Wall clock time and date at job start Sat Apr 11 2020 04:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47057 * 270.00112 * 3 2 1 5 5 H 1.48507 * 109.46837 * 30.00169 * 3 2 1 6 6 H 1.48498 * 109.47196 * 149.99641 * 3 2 1 7 7 C 1.38954 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99402 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00222 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99813 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47337 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00297 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47481 * 180.02562 * 14 13 12 16 16 C 1.53780 * 113.61886 * 175.00405 * 15 14 13 17 17 C 1.53778 * 87.08223 * 139.97443 * 16 15 14 18 18 N 1.46503 * 113.61195 * 89.11708 * 17 16 15 19 19 C 1.34777 * 119.99907 * 156.52414 * 18 17 16 20 20 O 1.21284 * 119.99941 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99946 * 179.97438 * 19 18 17 22 22 C 1.50701 * 109.46955 * 180.02562 * 21 19 18 23 23 C 1.41381 * 126.57424 * 90.00355 * 22 21 19 24 24 C 1.34520 * 106.83580 * 179.72986 * 23 22 21 25 25 O 1.34302 * 108.42210 * 0.26485 * 24 23 22 26 26 C 1.34302 * 109.47622 * 359.97438 * 25 24 23 27 27 C 1.53779 * 87.17617 * 334.52485 * 17 16 15 28 28 H 0.96997 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00572 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47025 * 60.00292 * 12 10 9 31 31 H 1.08993 * 109.47137 * 300.00094 * 12 10 9 32 32 H 1.00896 * 111.00188 * 303.96250 * 13 12 10 33 33 H 1.08999 * 109.46862 * 59.99822 * 14 13 12 34 34 H 1.09010 * 109.47278 * 300.00616 * 14 13 12 35 35 H 1.09001 * 112.84787 * 43.79865 * 15 14 13 36 36 H 1.09004 * 113.61315 * 25.42662 * 16 15 14 37 37 H 1.08994 * 113.61040 * 254.53120 * 16 15 14 38 38 H 1.08999 * 113.61456 * 219.92943 * 17 16 15 39 39 H 0.96996 * 119.99724 * 336.53087 * 18 17 16 40 40 H 1.09007 * 109.46960 * 60.00376 * 21 19 18 41 41 H 1.08999 * 109.46970 * 300.00269 * 21 19 18 42 42 H 1.08002 * 126.58570 * 359.97438 * 23 22 21 43 43 H 1.08005 * 125.78720 * 180.29666 * 24 23 22 44 44 H 1.07999 * 125.79201 * 179.97438 * 26 25 24 45 45 H 1.08995 * 113.61204 * 140.02064 * 27 17 16 46 46 H 1.09000 * 113.61533 * 270.92811 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.4981 -7.2708 -0.0016 15 6 2.5229 -8.4068 -0.0015 16 6 1.8934 -9.8045 0.1213 17 6 2.9319 -10.2767 -0.9099 18 7 4.1880 -10.7342 -0.3104 19 6 4.9836 -11.5892 -0.9831 20 8 4.6599 -11.9795 -2.0849 21 6 6.2759 -12.0593 -0.3668 22 6 6.9720 -13.0005 -1.3160 23 6 7.9053 -12.6486 -2.3179 24 6 8.2769 -13.7912 -2.9228 25 8 7.6174 -14.8099 -2.3475 26 6 6.8222 -14.3359 -1.3745 27 6 2.9820 -8.8239 -1.4117 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6175 -4.9205 -0.8914 31 1 0.6168 -4.9209 0.8885 32 1 2.8333 -5.9121 -0.7828 33 1 0.8729 -7.3451 -0.8914 34 1 0.8733 -7.3454 0.8886 35 1 3.3447 -8.2354 0.6938 36 1 0.8661 -9.8539 -0.2397 37 1 2.0193 -10.2551 1.1057 38 1 2.5324 -10.9781 -1.6423 39 1 4.4470 -10.4218 0.5706 40 1 6.0650 -12.5769 0.5691 41 1 6.9183 -11.2009 -0.1705 42 1 8.2560 -11.6539 -2.5502 43 1 8.9858 -13.8752 -3.7333 44 1 6.1750 -14.9271 -0.7435 45 1 3.9863 -8.4836 -1.6639 46 1 2.2518 -8.6057 -2.1909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282002706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:18:55 Heat of formation + Delta-G solvation = -38.063322 kcal Electronic energy + Delta-G solvation = -26964.887121 eV Core-core repulsion = 22856.782837 eV Total energy + Delta-G solvation = -4108.104284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.84086 -40.47764 -38.77574 -38.13624 -35.23870 -34.29020 -33.87937 -33.24118 -31.21883 -30.71094 -28.82271 -27.87650 -25.99297 -25.52888 -23.78325 -22.26579 -21.90489 -21.64280 -20.36519 -19.53519 -19.09711 -17.88817 -17.82357 -17.43131 -16.41235 -16.07639 -16.06372 -15.63070 -15.51648 -15.04244 -14.99360 -14.52373 -14.25167 -14.04359 -13.82599 -13.70113 -13.44440 -13.11981 -13.07986 -12.87489 -12.73987 -12.63838 -12.29522 -11.91912 -11.70371 -11.54714 -11.50035 -11.06472 -10.97127 -10.64142 -10.39334 -10.32501 -10.28350 -10.20696 -9.85901 -9.50754 -9.27512 -8.83359 -8.45353 -8.04321 -7.95360 -6.41551 -3.82346 1.47826 2.21062 2.36626 2.83889 3.00127 3.17910 3.26455 3.32517 3.91506 4.06536 4.25473 4.27501 4.35545 4.43605 4.54857 4.58567 4.67800 4.71164 4.83297 5.02118 5.11965 5.14237 5.25632 5.33053 5.37458 5.45819 5.49389 5.55216 5.60367 5.67496 5.72393 5.79954 5.84540 5.87904 5.98803 6.00326 6.07990 6.17055 6.27581 6.40938 6.80612 7.21765 7.25029 7.55329 7.69191 7.97072 8.06758 8.61761 9.18160 9.54795 10.06386 10.76218 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.001526 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.568411 B =18345.735019 C =19269.331183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.068 3.932 15 C -0.105 4.105 16 C -0.139 4.139 17 C 0.120 3.880 18 N -0.713 5.713 19 C 0.515 3.485 20 O -0.531 6.531 21 C -0.071 4.071 22 C -0.164 4.164 23 C -0.199 4.199 24 C -0.044 4.044 25 O -0.178 6.178 26 C -0.028 4.028 27 C -0.150 4.150 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.349 0.651 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.402 0.598 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.202 0.798 44 H 0.199 0.801 45 H 0.072 0.928 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -28.098 -0.107 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.301 5.301 14 C -0.062 4.062 15 C -0.124 4.124 16 C -0.178 4.178 17 C 0.015 3.985 18 N -0.365 5.365 19 C 0.301 3.699 20 O -0.406 6.406 21 C -0.111 4.111 22 C -0.166 4.166 23 C -0.218 4.218 24 C -0.111 4.111 25 O -0.073 6.073 26 C -0.096 4.096 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.168 0.832 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.237 0.763 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.091 0.909 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.232 -28.503 -0.310 29.670 hybrid contribution -0.563 1.413 -0.445 1.585 sum 7.669 -27.090 -0.756 28.165 Atomic orbital electron populations 1.69612 1.05936 1.28139 1.50646 1.25262 0.95633 0.99711 0.97330 0.85855 0.79244 0.80802 0.78364 1.20436 1.20918 1.19416 1.19712 0.93384 0.82267 1.47585 0.87928 1.41865 1.09193 1.04611 1.64409 1.19834 0.88394 0.84752 0.84406 1.90518 1.13785 1.87091 1.55393 1.21672 0.94410 0.91065 1.01112 1.60074 1.18837 0.99947 1.51232 1.21952 0.95124 0.88803 1.00272 1.22671 0.98919 0.93185 0.97587 1.23329 0.98929 0.96115 0.99379 1.21805 0.84342 0.95916 0.96457 1.45701 1.21892 1.47509 1.21401 1.20627 0.85224 0.78262 0.85778 1.90727 1.73605 1.56444 1.19830 1.20000 0.93795 0.99512 0.97814 1.19773 1.01963 0.93781 1.01059 1.21696 1.01462 0.99719 0.98889 1.23977 1.00837 0.85068 1.01228 1.84060 1.45976 1.36672 1.40592 1.23767 0.97797 0.94251 0.93753 1.23569 1.02571 0.95563 0.97217 0.91887 0.77465 0.93990 0.89662 0.83217 0.95420 0.91064 0.88217 0.88733 0.90805 0.88290 0.76320 0.87972 0.87668 0.83541 0.78165 0.78398 0.90918 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 10 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 11 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.66 6.12 -115.06 -0.70 -11.36 16 14 C 0.07 0.79 5.52 -3.83 -0.02 0.77 16 15 C -0.10 -0.99 3.79 -89.66 -0.34 -1.33 16 16 C -0.14 -1.02 7.38 -25.92 -0.19 -1.21 16 17 C 0.12 1.05 4.29 -67.12 -0.29 0.76 16 18 N -0.71 -5.47 5.26 -53.02 -0.28 -5.75 16 19 C 0.51 4.89 7.82 -10.98 -0.09 4.81 16 20 O -0.53 -7.41 15.65 5.55 0.09 -7.33 16 21 C -0.07 -0.47 6.22 -29.03 -0.18 -0.65 16 22 C -0.16 -1.43 4.66 -104.74 -0.49 -1.92 16 23 C -0.20 -1.75 10.87 -39.70 -0.43 -2.18 16 24 C -0.04 -0.35 12.09 29.42 0.36 0.01 16 25 O -0.18 -1.63 10.65 5.71 0.06 -1.57 16 26 C -0.03 -0.23 12.01 29.42 0.35 0.13 16 27 C -0.15 -1.47 7.45 -25.77 -0.19 -1.66 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 33 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 1.01 7.50 -51.93 -0.39 0.62 16 39 H 0.40 2.12 8.70 -40.82 -0.36 1.76 16 40 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.20 0.86 8.06 -52.48 -0.42 0.43 16 44 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -35.70 395.12 -7.82 -43.52 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.80 Total: 13.93 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.87 Total: 0.72 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.32 Total: -55.42 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.24 Total: -24.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.70 -7.82 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.456 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds