Wall clock time and date at job start Sat Apr 11 2020 04:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99857 * 2 1 4 4 O 1.20817 * 120.00342 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99695 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.63908 * 32.07874 * 5 3 2 7 7 C 1.55153 * 110.71717 * 155.21537 * 5 3 2 8 8 C 1.54910 * 101.57941 * 154.04448 * 7 5 3 9 9 N 1.47416 * 104.83266 * 322.99146 * 8 7 5 10 10 C 1.34781 * 125.65051 * 204.09117 * 9 8 7 11 11 O 1.21604 * 119.99891 * 184.21785 * 10 9 8 12 12 C 1.47428 * 119.99579 * 4.21649 * 10 9 8 13 13 C 1.41289 * 126.41973 * 326.71307 * 12 10 9 14 14 N 1.30451 * 108.02396 * 179.71943 * 13 12 10 15 15 N 1.39935 * 108.89728 * 0.44599 * 14 13 12 16 16 C 1.46492 * 125.75266 * 179.80897 * 15 14 13 17 17 C 1.50707 * 109.47181 * 269.69358 * 16 15 14 18 18 H 1.08003 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00025 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99860 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46943 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46885 * 60.00018 * 21 19 17 24 24 H 1.48501 * 109.47134 * 300.00011 * 21 19 17 25 25 C 1.34270 * 108.48981 * 359.54754 * 15 14 13 26 26 C 1.50699 * 126.28813 * 180.26180 * 25 15 14 27 27 C 1.47024 * 108.70369 * 24.35717 * 9 8 7 28 28 H 1.09001 * 109.88359 * 118.12700 * 27 9 8 29 29 C 1.53002 * 109.88047 * 239.29683 * 27 9 8 30 30 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46935 * 300.00154 * 1 2 3 32 32 H 1.09000 * 109.47164 * 60.00168 * 1 2 3 33 33 H 1.09000 * 111.00827 * 35.97395 * 7 5 3 34 34 H 1.09000 * 111.04060 * 272.13539 * 7 5 3 35 35 H 1.09007 * 110.36880 * 204.15197 * 8 7 5 36 36 H 1.09002 * 110.36666 * 81.83273 * 8 7 5 37 37 H 1.08000 * 125.98267 * 0.02562 * 13 12 10 38 38 H 1.09005 * 109.47280 * 149.69670 * 16 15 14 39 39 H 1.08998 * 109.47519 * 29.69516 * 16 15 14 40 40 H 0.96997 * 120.00249 * 359.97438 * 20 19 17 41 41 H 1.08999 * 109.46720 * 89.97626 * 26 25 15 42 42 H 1.08995 * 109.46734 * 209.97563 * 26 25 15 43 43 H 1.09000 * 109.47231 * 329.97647 * 26 25 15 44 44 H 1.08990 * 109.47538 * 54.93098 * 29 27 9 45 45 H 1.09002 * 109.46895 * 174.93339 * 29 27 9 46 46 H 1.09005 * 109.46984 * 294.92784 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9955 0.4317 -0.5408 7 6 4.0458 2.6191 -0.6079 8 6 5.4244 2.7959 0.0761 9 7 5.2347 2.2841 1.4455 10 6 5.9683 2.6300 2.5220 11 8 5.7720 2.0860 3.5918 12 6 7.0086 3.6677 2.4026 13 6 7.8105 3.9249 1.2680 14 7 8.6038 4.9208 1.5518 15 7 8.3583 5.3357 2.8656 16 6 9.0464 6.4255 3.5617 17 6 10.2544 5.8799 4.2790 18 1 10.4860 4.8265 4.2222 19 6 11.0632 6.7253 5.0085 20 7 10.7803 8.0077 5.0788 21 14 12.5600 6.0489 5.8980 22 1 13.2577 7.1537 6.6036 23 1 13.4834 5.4301 4.9132 24 1 12.1293 5.0252 6.8838 25 6 7.3817 4.5701 3.3784 26 6 6.8000 4.6764 4.7645 27 6 4.1169 1.3292 1.4413 28 1 4.4705 0.3431 1.7425 29 6 3.0212 1.8065 2.3966 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.3703 3.4319 -0.3410 34 1 4.1533 2.5427 -1.6898 35 1 5.7038 3.8493 0.1001 36 1 6.1839 2.2130 -0.4449 37 1 7.7699 3.3936 0.3287 38 1 8.3690 6.8798 4.2849 39 1 9.3622 7.1769 2.8380 40 1 10.0028 8.3589 4.6172 41 1 5.9570 5.3673 4.7526 42 1 6.4601 3.6940 5.0921 43 1 7.5621 5.0448 5.4512 44 1 2.7235 2.8206 2.1304 45 1 2.1594 1.1433 2.3214 46 1 3.4000 1.7954 3.4186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897520708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:09 Heat of formation + Delta-G solvation = -71.136603 kcal Electronic energy + Delta-G solvation = -29349.702509 eV Core-core repulsion = 25240.164061 eV Total energy + Delta-G solvation = -4109.538449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52175 -41.97093 -40.53336 -38.50370 -37.38031 -36.20473 -34.09438 -33.37394 -32.58072 -32.24628 -29.29017 -28.68441 -28.20239 -27.20378 -25.55927 -24.75760 -23.70820 -22.59016 -21.60052 -20.66070 -19.95592 -19.28491 -18.68728 -18.29896 -17.71661 -17.47549 -16.95708 -16.81622 -16.51839 -16.14932 -15.74024 -15.51181 -15.12777 -14.84609 -14.65106 -14.46273 -14.39000 -14.09220 -13.94619 -13.76135 -13.74369 -13.59817 -13.36014 -13.33488 -13.13346 -13.04251 -12.94344 -12.61404 -12.54622 -12.03619 -11.97465 -11.87443 -11.81248 -11.78425 -11.49440 -11.38679 -10.87827 -10.73925 -10.27478 -9.79754 -9.48006 -8.84788 -6.63668 0.62631 1.04016 1.27853 1.46382 1.50539 1.55552 1.64726 1.77809 2.00882 2.32384 2.45478 2.95801 3.22782 3.33967 3.63238 3.67354 3.74206 3.98279 4.03862 4.07914 4.11631 4.22901 4.25749 4.30707 4.34164 4.39697 4.41839 4.46841 4.50745 4.60811 4.68893 4.72110 4.73089 4.88193 4.89864 4.93785 5.03471 5.10239 5.17151 5.35192 5.37269 5.48970 5.59617 5.74175 6.09576 6.31225 6.43001 6.67866 6.73324 7.12589 7.18148 8.52549 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.002382 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.366059 B =11751.480916 C =12018.056931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.479 3.521 4 O -0.528 6.528 5 C -0.087 4.087 6 H 0.154 0.846 7 C -0.112 4.112 8 C 0.090 3.910 9 N -0.610 5.610 10 C 0.624 3.376 11 O -0.575 6.575 12 C -0.322 4.322 13 C 0.081 3.919 14 N -0.334 5.334 15 N -0.336 5.336 16 C 0.256 3.744 17 C -0.628 4.628 18 H 0.043 0.957 19 C -0.013 4.013 20 N -0.917 5.917 21 Si 1.118 2.882 22 H -0.274 1.274 23 H -0.274 1.274 24 H -0.269 1.269 25 C 0.139 3.861 26 C -0.095 4.095 27 C 0.153 3.847 28 H 0.096 0.904 29 C -0.163 4.163 30 H 0.131 0.869 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 -16.740 -13.603 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.323 3.677 4 O -0.417 6.417 5 C -0.107 4.107 6 H 0.172 0.828 7 C -0.150 4.150 8 C -0.031 4.031 9 N -0.343 5.343 10 C 0.415 3.585 11 O -0.456 6.456 12 C -0.337 4.337 13 C -0.105 4.105 14 N -0.154 5.154 15 N -0.113 5.113 16 C 0.136 3.864 17 C -0.666 4.666 18 H 0.061 0.939 19 C -0.214 4.214 20 N -0.553 5.553 21 Si 0.938 3.062 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.194 1.194 25 C 0.004 3.996 26 C -0.153 4.153 27 C 0.049 3.951 28 H 0.114 0.886 29 C -0.221 4.221 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.242 0.758 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.994 -15.366 -12.408 26.056 hybrid contribution -2.134 -0.323 -0.487 2.212 sum -19.128 -15.689 -12.895 27.898 Atomic orbital electron populations 1.23556 0.74831 1.05730 1.02498 1.86521 1.24903 1.32652 1.83557 1.23429 0.91855 0.81316 0.71103 1.90681 1.67600 1.37279 1.46166 1.22213 0.87221 1.03803 0.97453 0.82823 1.22867 0.95243 0.94495 1.02387 1.22817 0.98568 1.01305 0.80437 1.48230 1.32502 1.44375 1.09189 1.16747 0.79271 0.80236 0.82257 1.90693 1.70548 1.55662 1.28668 1.19807 1.09911 1.07286 0.96679 1.24568 0.92299 0.94342 0.99328 1.77099 1.25076 1.17754 0.95482 1.48814 1.26230 1.26684 1.09580 1.19431 0.92453 0.83498 0.90990 1.22287 1.12281 0.96725 1.35331 0.93860 1.27266 1.04179 0.93856 0.96108 1.70943 1.28388 1.13861 1.42071 0.82913 0.72096 0.75369 0.75831 1.19912 1.19991 1.19445 1.21853 0.89357 0.91530 0.96831 1.20595 1.00836 1.04997 0.88859 1.21348 0.86390 0.93794 0.93534 0.88562 1.22193 0.97942 1.01347 1.00665 0.85093 0.92376 0.91627 0.90799 0.85555 0.89923 0.87357 0.75795 0.93754 0.95353 0.92942 0.88862 0.88333 0.91162 0.93026 0.91359 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.17 10.57 -51.39 -0.54 -5.71 16 3 C 0.48 8.04 4.97 71.24 0.35 8.39 16 4 O -0.53 -11.99 14.95 21.99 0.33 -11.66 16 5 C -0.09 -1.13 3.36 -10.35 -0.03 -1.16 16 6 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 7 C -0.11 -1.38 6.40 31.99 0.20 -1.18 16 8 C 0.09 1.38 5.35 86.86 0.46 1.84 16 9 N -0.61 -14.07 3.08 -791.88 -2.44 -16.50 16 10 C 0.62 20.16 7.42 86.66 0.64 20.81 16 11 O -0.58 -21.87 14.49 -4.04 -0.06 -21.93 16 12 C -0.32 -11.50 5.67 -20.15 -0.11 -11.61 16 13 C 0.08 2.66 10.06 85.65 0.86 3.53 16 14 N -0.33 -14.26 12.50 -56.27 -0.70 -14.97 16 15 N -0.34 -15.52 3.56 -336.69 -1.20 -16.72 16 16 C 0.26 13.10 5.10 85.64 0.44 13.53 16 17 C -0.63 -35.15 9.39 25.60 0.24 -34.91 16 18 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 19 C -0.01 -0.74 5.46 84.66 0.46 -0.28 16 20 N -0.92 -53.13 13.65 21.45 0.29 -52.84 16 21 Si 1.12 49.02 29.90 68.60 2.05 51.08 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 C 0.14 5.75 7.00 42.14 0.29 6.04 16 26 C -0.09 -3.50 9.66 71.24 0.69 -2.81 16 27 C 0.15 2.94 3.42 45.34 0.16 3.10 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 C -0.16 -3.76 8.07 71.98 0.58 -3.17 16 30 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.65 8.13 -2.38 -0.02 0.63 16 32 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 33 H 0.07 1.29 7.23 -2.39 -0.02 1.27 16 34 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.46 6.55 -2.38 -0.02 1.44 16 36 H 0.11 1.01 7.69 -2.39 -0.02 0.99 16 37 H 0.23 4.88 6.44 -2.91 -0.02 4.86 16 38 H 0.04 2.24 7.49 -2.38 -0.02 2.22 16 39 H 0.03 1.54 8.01 -2.39 -0.02 1.52 16 40 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 41 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.10 3.58 6.53 -2.39 -0.02 3.57 16 43 H 0.07 2.78 7.70 -2.39 -0.02 2.76 16 44 H 0.05 1.32 7.83 -2.39 -0.02 1.30 16 45 H 0.07 1.37 6.87 -2.39 -0.02 1.36 16 46 H 0.06 1.61 6.98 -2.38 -0.02 1.59 16 Total: -1.00 -75.34 377.22 5.26 -70.07 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.10 Total: 15.61 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.43 Total: 3.57 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -4.05 Total: -101.03 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.27 Total: -39.30 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.08 kcal Total: -75.34 5.26 -70.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897520708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.062 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds