Wall clock time and date at job start Sat Apr 11 2020 04:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99857 * 2 1 4 4 O 1.20817 * 120.00342 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99695 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.63908 * 32.07874 * 5 3 2 7 7 C 1.55153 * 110.71717 * 155.21537 * 5 3 2 8 8 C 1.54910 * 101.57941 * 154.04448 * 7 5 3 9 9 N 1.47416 * 104.83266 * 322.99146 * 8 7 5 10 10 C 1.34781 * 125.65051 * 204.09117 * 9 8 7 11 11 O 1.21604 * 119.99891 * 184.21785 * 10 9 8 12 12 C 1.47428 * 119.99579 * 4.21649 * 10 9 8 13 13 C 1.41289 * 126.41973 * 326.71307 * 12 10 9 14 14 N 1.30451 * 108.02396 * 179.71943 * 13 12 10 15 15 N 1.39935 * 108.89728 * 0.44599 * 14 13 12 16 16 C 1.46492 * 125.75266 * 179.80897 * 15 14 13 17 17 C 1.50707 * 109.47181 * 269.69358 * 16 15 14 18 18 H 1.08003 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00025 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46943 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46885 * 60.00018 * 21 19 17 24 24 H 1.48501 * 109.47134 * 300.00011 * 21 19 17 25 25 C 1.34270 * 108.48981 * 359.54754 * 15 14 13 26 26 C 1.50699 * 126.28813 * 180.26180 * 25 15 14 27 27 C 1.47024 * 108.70369 * 24.35717 * 9 8 7 28 28 H 1.09001 * 109.88359 * 118.12700 * 27 9 8 29 29 C 1.53002 * 109.88047 * 239.29683 * 27 9 8 30 30 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46935 * 300.00154 * 1 2 3 32 32 H 1.09000 * 109.47164 * 60.00168 * 1 2 3 33 33 H 1.09000 * 111.00827 * 35.97395 * 7 5 3 34 34 H 1.09000 * 111.04060 * 272.13539 * 7 5 3 35 35 H 1.09007 * 110.36880 * 204.15197 * 8 7 5 36 36 H 1.09002 * 110.36666 * 81.83273 * 8 7 5 37 37 H 1.08000 * 125.98267 * 0.02562 * 13 12 10 38 38 H 1.09005 * 109.47280 * 149.69670 * 16 15 14 39 39 H 1.08998 * 109.47519 * 29.69516 * 16 15 14 40 40 H 0.96997 * 120.00249 * 359.97438 * 20 19 17 41 41 H 1.08999 * 109.46720 * 89.97626 * 26 25 15 42 42 H 1.08995 * 109.46734 * 209.97563 * 26 25 15 43 43 H 1.09000 * 109.47231 * 329.97647 * 26 25 15 44 44 H 1.08990 * 109.47538 * 54.93098 * 29 27 9 45 45 H 1.09002 * 109.46895 * 174.93339 * 29 27 9 46 46 H 1.09005 * 109.46984 * 294.92784 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9955 0.4317 -0.5408 7 6 4.0458 2.6191 -0.6079 8 6 5.4244 2.7959 0.0761 9 7 5.2347 2.2841 1.4455 10 6 5.9683 2.6300 2.5220 11 8 5.7720 2.0860 3.5918 12 6 7.0086 3.6677 2.4026 13 6 7.8105 3.9249 1.2680 14 7 8.6038 4.9208 1.5518 15 7 8.3583 5.3357 2.8656 16 6 9.0464 6.4255 3.5617 17 6 10.2544 5.8799 4.2790 18 1 10.4860 4.8265 4.2222 19 6 11.0632 6.7253 5.0085 20 7 10.7803 8.0077 5.0788 21 14 12.5600 6.0489 5.8980 22 1 13.2577 7.1537 6.6036 23 1 13.4834 5.4301 4.9132 24 1 12.1293 5.0252 6.8838 25 6 7.3817 4.5701 3.3784 26 6 6.8000 4.6764 4.7645 27 6 4.1169 1.3292 1.4413 28 1 4.4705 0.3431 1.7425 29 6 3.0212 1.8065 2.3966 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.3703 3.4319 -0.3410 34 1 4.1533 2.5427 -1.6898 35 1 5.7038 3.8493 0.1001 36 1 6.1839 2.2130 -0.4449 37 1 7.7699 3.3936 0.3287 38 1 8.3690 6.8798 4.2849 39 1 9.3622 7.1769 2.8380 40 1 10.0028 8.3589 4.6172 41 1 5.9570 5.3673 4.7526 42 1 6.4601 3.6940 5.0921 43 1 7.5621 5.0448 5.4512 44 1 2.7235 2.8206 2.1304 45 1 2.1594 1.1433 2.3214 46 1 3.4000 1.7954 3.4186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897520708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:10 Heat of formation + Delta-G solvation = -50.128112 kcal Electronic energy + Delta-G solvation = -29348.791513 eV Core-core repulsion = 25240.164061 eV Total energy + Delta-G solvation = -4108.627452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39864 -40.82914 -39.49119 -37.46298 -36.57429 -34.26688 -32.66984 -32.01179 -31.50076 -30.95245 -28.52048 -27.15892 -26.65165 -26.36828 -23.97795 -23.31725 -22.89297 -21.32610 -20.40784 -19.62109 -18.65090 -17.93365 -17.41953 -17.04409 -16.99297 -16.62698 -15.78661 -15.61006 -15.21077 -14.67003 -14.30974 -14.07004 -13.90563 -13.78296 -13.60128 -13.44948 -13.23465 -12.85265 -12.68408 -12.59499 -12.43618 -12.34589 -12.27803 -12.13340 -11.99456 -11.65735 -11.61861 -11.25690 -11.21114 -11.16341 -11.14586 -10.82023 -10.72889 -10.29952 -10.21448 -9.52653 -9.47983 -8.72569 -8.66374 -8.53679 -7.95288 -6.68118 -4.44683 1.78104 2.12605 2.24850 2.71651 2.91770 3.28407 3.33986 3.35124 3.54209 3.62905 3.96277 4.08785 4.34022 4.40153 4.69456 4.71953 4.76277 4.79804 4.91974 4.99249 5.07454 5.11138 5.12421 5.15814 5.27297 5.34583 5.41485 5.50250 5.52818 5.63082 5.80063 5.80542 5.84690 5.92620 5.97255 6.11461 6.28135 6.37412 6.45225 6.55735 6.60637 7.03116 7.36426 7.54008 7.56442 7.57587 8.16362 8.28178 8.44669 8.48100 9.24297 10.69443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.002382 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.366059 B =11751.480916 C =12018.056931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.478 3.522 4 O -0.499 6.499 5 C -0.097 4.097 6 H 0.118 0.882 7 C -0.120 4.120 8 C 0.099 3.901 9 N -0.616 5.616 10 C 0.625 3.375 11 O -0.544 6.544 12 C -0.325 4.325 13 C 0.057 3.943 14 N -0.295 5.295 15 N -0.311 5.311 16 C 0.243 3.757 17 C -0.619 4.619 18 H 0.060 0.940 19 C 0.028 3.972 20 N -0.898 5.898 21 Si 1.075 2.925 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.161 3.839 26 C -0.103 4.103 27 C 0.157 3.843 28 H 0.089 0.911 29 C -0.171 4.171 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.178 0.822 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 -14.367 -11.697 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.321 3.679 4 O -0.386 6.386 5 C -0.117 4.117 6 H 0.136 0.864 7 C -0.158 4.158 8 C -0.024 4.024 9 N -0.352 5.352 10 C 0.417 3.583 11 O -0.422 6.422 12 C -0.340 4.340 13 C -0.130 4.130 14 N -0.115 5.115 15 N -0.087 5.087 16 C 0.125 3.875 17 C -0.657 4.657 18 H 0.079 0.921 19 C -0.178 4.178 20 N -0.533 5.533 21 Si 0.902 3.098 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.024 3.976 26 C -0.161 4.161 27 C 0.053 3.947 28 H 0.107 0.893 29 C -0.229 4.229 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.195 0.805 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.405 -12.970 -10.452 23.379 hybrid contribution -2.114 -0.965 -0.980 2.522 sum -18.520 -13.935 -11.432 25.843 Atomic orbital electron populations 1.23297 0.76136 1.03823 1.02674 1.86527 1.23578 1.33353 1.84041 1.23183 0.91348 0.81466 0.71931 1.90681 1.66823 1.36263 1.44795 1.22180 0.88061 1.02250 0.99204 0.86376 1.22890 0.96920 0.95426 1.00575 1.22488 0.96553 1.01266 0.82065 1.48274 1.33219 1.44834 1.08828 1.16980 0.79096 0.80530 0.81652 1.90707 1.69661 1.54592 1.27192 1.19524 1.09668 1.07789 0.97026 1.23849 0.94721 0.96134 0.98246 1.77147 1.23003 1.15663 0.95695 1.49059 1.24935 1.25994 1.08753 1.19860 0.93005 0.83081 0.91586 1.22124 1.11113 0.97550 1.34892 0.92145 1.25930 1.01903 0.94137 0.95783 1.70850 1.28162 1.13108 1.41182 0.83437 0.74765 0.75410 0.76212 1.20375 1.21091 1.21006 1.21356 0.89510 0.91159 0.95579 1.20629 1.00832 1.04544 0.90062 1.21196 0.87407 0.94188 0.91874 0.89333 1.22296 0.97109 1.01855 1.01621 0.87979 0.91767 0.91811 0.88645 0.88958 0.89052 0.90758 0.80478 0.93714 0.93502 0.92150 0.90773 0.88502 0.89595 0.91541 0.92491 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.04 10.57 -39.25 -0.41 -3.46 16 3 C 0.48 4.58 4.97 36.01 0.18 4.75 16 4 O -0.50 -5.98 14.95 -18.74 -0.28 -6.26 16 5 C -0.10 -0.80 3.36 -89.93 -0.30 -1.10 16 6 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.12 -0.95 6.40 -24.58 -0.16 -1.11 16 8 C 0.10 0.93 5.35 -2.53 -0.01 0.92 16 9 N -0.62 -7.80 3.08 -164.27 -0.51 -8.30 16 10 C 0.63 10.45 7.42 -12.52 -0.09 10.35 16 11 O -0.54 -10.40 14.49 5.27 0.08 -10.32 16 12 C -0.32 -5.94 5.67 -105.07 -0.60 -6.53 16 13 C 0.06 0.99 10.06 -16.98 -0.17 0.82 16 14 N -0.29 -6.32 12.50 30.86 0.39 -5.93 16 15 N -0.31 -7.02 3.56 -57.77 -0.21 -7.23 16 16 C 0.24 5.98 5.10 -5.19 -0.03 5.96 16 17 C -0.62 -16.87 9.39 -34.44 -0.32 -17.19 16 18 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 19 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 20 N -0.90 -25.56 13.65 55.43 0.76 -24.81 16 21 Si 1.08 24.37 29.90 -169.99 -5.08 19.29 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.16 3.27 7.00 -81.60 -0.57 2.70 16 26 C -0.10 -1.84 9.66 36.01 0.35 -1.50 16 27 C 0.16 1.69 3.42 -66.95 -0.23 1.47 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 C -0.17 -2.01 8.07 37.16 0.30 -1.71 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.10 0.92 7.23 -51.93 -0.38 0.55 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.94 6.55 -51.92 -0.34 0.60 16 36 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 37 H 0.18 2.28 6.44 -52.49 -0.34 1.94 16 38 H 0.05 1.08 7.49 -51.93 -0.39 0.69 16 39 H 0.05 1.21 8.01 -51.93 -0.42 0.79 16 40 H 0.27 7.48 7.22 -40.82 -0.29 7.18 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.10 1.72 6.53 -51.93 -0.34 1.38 16 43 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 44 H 0.07 0.85 7.83 -51.93 -0.41 0.45 16 45 H 0.06 0.60 6.87 -51.93 -0.36 0.24 16 46 H 0.08 1.10 6.98 -51.93 -0.36 0.74 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -33.53 377.22 -6.85 -40.38 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.58 Total: 1.18 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.69 Total: -0.24 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.43 Total: -46.27 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.62 Total: -20.04 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.53 -6.85 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897520708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.745 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds