Wall clock time and date at job start Sat Apr 11 2020 04:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35434 * 116.99595 * 2 1 4 4 N 1.32232 * 119.80043 * 359.72608 * 3 2 1 5 5 C 1.31878 * 121.80188 * 179.75126 * 4 3 2 6 6 C 1.50697 * 119.41136 * 180.29561 * 5 4 3 7 7 C 1.38357 * 121.18095 * 0.53205 * 5 4 3 8 8 C 1.38341 * 119.45959 * 359.73635 * 7 5 4 9 9 C 1.39983 * 118.34823 * 0.02562 * 8 7 5 10 10 C 1.47522 * 120.59723 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99750 * 224.98837 * 10 9 8 12 12 N 1.34770 * 120.00499 * 44.98209 * 10 9 8 13 13 C 1.47159 * 120.98181 * 5.59336 * 12 10 9 14 14 C 1.53290 * 108.38385 * 129.44157 * 13 12 10 15 15 O 1.42954 * 109.22747 * 52.30447 * 14 13 12 16 16 C 1.42965 * 114.16657 * 297.42157 * 15 14 13 17 17 H 1.08996 * 109.51089 * 302.65326 * 16 15 14 18 18 C 1.53001 * 109.51517 * 182.55364 * 16 15 14 19 19 N 1.46496 * 109.47238 * 64.99378 * 18 16 15 20 20 C 1.36933 * 120.00053 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00107 * 0.02562 * 20 19 18 22 22 C 1.38819 * 120.00048 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99972 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00074 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46854 * 90.00026 * 24 22 20 26 26 H 1.48496 * 109.47128 * 210.00161 * 24 22 20 27 27 H 1.48504 * 109.47074 * 330.00212 * 24 22 20 28 28 C 1.47151 * 120.98859 * 185.31117 * 12 10 9 29 29 H 1.09000 * 109.46548 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47390 * 60.00085 * 1 2 3 31 31 H 1.09002 * 109.46957 * 299.99543 * 1 2 3 32 32 H 1.09006 * 109.47091 * 270.22978 * 6 5 4 33 33 H 1.08994 * 109.47404 * 30.22831 * 6 5 4 34 34 H 1.08997 * 109.47253 * 150.23342 * 6 5 4 35 35 H 1.07999 * 120.26843 * 179.72412 * 7 5 4 36 36 H 1.08001 * 120.82628 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.68267 * 249.16608 * 13 12 10 38 38 H 1.08998 * 109.67861 * 9.68117 * 13 12 10 39 39 H 1.09009 * 109.51007 * 172.22849 * 14 13 12 40 40 H 1.08999 * 109.51133 * 292.37814 * 14 13 12 41 41 H 1.08993 * 109.47176 * 184.99963 * 18 16 15 42 42 H 1.09010 * 109.46794 * 304.99715 * 18 16 15 43 43 H 0.96996 * 120.00072 * 0.02562 * 19 18 16 44 44 H 0.96998 * 119.99908 * 180.02562 * 23 22 20 45 45 H 1.09005 * 109.67693 * 350.28271 * 28 12 10 46 46 H 1.08996 * 109.68279 * 110.82961 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3197 2.3132 -0.0055 5 6 1.8769 3.5085 -0.0008 6 6 0.9998 4.7339 -0.0007 7 6 3.2524 3.6576 -0.0009 8 6 4.0587 2.5334 -0.0005 9 6 3.4449 1.2753 -0.0004 10 6 4.2570 0.0437 -0.0005 11 8 3.9698 -0.8738 -0.7450 12 7 5.3172 -0.0646 0.8244 13 6 5.6128 0.9790 1.8190 14 6 5.8066 0.3062 3.1826 15 8 6.7699 -0.7426 3.0575 16 6 6.3776 -1.7951 2.1731 17 1 5.4309 -2.2185 2.5083 18 6 7.4514 -2.8850 2.1678 19 7 7.5275 -3.5021 3.4942 20 6 8.4236 -4.5103 3.7300 21 1 9.0746 -4.8502 2.9382 22 6 8.4953 -5.0954 4.9868 23 7 7.7015 -4.6815 5.9517 24 14 9.7183 -6.4702 5.3086 25 1 11.0022 -5.8906 5.7786 26 1 9.1765 -7.3814 6.3485 27 1 9.9486 -7.2316 4.0546 28 6 6.2099 -1.2326 0.7615 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 0.7882 5.0294 -1.0284 33 1 0.0646 4.5113 0.5131 34 1 1.5120 5.5473 0.5130 35 1 3.6931 4.6436 -0.0016 36 1 5.1348 2.6242 -0.0001 37 1 6.5239 1.5070 1.5373 38 1 4.7820 1.6826 1.8708 39 1 6.1612 1.0421 3.9045 40 1 4.8577 -0.1095 3.5216 41 1 7.1954 -3.6436 1.4282 42 1 8.4159 -2.4435 1.9166 43 1 6.9425 -3.1971 4.2053 44 1 7.7519 -5.0901 6.8300 45 1 5.7739 -1.9934 0.1139 46 1 7.1821 -0.9311 0.3716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733748708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:05 Heat of formation + Delta-G solvation = -51.596326 kcal Electronic energy + Delta-G solvation = -29190.779206 eV Core-core repulsion = 25082.088088 eV Total energy + Delta-G solvation = -4108.691119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39923 -39.97597 -38.38376 -38.15640 -35.12023 -34.39579 -33.51436 -32.18899 -32.09780 -30.16802 -29.02460 -28.12592 -27.18350 -25.52094 -23.71175 -23.50225 -23.10823 -22.21703 -20.89464 -19.84073 -18.47219 -17.66274 -17.29149 -17.05235 -16.60190 -16.27165 -15.97414 -15.41621 -15.18660 -14.90311 -14.65122 -14.54129 -14.48314 -14.25270 -14.12558 -13.60774 -13.22521 -13.09830 -13.02530 -12.82069 -12.68292 -12.61783 -12.38612 -12.16166 -12.03919 -11.60522 -11.36932 -10.98851 -10.86272 -10.77891 -10.47395 -10.40881 -10.20427 -10.04483 -9.88120 -9.76340 -9.63317 -8.83808 -8.83280 -8.51207 -6.86201 -5.69980 -2.98574 0.38307 0.84306 2.50426 2.72381 2.77179 3.32784 3.48193 3.52725 3.54761 3.68473 3.95922 4.22482 4.25000 4.54673 4.60895 4.72317 4.76530 4.85270 4.89549 5.00297 5.05398 5.06663 5.08244 5.10067 5.16636 5.31963 5.36199 5.42799 5.48951 5.51214 5.59110 5.62816 5.68378 5.71863 5.90745 5.95981 5.98142 6.29575 6.33553 6.59638 6.72435 6.87510 7.19633 7.40682 7.47976 7.74766 8.02972 8.48116 9.59727 10.17057 10.52893 11.52924 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.002391 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.041858 B =11707.728358 C =12067.488058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.285 6.285 3 C 0.373 3.627 4 N -0.543 5.543 5 C 0.189 3.811 6 C -0.108 4.108 7 C -0.218 4.218 8 C -0.007 4.007 9 C -0.209 4.209 10 C 0.573 3.427 11 O -0.519 6.519 12 N -0.609 5.609 13 C 0.068 3.932 14 C 0.046 3.954 15 O -0.357 6.357 16 C 0.073 3.927 17 H 0.064 0.936 18 C 0.164 3.836 19 N -0.727 5.727 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.087 3.913 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.030 0.970 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.103 0.897 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 23.057 -12.913 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.189 6.189 3 C 0.193 3.807 4 N -0.268 5.268 5 C 0.051 3.949 6 C -0.166 4.166 7 C -0.238 4.238 8 C -0.032 4.032 9 C -0.215 4.215 10 C 0.360 3.640 11 O -0.394 6.394 12 N -0.343 5.343 13 C -0.055 4.055 14 C -0.032 4.032 15 O -0.275 6.275 16 C 0.014 3.986 17 H 0.082 0.918 18 C 0.036 3.964 19 N -0.371 5.371 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.035 4.035 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.547 22.033 -13.258 29.544 hybrid contribution 0.869 -0.355 0.419 1.028 sum -13.679 21.678 -12.840 28.668 Atomic orbital electron populations 1.22956 0.76871 1.03509 1.02362 1.86407 1.23045 1.23435 1.86024 1.19693 0.87852 0.84955 0.88158 1.67250 1.40242 0.98185 1.21137 1.21177 0.92190 0.91931 0.89567 1.20823 0.99422 0.92719 1.03592 1.21738 0.93798 0.99913 1.08395 1.21670 1.00944 0.90047 0.90570 1.19830 0.91614 0.95196 1.14870 1.17788 0.79554 0.86265 0.80391 1.90812 1.68537 1.39535 1.40544 1.48030 1.27816 1.22619 1.35869 1.22686 1.02136 0.90904 0.89780 1.22905 0.94045 0.91155 0.95092 1.88155 1.42307 1.31663 1.65382 1.22724 0.99847 0.88338 0.87655 0.91824 1.20615 0.94574 0.90775 0.90463 1.42230 1.45543 1.41864 1.07462 1.19229 1.12414 1.09569 0.95711 0.91115 1.24750 0.99877 1.00326 0.96115 1.69677 1.40992 1.44873 1.02568 0.86170 0.80705 0.81710 0.77491 1.21744 1.21828 1.20756 1.22278 0.93817 0.88348 0.99094 0.88206 0.92112 0.92130 0.89777 0.90138 0.89994 0.83758 0.83387 0.90190 0.89163 0.87729 0.92860 0.94589 0.95243 0.77914 0.93580 0.87845 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.28 -3.94 9.42 -30.43 -0.29 -4.22 16 3 C 0.37 4.80 7.48 -16.61 -0.12 4.67 16 4 N -0.54 -5.89 9.11 -9.21 -0.08 -5.97 16 5 C 0.19 1.52 6.78 -82.53 -0.56 0.96 16 6 C -0.11 -0.49 10.16 36.00 0.37 -0.13 16 7 C -0.22 -1.50 9.71 -39.50 -0.38 -1.88 16 8 C -0.01 -0.06 7.65 -38.89 -0.30 -0.36 16 9 C -0.21 -2.57 4.96 -104.69 -0.52 -3.09 16 10 C 0.57 8.55 7.06 -12.48 -0.09 8.46 16 11 O -0.52 -9.62 15.85 -7.15 -0.11 -9.73 16 12 N -0.61 -8.27 3.03 -173.77 -0.53 -8.79 16 13 C 0.07 0.72 5.26 -3.53 -0.02 0.70 16 14 C 0.05 0.60 6.98 37.31 0.26 0.86 16 15 O -0.36 -6.33 10.33 -35.23 -0.36 -6.69 16 16 C 0.07 1.30 2.80 -26.80 -0.07 1.22 16 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.16 3.44 5.93 -4.04 -0.02 3.42 16 19 N -0.73 -19.30 5.55 -59.91 -0.33 -19.63 16 20 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 24 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.09 1.30 5.92 -3.75 -0.02 1.28 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.95 7.12 -52.49 -0.37 0.57 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.79 5.22 -51.93 -0.27 0.52 16 39 H 0.10 1.11 8.14 -51.92 -0.42 0.68 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.39 10.93 7.67 -40.82 -0.31 10.62 16 44 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.10 1.63 7.06 -51.93 -0.37 1.27 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -37.00 380.74 -7.73 -44.73 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.78 Total: 5.00 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -0.68 Total: 9.98 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.22 Total: -62.70 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.76 Total: -20.65 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.00 -7.73 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733748708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.869 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds