 0.86353 0.82548 0.76104 1.90833 1.14690 1.86856 1.51835 1.19608 0.83831 0.94051 1.15468 1.20901 0.99345 0.88835 1.01632 1.19724 0.92887 0.94149 1.12602 1.20543 0.98078 0.91827 1.01196 1.25322 0.96171 1.03006 1.09941 1.83895 1.05351 0.92753 1.76696 1.24144 1.01913 0.88421 1.10932 1.42490 1.08213 1.05270 1.57433 0.71804 1.21783 0.97194 0.82179 0.94483 0.89468 1.21593 0.99162 0.84393 0.94082 1.44491 1.81108 1.01947 1.06841 1.19408 1.39119 0.85717 0.92877 0.89650 1.25637 1.01992 0.99988 0.97769 1.69952 1.55963 1.21208 1.12526 0.85084 0.78374 0.78075 0.77351 1.19780 1.21942 1.20807 1.22367 0.97319 0.94201 0.85193 1.23462 0.94564 0.94641 0.85024 0.89992 1.86427 1.67525 1.59408 1.24436 0.89710 0.88977 0.88657 0.82746 0.81867 0.78016 0.92915 0.95810 0.94000 0.99147 0.89093 0.75617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 7.53 127.77 0.96 2.00 16 2 N -0.60 -18.42 2.89 -820.86 -2.37 -20.79 16 3 C 0.59 19.66 7.62 86.40 0.66 20.32 16 4 O -0.56 -23.39 16.25 -4.41 -0.07 -23.46 16 5 C -0.02 -0.45 6.55 39.81 0.26 -0.19 16 6 C -0.08 -2.06 10.59 22.77 0.24 -1.81 16 7 C -0.18 -3.99 6.80 -20.40 -0.14 -4.13 16 8 C -0.09 -1.34 10.42 23.40 0.24 -1.10 16 9 C -0.21 -2.46 11.03 67.05 0.74 -1.72 16 10 S 0.16 2.19 23.24 -56.49 -1.31 0.88 16 11 C -0.02 -0.51 8.41 83.80 0.70 0.20 16 12 N -0.52 -10.93 5.13 -179.04 -0.92 -11.85 16 13 H 0.43 6.97 4.88 -92.71 -0.45 6.52 16 14 C 0.15 5.66 3.08 46.18 0.14 5.81 16 15 H 0.09 3.87 7.00 -2.38 -0.02 3.86 16 16 C 0.13 5.51 6.88 86.73 0.60 6.11 16 17 N -0.62 -30.75 3.39 -691.98 -2.35 -33.10 16 18 C -0.24 -13.07 10.27 84.04 0.86 -12.20 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 21 N -0.95 -54.04 10.09 21.65 0.22 -53.82 16 22 Si 0.98 43.88 29.55 68.60 2.03 45.91 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 C 0.14 6.50 5.62 86.85 0.49 6.99 16 27 C 0.08 3.19 3.94 31.99 0.13 3.32 16 28 H 0.08 2.79 6.17 -2.39 -0.01 2.77 16 29 O -0.57 -20.79 13.47 -148.98 -2.01 -22.80 16 30 H 0.08 1.43 7.35 -2.39 -0.02 1.41 16 31 H 0.09 1.58 5.69 -2.39 -0.01 1.57 16 32 H 0.09 2.09 6.15 -2.39 -0.01 2.08 16 33 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.05 1.95 7.07 -2.39 -0.02 1.93 16 37 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.09 4.79 5.87 -2.39 -0.01 4.77 16 41 H 0.39 10.97 9.11 -74.06 -0.67 10.30 16 Total: -1.00 -73.08 345.48 -0.45 -73.53 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.02 Total: 24.76 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 6.35 Total: 20.75 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.42 Total: -119.56 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.08 Total: -46.26 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.31 Total: 0.88 kcal Total: -73.08 -0.45 -73.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047477607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.179 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds