Wall clock time and date at job start Sat Apr 11 2020 04:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38099 * 119.50928 * 2 1 4 4 C 1.38704 * 119.36060 * 180.02562 * 3 2 1 5 5 C 1.39031 * 118.41533 * 359.97438 * 4 3 2 6 6 N 1.39885 * 120.50808 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00055 * 326.59125 * 6 5 4 8 8 O 1.21387 * 119.99725 * 5.08356 * 7 6 5 9 9 C 1.49329 * 120.00238 * 185.08361 * 7 6 5 10 10 O 1.21365 * 120.00051 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00049 * 180.02562 * 9 7 6 12 12 C 1.47419 * 125.65034 * 359.95875 * 11 9 7 13 13 C 1.54910 * 104.83456 * 204.16553 * 12 11 9 14 14 C 1.55160 * 101.57813 * 322.98923 * 13 12 11 15 15 O 1.42903 * 110.72011 * 277.13573 * 14 13 12 16 16 C 1.50696 * 110.87373 * 153.94013 * 14 13 12 17 17 H 1.08005 * 120.00114 * 268.20924 * 16 14 13 18 18 C 1.37881 * 120.00469 * 88.19921 * 16 14 13 19 19 N 1.31512 * 119.99961 * 173.32606 * 18 16 14 20 20 Si 1.86799 * 119.99773 * 353.33311 * 18 16 14 21 21 H 1.48504 * 109.46859 * 85.94991 * 20 18 16 22 22 H 1.48500 * 109.46772 * 205.94922 * 20 18 16 23 23 H 1.48497 * 109.46989 * 325.95215 * 20 18 16 24 24 C 1.47026 * 125.64901 * 179.97438 * 11 9 7 25 25 C 1.39559 * 118.97546 * 0.27282 * 5 4 3 26 26 O 1.35734 * 119.72560 * 179.72738 * 25 5 4 27 27 N 1.31998 * 119.50400 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46967 * 90.00518 * 1 2 3 29 29 H 1.09008 * 109.47098 * 210.00220 * 1 2 3 30 30 H 1.08999 * 109.47290 * 330.00513 * 1 2 3 31 31 H 1.08004 * 120.31499 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.78999 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00397 * 146.59874 * 6 5 4 34 34 H 1.09000 * 110.36595 * 323.00235 * 12 11 9 35 35 H 1.08997 * 110.36812 * 85.32298 * 12 11 9 36 36 H 1.08996 * 111.00606 * 204.91884 * 13 12 11 37 37 H 1.08996 * 111.00773 * 81.05941 * 13 12 11 38 38 H 0.96699 * 113.99942 * 169.92080 * 15 14 13 39 39 H 0.97000 * 119.99887 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.88255 * 59.48799 * 24 11 9 41 41 H 1.09003 * 109.87874 * 298.32784 * 24 11 9 42 42 H 0.96698 * 113.99976 * 90.00919 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2018 0.0000 4 6 3.5743 1.1982 -0.0005 5 6 4.2327 -0.0263 -0.0005 6 7 5.6305 -0.0810 -0.0005 7 6 6.3420 0.8663 -0.6432 8 8 5.7753 1.8162 -1.1431 9 6 7.8273 0.7471 -0.7403 10 8 8.3939 -0.2024 -0.2401 11 7 8.5388 1.6946 -1.3825 12 6 7.9815 2.8948 -2.0323 13 6 9.0308 3.2905 -3.1011 14 6 10.3592 2.9593 -2.3710 15 8 10.7430 4.0321 -1.5084 16 6 11.4545 2.6556 -3.3604 17 1 11.6306 1.6377 -3.6755 18 6 12.2317 3.6772 -3.8637 19 7 13.2692 3.4011 -4.6233 20 14 11.8112 5.4534 -3.4665 21 1 12.4364 5.8329 -2.1740 22 1 12.3259 6.3366 -4.5436 23 1 10.3372 5.6024 -3.3660 24 6 9.9993 1.7023 -1.5514 25 6 3.4775 -1.1999 -0.0058 26 8 4.1047 -2.4037 -0.0114 27 7 2.1571 -1.1488 -0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6443 2.1355 -0.0004 32 1 4.1295 2.1246 -0.0010 33 1 6.0877 -0.8007 0.4619 34 1 7.0276 2.6617 -2.5053 35 1 7.8592 3.6976 -1.3053 36 1 8.9682 4.3531 -3.3355 37 1 8.9186 2.6861 -4.0013 38 1 11.4767 3.8174 -0.9163 39 1 13.8163 4.1198 -4.9770 40 1 10.3152 0.8074 -2.0875 41 1 10.4849 1.7436 -0.5764 42 1 4.2864 -2.7566 0.8703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592299708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:14:35 Heat of formation + Delta-G solvation = -98.831554 kcal Electronic energy + Delta-G solvation = -28769.052751 eV Core-core repulsion = 24522.480264 eV Total energy + Delta-G solvation = -4246.572486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54663 -40.40384 -38.92566 -37.73572 -37.59405 -35.76006 -34.71787 -32.43521 -32.19129 -31.82577 -30.50144 -28.61151 -27.75053 -26.04230 -24.14848 -23.86997 -22.71323 -21.85332 -20.27667 -19.80972 -19.00729 -18.40208 -17.71908 -17.44586 -16.77075 -16.49004 -16.30590 -15.84610 -15.30834 -15.04832 -14.81922 -14.69576 -14.52829 -14.25993 -13.69334 -13.55840 -13.38550 -13.04303 -12.92607 -12.65153 -12.58831 -12.47598 -12.16632 -12.05570 -11.99337 -11.57574 -11.38985 -11.19959 -11.01623 -10.57241 -10.39260 -10.25107 -10.07146 -9.86433 -9.34244 -9.27924 -8.76842 -8.61535 -8.55028 -8.42243 -6.24839 -4.37810 0.46067 0.82085 1.41364 2.11954 3.02804 3.17128 3.34516 3.40143 3.42340 3.47769 3.61801 4.20190 4.21178 4.43616 4.44722 4.59212 4.81353 4.96202 5.05668 5.09227 5.21544 5.23522 5.26988 5.44621 5.58823 5.61936 5.69676 5.77172 5.81915 5.88777 6.05021 6.20902 6.30110 6.33811 6.58784 6.68354 6.72679 6.98377 7.06852 7.34283 7.44814 7.53767 7.57070 7.96833 8.06484 8.54862 8.75495 9.35893 10.83897 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002555 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.418678 B =10956.449492 C =11590.573986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.132 3.868 3 C -0.160 4.160 4 C -0.062 4.062 5 C 0.077 3.923 6 N -0.637 5.637 7 C 0.515 3.485 8 O -0.495 6.495 9 C 0.515 3.485 10 O -0.531 6.531 11 N -0.572 5.572 12 C 0.093 3.907 13 C -0.127 4.127 14 C 0.219 3.781 15 O -0.563 6.563 16 C -0.555 4.555 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.885 5.885 20 Si 0.944 3.056 21 H -0.289 1.289 22 H -0.323 1.323 23 H -0.266 1.266 24 C 0.089 3.911 25 C 0.298 3.702 26 O -0.473 6.473 27 N -0.485 5.485 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.425 0.575 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.793 -4.418 12.223 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.006 4.006 3 C -0.180 4.180 4 C -0.090 4.090 5 C -0.021 4.021 6 N -0.284 5.284 7 C 0.298 3.702 8 O -0.368 6.368 9 C 0.296 3.704 10 O -0.409 6.409 11 N -0.304 5.304 12 C -0.029 4.029 13 C -0.165 4.165 14 C 0.179 3.821 15 O -0.371 6.371 16 C -0.592 4.592 17 H 0.099 0.901 18 C -0.128 4.128 19 N -0.520 5.520 20 Si 0.779 3.221 21 H -0.217 1.217 22 H -0.254 1.254 23 H -0.192 1.192 24 C -0.032 4.032 25 C 0.115 3.885 26 O -0.280 6.280 27 N -0.204 5.204 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.263 0.737 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.221 0.779 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -22.618 -4.693 11.111 25.633 hybrid contribution 1.203 0.775 1.060 1.781 sum -21.415 -3.919 12.171 24.941 Atomic orbital electron populations 1.20727 0.88226 1.03631 1.03395 1.21047 0.96973 0.87123 0.95451 1.21940 0.94011 0.99542 1.02539 1.21810 0.94369 0.97805 0.95006 1.18820 0.83458 0.94423 1.05433 1.42925 1.03693 1.29606 1.52208 1.20544 0.89058 0.82464 0.78183 1.90712 1.71689 1.30217 1.44181 1.19224 0.86531 0.83381 0.81244 1.90763 1.71237 1.31399 1.47527 1.48469 1.09457 1.21914 1.50513 1.22815 0.98378 0.85881 0.95847 1.23239 0.93197 1.02883 0.97147 1.20130 0.93406 0.81351 0.87205 1.86138 1.55613 1.41300 1.54035 1.21136 1.15552 0.96583 1.25908 0.90087 1.25095 0.93518 1.00810 0.93415 1.69962 1.15454 1.33777 1.32807 0.85810 0.79126 0.81810 0.75380 1.21656 1.25407 1.19228 1.23156 0.76783 1.02596 1.00683 1.18949 0.86749 0.84094 0.98698 1.84907 1.76504 1.32775 1.33789 1.67000 1.08353 1.30624 1.14431 0.90169 0.90370 0.90345 0.83791 0.82295 0.73681 0.89204 0.91023 0.89444 0.89554 0.77941 0.92299 0.89914 0.91455 0.74465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.16 36.01 0.37 -0.23 16 2 C 0.13 1.22 6.78 -82.57 -0.56 0.66 16 3 C -0.16 -1.38 9.72 -39.46 -0.38 -1.76 16 4 C -0.06 -0.67 8.82 -39.12 -0.35 -1.01 16 5 C 0.08 0.88 6.37 -83.40 -0.53 0.35 16 6 N -0.64 -7.49 5.19 -10.09 -0.05 -7.54 16 7 C 0.51 7.40 7.72 -11.64 -0.09 7.31 16 8 O -0.49 -7.50 11.15 5.46 0.06 -7.44 16 9 C 0.51 8.59 7.91 -11.64 -0.09 8.49 16 10 O -0.53 -9.61 16.81 5.48 0.09 -9.52 16 11 N -0.57 -10.10 3.33 -171.08 -0.57 -10.67 16 12 C 0.09 1.57 6.05 -2.53 -0.02 1.55 16 13 C -0.13 -2.46 5.86 -24.58 -0.14 -2.60 16 14 C 0.22 4.64 0.68 -89.94 -0.06 4.58 16 15 O -0.56 -11.52 8.82 -35.23 -0.31 -11.83 16 16 C -0.55 -14.23 8.82 -34.44 -0.30 -14.54 16 17 H 0.08 2.28 7.79 -52.48 -0.41 1.87 16 18 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 19 N -0.89 -25.68 13.96 55.43 0.77 -24.90 16 20 Si 0.94 22.46 24.89 -169.99 -4.23 18.23 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.32 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.27 -6.11 5.16 56.52 0.29 -5.82 16 24 C 0.09 1.72 6.20 -3.07 -0.02 1.70 16 25 C 0.30 3.34 7.77 -16.92 -0.13 3.21 16 26 O -0.47 -4.62 13.12 -18.91 -0.25 -4.87 16 27 N -0.48 -5.49 10.29 -9.38 -0.10 -5.59 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.16 1.76 6.18 -52.49 -0.32 1.44 16 33 H 0.42 4.30 8.04 -40.82 -0.33 3.97 16 34 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 37 H 0.09 1.68 8.04 -51.93 -0.42 1.27 16 38 H 0.37 6.62 8.98 45.56 0.41 7.03 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.08 1.69 7.64 -51.93 -0.40 1.29 16 41 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 42 H 0.40 1.77 9.06 45.56 0.41 2.19 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -33.27 350.16 -5.17 -38.44 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.46 Total: 10.74 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -2.41 Total: 9.68 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.06 Total: -48.70 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.41 Total: -33.66 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.23 Total: 18.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.27 -5.17 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592299708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.391 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds