Wall clock time and date at job start Sat Apr 11 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48505 * 109.47021 * 269.72178 * 3 2 1 5 5 H 1.48498 * 109.47475 * 29.72433 * 3 2 1 6 6 H 1.48505 * 109.47405 * 149.72371 * 3 2 1 7 7 C 1.38694 * 120.00082 * 179.72254 * 2 1 3 8 8 H 1.08001 * 120.00347 * 0.27988 * 7 2 1 9 9 O 1.34814 * 119.99901 * 180.27361 * 7 2 1 10 10 C 1.35522 * 117.00161 * 174.92854 * 9 7 2 11 11 C 1.38841 * 120.15851 * 5.59145 * 10 9 7 12 12 C 1.38021 * 120.07240 * 179.97438 * 11 10 9 13 13 C 1.38574 * 120.40014 * 0.02562 * 12 11 10 14 14 C 1.37828 * 120.32477 * 359.97438 * 13 12 11 15 15 C 1.39663 * 119.91833 * 359.70791 * 14 13 12 16 16 C 1.47543 * 120.19683 * 180.29716 * 15 14 13 17 17 O 1.21586 * 119.99690 * 180.27149 * 16 15 14 18 18 N 1.34776 * 120.00032 * 0.26928 * 16 15 14 19 19 C 1.46500 * 119.99736 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.54192 * 59.82363 * 19 18 16 21 21 O 1.20827 * 119.99565 * 145.00149 * 20 19 18 22 22 O 1.34227 * 120.00192 * 324.99367 * 20 19 18 23 23 C 1.53172 * 109.54446 * 299.55285 * 19 18 16 24 24 C 1.53088 * 109.16416 * 297.11940 * 23 19 18 25 25 O 1.42907 * 109.41385 * 302.38920 * 24 23 19 26 26 C 1.42905 * 114.09849 * 61.15741 * 25 24 23 27 27 C 1.53093 * 109.41410 * 298.84592 * 26 25 24 28 28 H 0.96996 * 119.99725 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.96076 * 359.94979 * 11 10 9 30 30 H 1.07997 * 119.80125 * 180.02562 * 12 11 10 31 31 H 1.08009 * 119.83744 * 179.97438 * 13 12 11 32 32 H 1.08003 * 120.03687 * 180.02562 * 14 13 12 33 33 H 0.96996 * 119.99813 * 0.02562 * 18 16 15 34 34 H 0.96701 * 117.00036 * 180.02562 * 22 20 19 35 35 H 1.09001 * 109.52102 * 57.02213 * 23 19 18 36 36 H 1.08999 * 109.52216 * 177.20542 * 23 19 18 37 37 H 1.09005 * 109.48126 * 182.41118 * 24 23 19 38 38 H 1.08992 * 109.49255 * 62.37678 * 24 23 19 39 39 H 1.08997 * 109.48143 * 178.85886 * 26 25 24 40 40 H 1.08997 * 109.48462 * 58.83418 * 26 25 24 41 41 H 1.08995 * 109.51733 * 297.69795 * 27 26 25 42 42 H 1.08996 * 109.51721 * 177.51449 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4438 2.6544 0.6942 6 1 3.5439 1.4420 0.7059 7 6 2.0087 -1.2011 0.0058 8 1 1.4688 -2.1365 0.0058 9 8 3.3569 -1.2010 0.0114 10 6 3.9717 -2.4035 0.1236 11 6 3.2240 -3.5733 0.1098 12 6 3.8521 -4.7970 0.2237 13 6 5.2300 -4.8687 0.3530 14 6 5.9882 -3.7178 0.3686 15 6 5.3672 -2.4727 0.2477 16 6 6.1736 -1.2372 0.2571 17 8 5.6287 -0.1549 0.1565 18 7 7.5141 -1.3083 0.3773 19 6 8.3146 -0.0814 0.3872 20 6 7.8891 0.7889 1.5416 21 8 8.7075 1.4560 2.1290 22 8 6.6008 0.8231 1.9171 23 6 8.1104 0.6744 -0.9293 24 6 8.6176 -0.1882 -2.0879 25 8 9.9935 -0.5096 -1.8738 26 6 10.2392 -1.2577 -0.6813 27 6 9.7971 -0.4381 0.5338 28 1 -0.4849 0.8400 -0.0004 29 1 2.1496 -3.5256 0.0102 30 1 3.2663 -5.7042 0.2120 31 1 5.7120 -5.8311 0.4419 32 1 7.0618 -3.7791 0.4692 33 1 7.9487 -2.1717 0.4572 34 1 6.3759 1.3964 2.6626 35 1 7.0498 0.8839 -1.0683 36 1 8.6670 1.6112 -0.9016 37 1 8.5141 0.3621 -3.0231 38 1 8.0336 -1.1069 -2.1401 39 1 11.3038 -1.4781 -0.6033 40 1 9.6765 -2.1906 -0.7149 41 1 10.3878 0.4761 0.5909 42 1 9.9428 -1.0244 1.4410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:53 Heat of formation + Delta-G solvation = -155.949503 kcal Electronic energy + Delta-G solvation = -30642.462829 eV Core-core repulsion = 26361.120772 eV Total energy + Delta-G solvation = -4281.342058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25280 -39.60596 -39.04555 -37.96389 -36.58386 -35.94111 -34.92657 -32.49729 -32.02503 -31.41796 -30.07378 -29.25224 -26.45078 -25.33513 -23.99859 -23.44408 -22.25013 -21.55475 -20.58723 -19.29527 -18.33313 -17.94702 -17.77258 -17.12622 -16.47759 -16.34203 -16.20496 -15.50193 -15.16239 -14.92662 -14.49577 -14.39550 -14.24747 -13.97112 -13.78733 -13.65390 -13.31800 -13.12739 -13.04075 -12.60331 -12.40558 -12.37995 -12.21072 -11.63031 -11.46473 -11.35580 -11.29661 -11.14876 -11.00636 -10.88132 -10.78238 -10.39842 -10.06452 -9.83913 -9.63889 -9.04531 -8.97629 -8.91566 -8.44608 -7.53411 -6.51195 -4.16580 1.51347 2.13094 2.16712 3.02939 3.24778 3.28939 3.32963 3.53575 3.62804 3.68134 4.18694 4.30853 4.41284 4.54124 4.66034 4.66794 4.90209 4.98274 5.05264 5.14992 5.19651 5.29583 5.37086 5.41491 5.49642 5.58915 5.60161 5.72752 5.80058 5.89830 5.97109 6.02964 6.31212 6.41907 6.52209 6.64281 6.76511 6.94368 6.96238 7.09516 7.42270 7.60864 7.77512 7.90277 8.04734 8.77805 8.84460 9.46261 10.53774 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.005195 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.615085 B = 5388.162347 C = 6778.923753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.230 1.230 7 C -0.396 4.396 8 H 0.107 0.893 9 O -0.163 6.163 10 C 0.202 3.798 11 C -0.226 4.226 12 C -0.051 4.051 13 C -0.220 4.220 14 C -0.043 4.043 15 C -0.224 4.224 16 C 0.560 3.440 17 O -0.478 6.478 18 N -0.735 5.735 19 C 0.197 3.803 20 C 0.479 3.521 21 O -0.529 6.529 22 O -0.467 6.467 23 C -0.167 4.167 24 C 0.068 3.932 25 O -0.380 6.380 26 C 0.064 3.936 27 C -0.149 4.149 28 H 0.282 0.718 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.398 0.602 34 H 0.397 0.603 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.431 -4.978 0.046 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.152 1.152 7 C -0.471 4.471 8 H 0.125 0.875 9 O -0.063 6.063 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.239 4.239 14 C -0.062 4.062 15 C -0.229 4.229 16 C 0.351 3.649 17 O -0.351 6.351 18 N -0.394 5.394 19 C 0.108 3.892 20 C 0.321 3.679 21 O -0.418 6.418 22 O -0.275 6.275 23 C -0.206 4.206 24 C -0.008 4.008 25 O -0.299 6.299 26 C -0.013 4.013 27 C -0.187 4.187 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.234 0.766 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.292 -3.781 -0.346 17.704 hybrid contribution -0.187 0.437 0.864 0.986 sum 17.105 -3.344 0.519 17.436 Atomic orbital electron populations 1.69640 1.05870 1.28972 1.46009 1.24500 0.94956 0.99326 0.94613 0.86248 0.81715 0.80333 0.79580 1.20142 1.21486 1.15221 1.20907 0.77127 0.96709 1.52314 0.87543 1.83766 1.22040 1.24901 1.75601 1.18991 0.90222 0.85823 0.90551 1.21296 1.01397 0.91680 1.10180 1.20967 0.94376 0.96805 0.94784 1.20534 0.94033 0.97319 1.12062 1.20742 0.97971 0.91397 0.96052 1.18771 0.91102 0.92622 1.20368 1.18169 0.80589 0.89645 0.76543 1.90848 1.70236 1.28734 1.45276 1.46076 1.07073 1.07306 1.78984 1.19926 0.91637 0.85406 0.92188 1.23758 0.80588 0.80194 0.83404 1.90683 1.53822 1.42978 1.54347 1.85061 1.27049 1.64240 1.51145 1.22650 1.05896 0.99304 0.92749 1.22547 0.81940 0.98765 0.97585 1.87942 1.25968 1.74288 1.41685 1.22572 1.01797 0.93296 0.83649 1.22407 0.92308 1.03711 1.00296 0.90830 0.84445 0.86859 0.87038 0.87081 0.76574 0.74552 0.87155 0.89903 0.88127 0.92186 0.87995 0.92764 0.88075 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.72 13.96 55.48 0.77 -23.95 16 2 C 0.07 2.00 5.49 -17.52 -0.10 1.90 16 3 Si 0.90 22.16 28.62 -169.99 -4.86 17.30 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.23 -5.85 6.95 56.52 0.39 -5.46 16 7 C -0.40 -10.88 9.95 30.90 0.31 -10.57 16 8 H 0.11 2.94 5.44 -52.49 -0.29 2.66 16 9 O -0.16 -4.22 6.67 -21.06 -0.14 -4.36 16 10 C 0.20 4.48 6.66 -38.60 -0.26 4.22 16 11 C -0.23 -4.55 9.16 -39.44 -0.36 -4.91 16 12 C -0.05 -0.82 10.03 -39.54 -0.40 -1.22 16 13 C -0.22 -3.20 10.02 -39.61 -0.40 -3.59 16 14 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 15 C -0.22 -4.17 5.89 -104.81 -0.62 -4.79 16 16 C 0.56 10.09 6.70 -12.47 -0.08 10.00 16 17 O -0.48 -10.34 10.26 -26.62 -0.27 -10.62 16 18 N -0.74 -9.76 4.17 -49.54 -0.21 -9.97 16 19 C 0.20 2.58 0.64 -132.79 -0.08 2.49 16 20 C 0.48 7.42 7.10 36.01 0.26 7.68 16 21 O -0.53 -8.80 16.80 -18.75 -0.31 -9.11 16 22 O -0.47 -7.80 9.57 -47.36 -0.45 -8.25 16 23 C -0.17 -2.23 4.75 -26.60 -0.13 -2.36 16 24 C 0.07 0.79 6.68 37.20 0.25 1.04 16 25 O -0.38 -4.27 10.77 -35.23 -0.38 -4.65 16 26 C 0.06 0.55 6.67 37.21 0.25 0.80 16 27 C -0.15 -1.48 4.55 -26.59 -0.12 -1.60 16 28 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.11 1.19 6.40 -52.48 -0.34 0.85 16 33 H 0.40 4.10 5.55 -40.82 -0.23 3.87 16 34 H 0.40 5.09 9.10 45.56 0.41 5.51 16 35 H 0.11 1.79 6.14 -51.93 -0.32 1.47 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.41 7.09 -51.93 -0.37 0.04 16 41 H 0.10 1.08 7.77 -51.93 -0.40 0.68 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -33.42 343.66 -6.44 -39.85 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.90 Total: 10.47 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.85 Total: -1.91 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.57 Total: -33.91 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.56 Total: -36.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.42 -6.44 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.095 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds