Wall clock time and date at job start Sat Apr 11 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99926 * 2 1 4 4 H 1.48502 * 109.46830 * 270.00228 * 3 2 1 5 5 H 1.48501 * 109.47019 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.46891 * 150.00082 * 3 2 1 7 7 C 1.38692 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00445 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99847 * 0.27124 * 7 2 1 10 10 C 1.35526 * 116.99756 * 174.67240 * 9 7 2 11 11 C 1.38828 * 120.16202 * 5.61663 * 10 9 7 12 12 C 1.38026 * 120.07084 * 180.02562 * 11 10 9 13 13 C 1.38572 * 120.40404 * 0.02562 * 12 11 10 14 14 C 1.37835 * 120.32152 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.91616 * 359.72214 * 14 13 12 16 16 C 1.47532 * 120.19804 * 180.27183 * 15 14 13 17 17 O 1.21595 * 120.00638 * 180.27880 * 16 15 14 18 18 N 1.34785 * 119.99963 * 0.27999 * 16 15 14 19 19 C 1.46496 * 120.00141 * 185.03594 * 18 16 15 20 20 C 1.52999 * 110.45730 * 292.63427 * 19 18 16 21 21 C 1.50701 * 109.47183 * 302.96598 * 20 19 18 22 22 O 1.20824 * 119.99608 * 4.89337 * 21 20 19 23 23 O 1.34224 * 120.00095 * 184.88599 * 21 20 19 24 24 C 1.54512 * 110.50884 * 55.23768 * 19 18 16 25 25 C 1.54477 * 104.06179 * 118.64468 * 24 19 18 26 26 O 1.44423 * 104.80446 * 336.01839 * 25 24 19 27 27 C 1.44427 * 105.27302 * 40.51489 * 26 25 24 28 28 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96603 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.79963 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.84445 * 179.97438 * 13 12 11 32 32 H 1.07993 * 120.04002 * 179.97438 * 14 13 12 33 33 H 0.97003 * 119.99719 * 5.03884 * 18 16 15 34 34 H 1.08995 * 109.47305 * 62.97360 * 20 19 18 35 35 H 1.09006 * 109.47020 * 182.97044 * 20 19 18 36 36 H 0.96705 * 117.00186 * 180.02562 * 23 21 20 37 37 H 1.09001 * 110.51274 * 237.28928 * 24 19 18 38 38 H 1.08997 * 110.51483 * 359.86413 * 24 19 18 39 39 H 1.09002 * 110.37477 * 94.85162 * 25 24 19 40 40 H 1.08997 * 110.37324 * 217.19077 * 25 24 19 41 41 H 1.09004 * 110.36993 * 200.65724 * 27 26 25 42 42 H 1.08997 * 110.37627 * 78.32262 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0086 -1.2011 -0.0005 8 1 3.0886 -1.2011 -0.0001 9 8 1.3346 -2.3686 -0.0066 10 6 2.0687 -3.5023 -0.1189 11 6 3.4555 -3.4396 -0.1041 12 6 4.2013 -4.5953 -0.2192 13 6 3.5746 -5.8242 -0.3505 14 6 2.1987 -5.9055 -0.3672 15 6 1.4309 -4.7452 -0.2453 16 6 -0.0422 -4.8256 -0.2563 17 8 -0.7072 -3.8127 -0.1551 18 7 -0.6509 -6.0220 -0.3786 19 6 -2.1090 -6.0929 -0.5005 20 6 -2.7768 -5.6492 0.8026 21 6 -2.2789 -6.5048 1.9389 22 8 -1.4084 -7.3199 1.7448 23 8 -2.8024 -6.3612 3.1665 24 6 -2.5964 -5.2241 -1.6817 25 6 -3.2757 -6.2328 -2.6343 26 8 -2.6689 -7.5047 -2.3186 27 6 -2.5516 -7.5236 -0.8792 28 1 -0.4850 0.8400 0.0004 29 1 3.9513 -2.4855 -0.0033 30 1 5.2799 -4.5415 -0.2076 31 1 4.1670 -6.7228 -0.4403 32 1 1.7151 -6.8656 -0.4702 33 1 -0.1234 -6.8360 -0.3857 34 1 -2.5321 -4.6055 0.9993 35 1 -3.8577 -5.7581 0.7124 36 1 -2.4506 -6.9321 3.8633 37 1 -3.3149 -4.4801 -1.3377 38 1 -1.7526 -4.7400 -2.1734 39 1 -4.3490 -6.2676 -2.4473 40 1 -3.0790 -5.9658 -3.6726 41 1 -1.7986 -8.2483 -0.5694 42 1 -3.5138 -7.7564 -0.4231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:22 Heat of formation + Delta-G solvation = -157.306040 kcal Electronic energy + Delta-G solvation = -30034.713751 eV Core-core repulsion = 25753.312869 eV Total energy + Delta-G solvation = -4281.400881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92630 -39.61972 -39.11837 -37.69663 -36.33001 -36.12246 -34.37356 -32.34736 -31.92928 -30.05716 -29.82134 -28.89827 -27.38086 -25.38632 -23.47096 -22.95936 -21.96321 -21.54785 -20.42677 -19.18413 -18.06068 -18.03370 -17.63663 -16.88824 -16.35437 -15.96792 -15.89537 -15.46533 -15.28054 -14.69770 -14.66370 -14.35775 -14.14365 -13.98316 -13.69869 -13.32621 -13.01902 -12.90565 -12.83094 -12.50348 -12.23184 -12.00126 -11.72026 -11.58141 -11.50252 -11.30687 -11.17047 -11.10275 -11.02618 -10.89965 -10.76560 -10.46899 -10.42597 -9.84802 -9.56192 -8.88431 -8.80142 -8.59512 -8.25211 -7.30075 -6.45690 -4.04972 1.72642 2.26086 2.33867 3.02142 3.11018 3.12140 3.16318 3.58749 3.69763 3.89029 3.92836 4.41436 4.63169 4.73345 4.78597 5.06558 5.10061 5.14240 5.18923 5.25795 5.28917 5.44544 5.51381 5.59783 5.66600 5.71341 5.76065 5.83887 5.94543 6.10758 6.14481 6.28273 6.50321 6.58612 6.65786 6.70637 6.92984 6.99345 7.08440 7.24846 7.29947 7.70892 7.90713 7.92115 8.14933 8.94714 9.07179 9.67131 10.68262 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.004128 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.380635 B = 6781.161414 C = 7482.283010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.403 4.403 8 H 0.093 0.907 9 O -0.125 6.125 10 C 0.190 3.810 11 C -0.240 4.240 12 C -0.050 4.050 13 C -0.230 4.230 14 C -0.035 4.035 15 C -0.227 4.227 16 C 0.557 3.443 17 O -0.503 6.503 18 N -0.720 5.720 19 C 0.168 3.832 20 C -0.126 4.126 21 C 0.484 3.516 22 O -0.511 6.511 23 O -0.518 6.518 24 C -0.151 4.151 25 C 0.043 3.957 26 O -0.371 6.371 27 C 0.048 3.952 28 H 0.270 0.730 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.399 0.601 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.407 0.593 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -12.770 0.337 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.110 0.890 9 O -0.023 6.023 10 C 0.131 3.869 11 C -0.259 4.259 12 C -0.069 4.069 13 C -0.249 4.249 14 C -0.054 4.054 15 C -0.232 4.232 16 C 0.347 3.653 17 O -0.377 6.377 18 N -0.376 5.376 19 C 0.080 3.920 20 C -0.164 4.164 21 C 0.326 3.674 22 O -0.398 6.398 23 O -0.330 6.330 24 C -0.189 4.189 25 C -0.034 4.034 26 O -0.289 6.289 27 C -0.029 4.029 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.236 0.764 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.771 -11.887 -0.097 13.214 hybrid contribution 1.093 0.220 0.734 1.335 sum -4.678 -11.666 0.638 12.585 Atomic orbital electron populations 1.70115 1.05913 1.27609 1.42921 1.25348 0.95801 0.98858 0.96207 0.85746 0.79021 0.80065 0.78793 1.19768 1.20169 1.19109 1.21478 0.91871 0.81156 1.53361 0.88988 1.84167 1.33447 1.10938 1.73729 1.19273 0.89851 0.87399 0.90405 1.21152 0.93427 0.99311 1.11983 1.20901 0.98633 0.92328 0.95033 1.20477 0.94094 0.97142 1.13198 1.20804 0.93861 0.95680 0.95047 1.18829 0.91946 0.92131 1.20286 1.18233 0.87871 0.82752 0.76446 1.90908 1.65605 1.34031 1.47203 1.45910 1.04895 1.09253 1.77572 1.21162 0.82426 0.95531 0.92840 1.21947 1.01957 1.02631 0.89886 1.23405 0.79234 0.81494 0.83222 1.90659 1.29640 1.35488 1.84063 1.84554 1.64474 1.63701 1.20288 1.23273 1.02526 0.98095 0.95020 1.23514 0.96608 0.82889 1.00349 1.89151 1.82317 1.36685 1.20788 1.23695 1.01319 0.95796 0.82112 0.91960 0.85113 0.87210 0.87272 0.86964 0.76429 0.84924 0.87271 0.73452 0.89213 0.88856 0.92148 0.88816 0.87787 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.56 13.67 55.48 0.76 -23.80 16 2 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 3 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.40 -11.27 9.49 30.90 0.29 -10.98 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 9 O -0.12 -3.61 7.84 -21.09 -0.17 -3.77 16 10 C 0.19 4.71 6.66 -38.60 -0.26 4.45 16 11 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.92 10.03 -39.61 -0.40 -4.32 16 14 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 15 C -0.23 -4.97 5.89 -104.81 -0.62 -5.59 16 16 C 0.56 11.85 6.86 -12.47 -0.09 11.77 16 17 O -0.50 -12.59 12.54 -16.57 -0.21 -12.80 16 18 N -0.72 -11.89 3.71 -47.18 -0.17 -12.06 16 19 C 0.17 2.36 0.51 -130.25 -0.07 2.29 16 20 C -0.13 -1.67 4.48 -27.88 -0.12 -1.80 16 21 C 0.48 6.52 7.93 36.01 0.29 6.80 16 22 O -0.51 -7.63 14.60 -18.75 -0.27 -7.90 16 23 O -0.52 -5.83 13.42 -39.24 -0.53 -6.35 16 24 C -0.15 -2.13 5.48 -25.16 -0.14 -2.27 16 25 C 0.04 0.50 7.63 37.93 0.29 0.79 16 26 O -0.37 -4.90 11.65 -35.23 -0.41 -5.31 16 27 C 0.05 0.57 5.92 37.93 0.22 0.80 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.11 1.67 6.42 -52.49 -0.34 1.33 16 33 H 0.40 6.02 6.09 -40.82 -0.25 5.77 16 34 H 0.13 2.20 6.70 -51.93 -0.35 1.85 16 35 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.41 2.81 9.10 45.56 0.41 3.23 16 37 H 0.09 1.21 7.73 -51.93 -0.40 0.81 16 38 H 0.09 1.62 7.02 -51.93 -0.36 1.26 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.24 7.30 -51.93 -0.38 0.86 16 42 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -35.09 351.21 -6.44 -41.53 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -3.88 Total: 14.62 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.82 Total: -4.75 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.58 Total: -35.87 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.58 Total: -36.14 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.09 -6.44 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.778 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds