Wall clock time and date at job start Sat Apr 11 2020 04:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35250 * 126.06888 * 2 1 4 4 C 1.40393 * 107.86424 * 180.14481 * 3 2 1 5 5 N 1.40200 * 125.97039 * 179.86707 * 4 3 2 6 6 C 1.34777 * 119.99970 * 359.70966 * 5 4 3 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27511 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72746 * 8 6 5 10 10 C 1.52999 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.50693 * 109.47331 * 180.02562 * 10 9 8 12 12 N 1.29028 * 124.91747 * 89.68982 * 11 10 9 13 13 C 1.31789 * 117.12455 * 179.81517 * 12 11 10 14 14 C 1.33644 * 114.49529 * 0.47441 * 13 12 11 15 15 S 1.70981 * 124.91591 * 269.99636 * 11 10 9 16 16 N 1.31201 * 108.05829 * 359.60283 * 4 3 2 17 17 N 1.34963 * 126.07231 * 179.70910 * 2 1 3 18 18 C 1.46498 * 125.97619 * 359.97438 * 17 2 1 19 19 C 1.50699 * 109.47274 * 269.98445 * 18 17 2 20 20 H 1.07990 * 120.00199 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99537 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99608 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00503 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47326 * 89.99728 * 23 21 19 25 25 H 1.48500 * 109.47260 * 210.00054 * 23 21 19 26 26 H 1.48500 * 109.46549 * 329.99766 * 23 21 19 27 27 H 1.09000 * 109.47394 * 270.29527 * 1 2 3 28 28 H 1.09004 * 109.47582 * 30.29390 * 1 2 3 29 29 H 1.08994 * 109.47314 * 150.29627 * 1 2 3 30 30 H 1.08000 * 126.06442 * 0.02675 * 3 2 1 31 31 H 0.97000 * 120.00293 * 179.71658 * 5 4 3 32 32 H 0.97000 * 120.00483 * 359.73178 * 8 6 5 33 33 H 1.09003 * 109.46699 * 299.99993 * 9 8 6 34 34 H 1.08993 * 109.47199 * 60.00006 * 9 8 6 35 35 H 1.09009 * 109.46616 * 300.00010 * 10 9 8 36 36 H 1.08993 * 109.47533 * 59.99611 * 10 9 8 37 37 H 1.07997 * 122.75022 * 180.22931 * 13 12 11 38 38 H 1.07999 * 126.03203 * 179.72209 * 14 13 12 39 39 H 1.09004 * 109.46990 * 29.98404 * 18 17 2 40 40 H 1.08994 * 109.47215 * 149.97783 * 18 17 2 41 41 H 0.97007 * 119.99966 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0034 5 7 4.7737 1.4752 -0.0071 6 6 4.6369 2.8160 -0.0136 7 8 3.5276 3.3140 -0.0158 8 7 5.7297 3.6048 -0.0228 9 6 5.5810 5.0623 -0.0359 10 6 6.9642 5.7160 -0.0450 11 6 6.8113 7.2151 -0.0579 12 7 6.7332 7.9586 0.9938 13 6 6.6050 9.2564 0.8040 14 6 6.5631 9.6273 -0.4792 15 16 6.7086 8.1763 -1.4682 16 7 3.6336 -0.6573 0.0033 17 7 2.3017 -1.0909 0.0055 18 6 1.8502 -2.4845 0.0131 19 6 1.6962 -2.9549 1.4365 20 1 1.9134 -2.2832 2.2537 21 6 1.2791 -4.2433 1.6954 22 7 1.1452 -4.6541 2.9376 23 14 0.9040 -5.4056 0.2818 24 1 2.1367 -6.1446 -0.0918 25 1 -0.1444 -6.3708 0.6993 26 1 0.4217 -4.6251 -0.8859 27 1 -0.3634 0.0053 1.0276 28 1 -0.3634 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 1.9720 2.1212 0.0004 31 1 5.6587 1.0781 -0.0051 32 1 6.6147 3.2076 -0.0208 33 1 5.0313 5.3633 -0.9277 34 1 5.0345 5.3797 0.8521 35 1 7.5143 5.4148 0.8466 36 1 7.5103 5.3985 -0.9332 37 1 6.5353 9.9619 1.6187 38 1 6.4581 10.6379 -0.8454 39 1 0.8912 -2.5585 -0.4997 40 1 2.5844 -3.1071 -0.4979 41 1 0.8520 -5.5607 3.1197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272089708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:43 Heat of formation + Delta-G solvation = 101.415093 kcal Electronic energy + Delta-G solvation = -24671.255617 eV Core-core repulsion = 20908.412099 eV Total energy + Delta-G solvation = -3762.843518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82727 -40.14250 -39.62690 -36.03840 -34.75818 -33.36627 -32.62068 -31.42041 -31.05027 -29.33097 -27.11831 -26.38509 -25.57823 -23.40604 -22.55941 -21.53755 -20.47504 -19.93575 -19.59867 -18.46074 -17.69654 -17.10215 -16.58743 -16.05474 -15.90471 -15.65589 -15.07321 -14.88414 -14.67821 -14.42975 -14.23639 -13.89997 -13.68075 -13.42155 -13.11191 -12.60160 -12.45674 -12.38433 -12.30921 -11.97221 -11.92788 -11.83484 -11.55337 -11.20515 -10.78983 -10.56170 -10.12391 -10.05523 -9.94765 -9.86158 -9.72699 -9.57043 -9.36554 -9.29278 -8.76881 -7.96049 -7.42268 -6.24762 -4.27663 0.22744 0.89519 1.29164 2.24082 2.44582 2.59314 3.06184 3.16405 3.22286 3.23682 3.43095 3.74152 3.79941 4.22312 4.24199 4.43467 4.51587 4.67499 4.77128 5.03735 5.04022 5.06637 5.33850 5.46999 5.55776 5.64577 5.70564 5.84782 6.06868 6.14844 6.19735 6.38669 6.47181 6.50062 6.62504 6.78858 7.03418 7.28449 7.30656 7.47349 7.87641 7.90022 8.33266 8.55340 8.61840 8.81168 9.30460 10.87759 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.034685 B = 0.001747 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.079799 B =16020.382467 C =16143.347230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 C -0.286 4.286 4 C 0.287 3.713 5 N -0.643 5.643 6 C 0.714 3.286 7 O -0.564 6.564 8 N -0.744 5.744 9 C 0.148 3.852 10 C -0.057 4.057 11 C 0.052 3.948 12 N -0.469 5.469 13 C 0.040 3.960 14 C -0.260 4.260 15 S 0.130 5.870 16 N -0.321 5.321 17 N -0.318 5.318 18 C 0.232 3.768 19 C -0.540 4.540 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.887 5.887 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.407 0.593 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.159 25.519 -10.279 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.317 4.317 4 C 0.033 3.967 5 N -0.293 5.293 6 C 0.413 3.587 7 O -0.438 6.438 8 N -0.402 5.402 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.227 4.227 12 N -0.183 5.183 13 C -0.111 4.111 14 C -0.399 4.399 15 S 0.384 5.616 16 N -0.152 5.152 17 N -0.100 5.100 18 C 0.113 3.887 19 C -0.578 4.578 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.524 5.524 23 Si 0.700 3.300 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.242 0.758 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.194 0.806 38 H 0.196 0.804 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.800 24.219 -10.705 28.989 hybrid contribution 0.299 0.283 0.277 0.496 sum 12.098 24.502 -10.428 29.248 Atomic orbital electron populations 1.20350 0.87826 1.02677 1.03451 1.21054 0.94895 0.86975 1.00709 1.21253 0.89671 0.99867 1.20905 1.18634 0.86612 0.89182 1.02292 1.41362 1.07617 1.03672 1.76638 1.15558 0.84642 0.80382 0.78069 1.90888 1.23490 1.73459 1.56006 1.44892 1.07808 1.06130 1.81341 1.21090 0.95239 0.77894 1.03566 1.20421 0.98490 0.85512 1.05387 1.26738 1.03805 1.00863 0.91251 1.66277 1.15365 1.04849 1.31838 1.21852 1.01663 0.91300 0.96326 1.27160 1.12695 1.03404 0.96670 1.84139 1.66518 0.98541 1.12416 1.77244 0.99433 1.08441 1.30051 1.48478 1.01164 1.06967 1.53421 1.19987 0.95270 0.73780 0.99670 1.21184 1.47241 0.99010 0.90380 0.90106 1.24814 0.94509 0.97481 0.95767 1.69880 1.45798 1.18259 1.18439 0.86887 0.78954 0.81491 0.82644 1.19674 1.20561 1.18884 0.90089 0.90662 0.91148 0.82033 0.75820 0.76770 0.91023 0.90505 0.87739 0.88682 0.80564 0.80434 0.93234 0.93702 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 36.01 0.36 -1.07 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.90 9.52 -39.84 -0.38 -6.27 16 4 C 0.29 5.79 8.11 -154.37 -1.25 4.54 16 5 N -0.64 -9.76 5.46 -15.51 -0.08 -9.84 16 6 C 0.71 10.29 8.53 -86.92 -0.74 9.55 16 7 O -0.56 -10.23 13.47 5.28 0.07 -10.16 16 8 N -0.74 -6.86 5.56 -65.22 -0.36 -7.22 16 9 C 0.15 1.26 5.66 -4.04 -0.02 1.24 16 10 C -0.06 -0.33 5.91 -27.89 -0.16 -0.50 16 11 C 0.05 0.40 6.64 -13.46 -0.09 0.31 16 12 N -0.47 -4.37 10.54 -11.86 -0.13 -4.50 16 13 C 0.04 0.29 11.35 -19.18 -0.22 0.07 16 14 C -0.26 -1.52 11.37 29.12 0.33 -1.19 16 15 S 0.13 0.80 23.18 -107.50 -2.49 -1.69 16 16 N -0.32 -7.30 12.59 31.44 0.40 -6.91 16 17 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 18 C 0.23 5.60 5.06 -5.20 -0.03 5.58 16 19 C -0.54 -15.18 9.94 -34.44 -0.34 -15.53 16 20 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 23 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.15 7.07 -51.93 -0.37 0.78 16 30 H 0.16 3.28 5.91 -52.49 -0.31 2.97 16 31 H 0.41 4.79 8.84 -40.82 -0.36 4.43 16 32 H 0.40 2.29 8.49 -40.82 -0.35 1.94 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.05 1.11 6.10 -51.93 -0.32 0.80 16 40 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -36.34 366.46 -9.45 -45.79 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.07 Total: 6.52 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.21 Total: 0.22 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.39 Total: -61.73 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.34 -9.45 -45.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272089708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.209 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds