Wall clock time and date at job start Sat Apr 11 2020 04:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00271 * 2 1 4 4 C 1.52996 * 109.47539 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.68144 * 177.93539 * 4 3 2 6 6 C 1.53299 * 109.71117 * 57.39794 * 4 3 2 7 7 O 1.42959 * 109.22105 * 187.95734 * 6 4 3 8 8 C 1.42964 * 114.16852 * 62.58155 * 7 6 4 9 9 C 1.53710 * 109.14679 * 297.28932 * 8 7 6 10 10 N 1.47149 * 109.68138 * 298.45228 * 4 3 2 11 11 C 1.34774 * 120.98336 * 350.27710 * 10 4 3 12 12 O 1.21281 * 120.00000 * 354.40498 * 11 10 4 13 13 C 1.50702 * 120.00134 * 174.40972 * 11 10 4 14 14 C 1.50704 * 109.47018 * 179.97438 * 13 11 10 15 15 C 1.38314 * 119.96722 * 269.72370 * 14 13 11 16 16 C 1.38287 * 120.13897 * 179.76973 * 15 14 13 17 17 C 1.38125 * 120.06706 * 0.50952 * 16 15 14 18 18 C 1.38862 * 119.92816 * 359.74399 * 17 16 15 19 19 O 1.35752 * 120.06583 * 179.97438 * 18 17 16 20 20 C 1.34824 * 117.00397 * 5.39364 * 19 18 17 21 21 H 1.08003 * 119.99877 * 354.96966 * 20 19 18 22 22 C 1.38654 * 120.00185 * 174.96390 * 20 19 18 23 23 N 1.31550 * 119.99978 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47211 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47161 * 119.99715 * 24 22 20 27 27 H 1.48499 * 109.47099 * 240.00043 * 24 22 20 28 28 C 1.38082 * 119.96100 * 90.00048 * 14 13 11 29 29 H 1.08994 * 109.46934 * 299.99506 * 1 2 3 30 30 H 1.08998 * 109.47544 * 59.99786 * 1 2 3 31 31 H 1.09003 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46767 * 59.99827 * 3 2 1 33 33 H 1.09006 * 109.46904 * 300.00714 * 3 2 1 34 34 H 1.08998 * 109.51021 * 307.88379 * 6 4 3 35 35 H 1.09003 * 109.50821 * 68.03114 * 6 4 3 36 36 H 1.09000 * 109.51034 * 57.34249 * 8 7 6 37 37 H 1.09000 * 109.51162 * 177.44624 * 8 7 6 38 38 H 1.09004 * 109.83708 * 292.85656 * 9 8 7 39 39 H 1.08998 * 109.74840 * 172.16773 * 9 8 7 40 40 H 1.09005 * 109.46932 * 59.99835 * 13 11 10 41 41 H 1.08998 * 109.47277 * 299.99448 * 13 11 10 42 42 H 1.08001 * 119.93370 * 0.02562 * 15 14 13 43 43 H 1.07999 * 119.97008 * 180.26076 * 16 15 14 44 44 H 1.07999 * 120.04023 * 179.73053 * 17 16 15 45 45 H 0.97005 * 119.99817 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.03724 * 359.95689 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9824 2.1782 -0.0376 6 6 3.9890 0.3689 -1.2167 7 8 5.3898 0.1043 -1.1101 8 6 5.7517 -0.6845 0.0260 9 6 5.3896 0.0822 1.3081 10 7 3.9779 0.4873 1.2172 11 6 3.1168 0.2319 2.2221 12 8 1.9852 0.6659 2.1760 13 6 3.5601 -0.5928 3.4030 14 6 2.4185 -0.7291 4.3773 15 6 2.2580 0.2013 5.3881 16 6 1.2090 0.0823 6.2813 17 6 0.3240 -0.9726 6.1727 18 6 0.4855 -1.9112 5.1622 19 8 -0.3824 -2.9494 5.0532 20 6 -1.4425 -2.9510 5.8861 21 1 -1.5285 -2.1947 6.6523 22 6 -2.4225 -3.9236 5.7591 23 7 -2.3182 -4.8445 4.8255 24 14 -3.8917 -3.9254 6.9127 25 1 -3.7745 -2.7923 7.8654 26 1 -5.1411 -3.7804 6.1233 27 1 -3.9279 -5.2046 7.6662 28 6 1.5371 -1.7859 4.2634 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.4418 -0.5732 -1.2477 35 1 3.7936 0.9345 -2.1279 36 1 5.2109 -1.6305 -0.0005 37 1 6.8243 -0.8776 0.0085 38 1 6.0200 0.9667 1.4007 39 1 5.5315 -0.5626 2.1754 40 1 4.4000 -0.1016 3.8943 41 1 3.8665 -1.5814 3.0613 42 1 2.9511 1.0248 5.4776 43 1 1.0839 0.8127 7.0669 44 1 -0.4926 -1.0675 6.8731 45 1 -3.0040 -5.5247 4.7364 46 1 1.6651 -2.5142 3.4763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886866708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:42 Heat of formation + Delta-G solvation = -97.884372 kcal Electronic energy + Delta-G solvation = -29917.886625 eV Core-core repulsion = 25774.895555 eV Total energy + Delta-G solvation = -4142.991070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.75260 -39.04830 -38.24584 -37.32507 -36.35668 -34.77604 -32.89310 -32.24300 -31.58083 -29.22164 -28.66354 -26.97944 -26.65163 -25.44473 -25.17360 -23.08336 -22.35216 -21.53952 -20.68593 -19.13448 -17.58624 -17.40549 -16.97469 -16.68310 -16.53928 -15.69983 -15.50843 -15.43269 -15.08969 -14.97899 -14.87019 -14.40346 -14.32486 -14.08833 -13.75473 -13.56205 -13.36360 -13.10447 -12.61949 -12.50657 -12.34136 -12.12562 -11.79218 -11.70971 -11.68061 -11.47303 -11.23092 -11.08792 -10.93116 -10.78801 -10.70583 -10.56047 -10.39426 -10.35571 -9.65313 -9.28328 -8.82934 -8.78352 -8.51360 -7.99328 -7.16110 -6.39727 -3.98546 2.13812 2.44342 2.78590 2.89848 3.14993 3.16667 3.21922 3.54294 3.95637 4.00442 4.44772 4.47520 4.65945 4.76321 4.82748 4.93878 5.00606 5.04114 5.11600 5.21092 5.24185 5.33371 5.34010 5.46607 5.51954 5.52512 5.58353 5.69920 5.71485 5.80275 5.84573 5.92941 5.98659 6.09653 6.23281 6.40010 6.42804 6.71429 6.82744 6.97590 7.12819 7.33263 7.34046 7.41666 7.42688 7.49952 7.88508 8.05617 8.39403 9.06291 9.77890 10.78673 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.003033 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.789522 B = 9230.845083 C = 9905.982765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.378 6.378 3 C 0.055 3.945 4 C 0.120 3.880 5 H 0.087 0.913 6 C 0.052 3.948 7 O -0.383 6.383 8 C 0.046 3.954 9 C 0.074 3.926 10 N -0.621 5.621 11 C 0.528 3.472 12 O -0.499 6.499 13 C -0.093 4.093 14 C -0.030 4.030 15 C -0.197 4.197 16 C -0.075 4.075 17 C -0.232 4.232 18 C 0.155 3.845 19 O -0.181 6.181 20 C -0.390 4.390 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.864 5.864 24 Si 0.939 3.061 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.170 4.170 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.268 0.732 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 11.302 -9.013 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.297 6.297 3 C -0.021 4.021 4 C 0.017 3.983 5 H 0.105 0.895 6 C -0.025 4.025 7 O -0.301 6.301 8 C -0.032 4.032 9 C -0.049 4.049 10 N -0.358 5.358 11 C 0.317 3.683 12 O -0.373 6.373 13 C -0.133 4.133 14 C -0.031 4.031 15 C -0.216 4.216 16 C -0.093 4.093 17 C -0.251 4.251 18 C 0.102 3.898 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.764 3.236 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.190 4.190 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.367 11.026 -9.379 20.395 hybrid contribution -1.066 0.157 0.762 1.320 sum 13.301 11.183 -8.617 19.397 Atomic orbital electron populations 1.22574 0.80732 1.02560 0.99394 1.87789 1.19932 1.26642 1.95319 1.22824 0.90571 0.87395 1.01348 1.21967 0.94838 0.96189 0.85321 0.89480 1.23024 0.81726 1.00516 0.97235 1.87930 1.23974 1.72621 1.45553 1.23067 1.01342 0.93688 0.85088 1.22502 0.82263 1.00383 0.99748 1.48109 1.09712 1.60286 1.17725 1.20585 0.84856 0.80070 0.82824 1.90632 1.19331 1.49974 1.77329 1.20638 0.98285 1.00726 0.93630 1.18641 0.94839 0.94918 0.94675 1.20326 1.01412 1.00719 0.99128 1.20664 0.94215 0.96699 0.97766 1.21166 1.03371 0.98150 1.02408 1.19270 0.90417 0.87511 0.92634 1.83976 1.31797 1.37372 1.55292 1.21354 0.98249 1.14788 1.12209 0.89135 1.25261 0.98375 0.95269 0.97632 1.70051 1.34258 1.14351 1.31296 0.85670 0.80105 0.78556 0.79224 1.19145 1.20201 1.20195 1.19926 0.97032 1.00889 1.01137 0.93409 0.95285 0.90006 0.88576 0.94573 0.91211 0.88113 0.92224 0.87778 0.90620 0.88467 0.88774 0.88519 0.88092 0.87596 0.85706 0.92193 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.78 101.05 1.09 1.74 16 2 O -0.38 -5.90 7.87 -58.97 -0.46 -6.36 16 3 C 0.06 0.71 4.69 37.16 0.17 0.89 16 4 C 0.12 1.33 3.47 -67.42 -0.23 1.10 16 5 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 6 C 0.05 0.54 6.22 37.31 0.23 0.77 16 7 O -0.38 -3.95 10.74 -35.23 -0.38 -4.32 16 8 C 0.05 0.37 7.00 37.53 0.26 0.63 16 9 C 0.07 0.60 6.58 -3.32 -0.02 0.58 16 10 N -0.62 -7.23 3.00 -164.49 -0.49 -7.72 16 11 C 0.53 7.79 7.14 -10.99 -0.08 7.71 16 12 O -0.50 -9.10 10.74 -18.18 -0.20 -9.30 16 13 C -0.09 -1.27 4.20 -29.03 -0.12 -1.39 16 14 C -0.03 -0.55 4.37 -104.65 -0.46 -1.01 16 15 C -0.20 -3.56 9.70 -39.54 -0.38 -3.94 16 16 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 17 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 18 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 19 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 20 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 21 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 24 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 C -0.17 -3.76 9.65 -39.39 -0.38 -4.14 16 29 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.46 5.80 -52.28 -0.30 1.15 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.64 6.04 -51.93 -0.31 0.33 16 40 H 0.09 1.00 7.73 -51.93 -0.40 0.60 16 41 H 0.10 1.18 7.84 -51.93 -0.41 0.77 16 42 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -34.61 372.60 -7.50 -42.11 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.58 Total: 5.15 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.74 Total: -10.78 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.26 Total: -32.73 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -1.04 Total: -25.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.61 -7.50 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886866708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.772 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds