Wall clock time and date at job start Sat Apr 11 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.53006 * 110.71889 * 206.13300 * 12 11 10 15 15 N 1.46500 * 109.46719 * 179.97438 * 14 12 11 16 16 C 1.34781 * 119.99697 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99943 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.46965 * 179.97438 * 18 16 15 20 20 N 1.46492 * 109.46948 * 179.97438 * 19 18 16 21 21 C 1.34781 * 119.99926 * 180.02562 * 20 19 18 22 22 O 1.21687 * 119.99959 * 359.97438 * 21 20 19 23 23 C 1.46656 * 120.00011 * 180.02562 * 21 20 19 24 24 C 1.36540 * 125.98953 * 179.97438 * 23 21 20 25 25 C 1.40361 * 106.70939 * 179.97438 * 24 23 21 26 26 C 1.35124 * 107.11774 * 0.02562 * 25 24 23 27 27 O 1.33932 * 108.76577 * 359.76679 * 26 25 24 28 28 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 29 29 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 31 31 H 1.09001 * 110.43832 * 274.70471 * 10 9 7 32 32 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 33 33 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 34 34 H 1.08996 * 109.46429 * 299.97004 * 14 12 11 35 35 H 1.08997 * 109.47048 * 59.97457 * 14 12 11 36 36 H 0.97000 * 120.00631 * 359.97438 * 15 14 12 37 37 H 1.08998 * 109.46546 * 299.99292 * 18 16 15 38 38 H 1.08997 * 109.47358 * 59.99762 * 18 16 15 39 39 H 1.09000 * 109.46509 * 299.99896 * 19 18 16 40 40 H 1.08997 * 109.47048 * 59.99853 * 19 18 16 41 41 H 0.97000 * 120.00402 * 359.97438 * 20 19 18 42 42 H 1.08004 * 126.64709 * 359.97438 * 24 23 21 43 43 H 1.08001 * 126.44400 * 179.97438 * 25 24 23 44 44 H 1.08005 * 125.62072 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.88367 * 61.61048 * 28 9 7 46 46 H 1.09000 * 109.88319 * 300.59666 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1275 -5.9317 -0.9437 15 7 2.2453 -6.6840 -0.3686 16 6 2.7257 -7.7699 -1.0062 17 8 2.2323 -8.1244 -2.0559 18 6 3.8751 -8.5442 -0.4143 19 6 4.2222 -9.7207 -1.3289 20 7 5.3399 -10.4730 -0.7538 21 6 5.8204 -11.5588 -1.3916 22 8 5.3254 -11.9145 -2.4448 23 6 6.9390 -12.3123 -0.8156 24 6 7.5190 -13.4248 -1.3543 25 6 8.5434 -13.8114 -0.4761 26 6 8.5435 -12.9294 0.5476 27 8 7.5785 -12.0248 0.3371 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 -0.6042 -1.7636 -0.6122 31 1 -0.5298 -2.4942 1.0205 32 1 -0.3527 -3.9005 -1.7006 33 1 -1.3579 -4.3402 -0.2796 34 1 0.2606 -6.5853 -1.0394 35 1 1.4100 -5.5564 -1.9273 36 1 2.6402 -6.4002 0.4708 37 1 4.7420 -7.8905 -0.3179 38 1 3.5921 -8.9199 0.5689 39 1 3.3551 -10.3741 -1.4250 40 1 4.5050 -9.3453 -2.3123 41 1 5.7348 -10.1893 0.0855 42 1 7.2429 -13.9129 -2.2774 43 1 9.2063 -14.6556 -0.5956 44 1 9.2143 -12.9481 1.3939 45 1 2.5285 -3.8644 0.9012 46 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691168310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:31 Heat of formation + Delta-G solvation = -35.563861 kcal Electronic energy + Delta-G solvation = -27208.705790 eV Core-core repulsion = 23100.709891 eV Total energy + Delta-G solvation = -4107.995899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.14114 -40.12078 -39.52653 -37.71137 -35.67433 -34.68380 -33.55900 -32.60478 -31.73810 -30.23938 -29.64974 -28.23888 -25.86870 -24.87586 -23.49725 -22.64372 -22.16144 -20.98184 -20.64421 -19.97183 -19.64398 -18.93912 -17.37087 -16.86962 -16.83411 -16.71819 -16.27594 -16.01530 -15.75720 -15.23578 -14.83485 -14.63299 -14.52849 -13.79946 -13.74980 -13.58399 -13.48188 -13.38031 -13.11941 -12.78977 -12.54691 -12.28258 -11.86594 -11.80368 -11.68860 -11.51167 -10.98170 -10.84563 -10.76265 -10.55277 -10.48792 -10.16780 -10.04286 -9.96754 -9.78097 -9.61166 -9.54146 -9.14623 -9.02123 -8.68953 -6.86700 -5.68918 -3.10431 0.60020 1.88037 2.17246 2.55033 2.65296 2.77602 3.29127 3.37340 3.42755 3.45302 4.16657 4.35629 4.41896 4.45589 4.57247 4.70029 4.70367 5.05328 5.13486 5.14102 5.22201 5.28828 5.36912 5.39862 5.49379 5.52197 5.64591 5.65680 5.82397 5.85040 5.89121 6.03242 6.07711 6.30609 6.31807 6.39132 6.50688 6.55570 6.67752 6.86620 6.99735 7.45727 7.47635 7.59481 7.65171 7.82174 8.15323 8.32707 9.18305 9.79628 10.44612 11.35462 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.001622 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.613347 B =17259.750348 C =18193.214738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.515 3.485 17 O -0.540 6.540 18 C -0.155 4.155 19 C 0.134 3.866 20 N -0.721 5.721 21 C 0.603 3.397 22 O -0.514 6.514 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.225 4.225 26 C -0.006 4.006 27 O -0.165 6.165 28 C 0.141 3.859 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.017 0.983 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.876 -25.869 4.121 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.196 4.196 19 C 0.010 3.990 20 N -0.372 5.372 21 C 0.389 3.611 22 O -0.391 6.391 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.244 4.244 26 C -0.076 4.076 27 O -0.060 6.060 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.237 0.763 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.240 0.760 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.035 0.965 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.002 -25.852 2.768 29.070 hybrid contribution 1.075 0.952 1.002 1.751 sum 14.077 -24.900 3.770 28.851 Atomic orbital electron populations 1.69802 1.04896 1.24700 1.57609 1.24795 0.95742 0.97750 1.02421 0.86000 0.78629 0.83598 0.77272 1.20553 1.21697 1.21757 1.19117 0.90498 0.82466 1.43060 0.90473 1.44580 1.01957 0.99696 1.86844 1.21985 0.84662 0.92546 0.98177 1.23002 0.95524 0.98547 1.00366 1.22450 0.98346 0.94023 0.98588 0.90579 1.21476 0.88134 0.92229 0.97315 1.46071 1.36147 1.28684 1.26528 1.20219 0.84038 0.80849 0.84879 1.90751 1.60190 1.68142 1.22693 1.21814 0.98857 0.97884 1.01032 1.21131 0.88936 0.92015 0.96880 1.45873 1.36002 1.28752 1.26612 1.16499 0.80762 0.79956 0.83925 1.90926 1.58508 1.68083 1.21598 1.22087 1.00616 1.01301 0.89210 1.22023 0.95538 0.95280 1.01128 1.21899 1.02719 1.03633 0.96196 1.24452 0.92365 0.89472 1.01270 1.84058 1.39055 1.46702 1.36220 1.21315 0.93473 0.86061 0.97630 0.93750 0.87549 0.96936 0.91794 0.92086 0.91576 0.91156 0.76349 0.87905 0.88047 0.89967 0.89916 0.75983 0.82125 0.82489 0.77214 0.96517 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.11 55.49 0.56 -26.05 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.15 10.28 -15.05 -0.15 -6.30 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.15 3.41 -169.81 -0.58 -15.72 16 10 C 0.15 3.58 5.91 -2.35 -0.01 3.56 16 11 C -0.14 -2.44 6.53 -24.58 -0.16 -2.60 16 12 C -0.11 -1.82 3.02 -88.78 -0.27 -2.09 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.84 4.99 -4.04 -0.02 1.82 16 15 N -0.72 -8.25 5.40 -60.29 -0.33 -8.58 16 16 C 0.52 6.08 7.83 -10.98 -0.09 6.00 16 17 O -0.54 -8.71 15.98 5.55 0.09 -8.62 16 18 C -0.16 -1.15 5.81 -27.88 -0.16 -1.31 16 19 C 0.13 1.26 4.96 -4.04 -0.02 1.24 16 20 N -0.72 -5.87 5.55 -61.63 -0.34 -6.21 16 21 C 0.60 6.42 7.79 -12.86 -0.10 6.32 16 22 O -0.51 -7.34 16.86 5.20 0.09 -7.25 16 23 C -0.08 -0.72 7.13 -36.80 -0.26 -0.98 16 24 C -0.12 -0.95 10.62 -39.40 -0.42 -1.37 16 25 C -0.23 -1.25 10.87 -39.89 -0.43 -1.68 16 26 C -0.01 -0.03 12.08 29.62 0.36 0.33 16 27 O -0.16 -1.17 10.40 4.98 0.05 -1.12 16 28 C 0.14 2.76 6.52 -3.06 -0.02 2.74 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.40 3.68 8.33 -40.82 -0.34 3.34 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.41 2.20 8.23 -40.82 -0.34 1.86 16 42 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.21 0.12 8.06 -52.48 -0.42 -0.30 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -35.63 388.23 -8.32 -43.96 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.84 Total: 1.63 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.86 Total: 5.27 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.69 Total: -56.57 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.23 Total: -16.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.63 -8.32 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691168310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.395 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds