Wall clock time and date at job start Sat Apr 11 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48506 * 109.46683 * 269.99394 * 3 2 1 5 5 H 1.48497 * 109.47448 * 29.99398 * 3 2 1 6 6 H 1.48499 * 109.47048 * 149.99747 * 3 2 1 7 7 C 1.38811 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00320 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00204 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47131 * 325.00957 * 10 9 7 12 12 C 1.53004 * 109.46757 * 85.00032 * 10 9 7 13 13 C 1.53001 * 109.46952 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47433 * 300.00209 * 13 12 10 15 15 C 1.53001 * 109.46889 * 59.99818 * 14 13 12 16 16 H 1.09005 * 109.47188 * 60.00249 * 15 14 13 17 17 N 1.46498 * 109.47161 * 179.97438 * 15 14 13 18 18 C 1.34772 * 120.00118 * 275.00331 * 17 15 14 19 19 O 1.21632 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.47270 * 119.99720 * 179.97438 * 18 17 15 21 21 N 1.33554 * 123.14429 * 0.02562 * 20 18 17 22 22 C 1.28645 * 115.76979 * 179.97438 * 21 20 18 23 23 S 1.70779 * 110.55790 * 359.72868 * 22 21 20 24 24 C 1.35213 * 123.14093 * 180.02562 * 20 18 17 25 25 C 1.50706 * 125.58258 * 0.02562 * 24 20 18 26 26 C 1.52999 * 117.49476 * 188.62160 * 25 24 20 27 27 C 1.52999 * 60.00071 * 252.51182 * 26 25 24 28 28 C 1.52992 * 109.47347 * 205.00079 * 10 9 7 29 29 H 0.97003 * 120.00116 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99582 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47674 * 300.00018 * 12 10 9 32 32 H 1.09005 * 109.46965 * 60.00706 * 12 10 9 33 33 H 1.08999 * 109.47313 * 60.00486 * 13 12 10 34 34 H 1.09004 * 109.46940 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47097 * 300.00409 * 14 13 12 36 36 H 1.08994 * 109.47046 * 179.97438 * 14 13 12 37 37 H 0.97005 * 119.99946 * 95.00184 * 17 15 14 38 38 H 1.07999 * 124.72501 * 180.02562 * 22 21 20 39 39 H 1.08994 * 115.55303 * 334.33254 * 25 24 20 40 40 H 1.09002 * 117.49924 * 359.97438 * 26 25 24 41 41 H 1.08996 * 117.49693 * 145.02363 * 26 25 24 42 42 H 1.08996 * 117.50278 * 252.51025 * 27 26 25 43 43 H 1.09008 * 117.49745 * 107.49045 * 27 26 25 44 44 H 1.09004 * 109.47030 * 60.00380 * 28 10 9 45 45 H 1.09000 * 109.47722 * 300.00516 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5645 -3.2066 0.5900 12 6 4.2588 -2.9750 -1.4361 13 6 5.0244 -4.2997 -1.4362 14 6 6.4114 -4.0873 -0.8261 15 6 6.2646 -3.5831 0.6109 16 1 5.7174 -4.3191 1.2001 17 7 7.5926 -3.3803 1.1953 18 6 8.2447 -4.4148 1.7618 19 8 7.7305 -5.5168 1.7883 20 6 9.5800 -4.2109 2.3487 21 7 10.2023 -3.0293 2.3547 22 6 11.3647 -3.0121 2.9057 23 16 11.7734 -4.5632 3.4919 24 6 10.2903 -5.2026 2.9319 25 6 9.8446 -6.6355 3.0714 26 6 10.7009 -7.5604 3.9388 27 6 10.7122 -7.7122 2.4164 28 6 5.4990 -2.2590 0.6113 29 1 -0.4850 0.8401 -0.0004 30 1 3.8645 -0.3621 0.0014 31 1 3.2708 -3.1259 -1.8708 32 1 4.8065 -2.2392 -2.0251 33 1 4.4772 -5.0356 -0.8471 34 1 5.1293 -4.6586 -2.4601 35 1 6.9586 -3.3513 -1.4152 36 1 6.9565 -5.0311 -0.8258 37 1 8.0026 -2.5014 1.1745 38 1 11.9925 -2.1375 2.9904 39 1 8.7662 -6.7938 3.0788 40 1 11.5868 -7.1326 4.4081 41 1 10.1858 -8.3273 4.5172 42 1 10.2046 -8.5789 1.9932 43 1 11.6053 -7.3841 1.8845 44 1 5.3945 -1.8999 1.6351 45 1 6.0467 -1.5232 0.0223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:11 Heat of formation + Delta-G solvation = 34.768337 kcal Electronic energy + Delta-G solvation = -26228.471486 eV Core-core repulsion = 22566.278291 eV Total energy + Delta-G solvation = -3662.193195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87596 -39.25398 -37.86072 -37.54798 -34.78130 -33.34263 -31.32949 -30.89569 -29.56703 -28.25772 -26.28510 -23.63539 -23.15614 -22.78900 -22.41970 -21.87326 -20.73349 -20.14329 -19.39446 -18.49196 -17.55020 -17.09872 -16.17478 -15.98078 -15.60025 -15.02626 -14.67315 -14.54630 -14.51567 -14.23598 -13.90189 -13.68798 -13.53072 -13.22479 -12.66733 -12.51889 -12.38971 -12.23222 -12.18352 -12.00263 -11.45633 -11.24890 -11.07044 -10.99796 -10.94192 -10.83270 -10.38324 -10.30605 -10.25003 -10.14895 -10.00447 -9.71771 -9.69976 -9.56864 -9.27078 -8.94542 -8.86147 -7.25384 -5.75098 -3.10587 0.12821 0.79094 1.21922 1.70579 3.12749 3.17589 3.38554 3.41413 3.46395 3.51854 3.78575 4.08910 4.39435 4.57049 4.60564 4.67644 4.82511 4.88260 5.03258 5.14216 5.19042 5.28772 5.42407 5.47363 5.50944 5.54722 5.62430 5.65367 5.66448 5.81031 5.84113 5.87876 5.96354 6.09122 6.23917 6.28076 6.40380 6.49008 6.57178 6.66919 6.90932 6.99812 7.05495 7.53232 8.01751 8.13802 8.44051 9.22548 9.95087 10.14930 11.43287 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.002464 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.039794 B =11360.384818 C =12167.193616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.189 3.811 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.091 0.909 17 N -0.705 5.705 18 C 0.595 3.405 19 O -0.531 6.531 20 C -0.001 4.001 21 N -0.436 5.436 22 C -0.006 4.006 23 S 0.198 5.802 24 C -0.148 4.148 25 C -0.088 4.088 26 C -0.177 4.177 27 C -0.159 4.159 28 C -0.133 4.133 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.407 0.593 38 H 0.205 0.795 39 H 0.150 0.850 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.286 -12.520 6.419 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.079 3.921 11 H 0.075 0.925 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.109 0.891 17 N -0.355 5.355 18 C 0.378 3.622 19 O -0.408 6.408 20 C -0.135 4.135 21 N -0.149 5.149 22 C -0.306 4.306 23 S 0.455 5.545 24 C -0.272 4.272 25 C -0.108 4.108 26 C -0.215 4.215 27 C -0.197 4.197 28 C -0.172 4.172 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.222 0.778 39 H 0.168 0.832 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 29.271 -13.164 6.729 32.793 hybrid contribution 0.019 1.899 -0.468 1.956 sum 29.290 -11.265 6.261 32.000 Atomic orbital electron populations 1.69700 1.05094 1.25768 1.57677 1.24671 0.95227 0.97179 1.02156 0.86549 0.79202 0.85053 0.77719 1.21149 1.21819 1.20346 1.19080 0.80527 0.94715 1.42755 0.89141 1.42769 1.04011 1.01939 1.90324 1.20063 0.89361 0.89278 0.93404 0.92459 1.22256 1.00215 0.95283 0.99975 1.21479 0.94944 0.98717 1.00123 1.21893 0.98159 1.00979 0.95241 1.21055 0.81741 0.98539 0.94181 0.89107 1.45984 1.19217 1.12310 1.57976 1.16980 0.82767 0.84667 0.77752 1.90749 1.67224 1.24037 1.58822 1.20390 0.98628 0.88043 1.06452 1.66956 1.07224 1.24425 1.16333 1.28328 0.97209 1.02426 1.02617 1.82807 1.15489 1.03619 1.52624 1.24841 0.98771 1.00520 1.03049 1.20738 1.00556 0.83744 1.05803 1.23166 1.01781 1.02641 0.93922 1.23077 1.01380 1.00079 0.95161 1.22122 0.97408 0.95591 1.02096 0.93099 0.80718 0.91357 0.92760 0.91937 0.92328 0.92068 0.92031 0.75770 0.77802 0.83218 0.88717 0.87492 0.87557 0.88663 0.91191 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.21 27.74 -169.99 -4.71 17.50 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.59 4.92 -53.43 -0.26 -17.85 16 10 C 0.19 3.59 2.77 -67.93 -0.19 3.40 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.12 -1.68 5.50 -26.73 -0.15 -1.83 16 15 C 0.15 2.12 2.45 -67.96 -0.17 1.95 16 16 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 17 N -0.71 -9.32 5.07 -54.95 -0.28 -9.60 16 18 C 0.59 8.36 7.76 -12.59 -0.10 8.26 16 19 O -0.53 -8.46 13.82 5.25 0.07 -8.39 16 20 C 0.00 -0.01 6.70 -84.52 -0.57 -0.58 16 21 N -0.44 -4.72 10.12 -12.36 -0.13 -4.84 16 22 C -0.01 -0.05 12.17 51.43 0.63 0.58 16 23 S 0.20 1.30 21.76 -107.50 -2.34 -1.04 16 24 C -0.15 -1.50 6.04 -35.38 -0.21 -1.72 16 25 C -0.09 -0.85 5.40 -91.77 -0.50 -1.34 16 26 C -0.18 -1.20 10.03 -26.73 -0.27 -1.46 16 27 C -0.16 -1.19 10.23 -26.73 -0.27 -1.46 16 28 C -0.13 -2.09 4.86 -26.76 -0.13 -2.22 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 4.93 8.12 -40.82 -0.33 4.60 16 38 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 1.77 6.17 -51.93 -0.32 1.45 16 40 H 0.09 0.54 7.28 -51.93 -0.38 0.16 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -33.26 376.26 -10.42 -43.69 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.74 Total: 11.22 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.48 Total: -7.64 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.11 Total: -61.01 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.34 Total: -1.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.26 -10.42 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.454 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds