Wall clock time and date at job start Sat Apr 11 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35125 * 125.61726 * 2 1 4 4 C 1.40358 * 107.11466 * 179.78182 * 3 2 1 5 5 C 1.36543 * 106.70619 * 0.40690 * 4 3 2 6 6 C 1.46663 * 125.98669 * 179.85483 * 5 4 3 7 7 O 1.21696 * 120.00030 * 359.71405 * 6 5 4 8 8 N 1.34775 * 119.99830 * 179.71950 * 6 5 4 9 9 C 1.46502 * 119.99835 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46991 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.27298 * 307.09066 * 10 9 8 12 12 C 1.54591 * 110.30739 * 69.28447 * 10 9 8 13 13 C 1.54935 * 102.92137 * 140.87223 * 12 10 9 14 14 N 1.48540 * 103.22769 * 322.58331 * 13 12 10 15 15 C 1.46904 * 110.99947 * 159.72020 * 14 13 12 16 16 C 1.50697 * 109.46892 * 52.60416 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47025 * 89.99899 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00610 * 23 21 19 26 26 H 1.48511 * 109.46991 * 330.00512 * 23 21 19 27 27 C 1.47900 * 105.81665 * 39.21034 * 14 13 12 28 28 O 1.33928 * 125.61120 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47397 * 299.98753 * 1 2 3 31 31 H 1.09002 * 109.47081 * 59.98366 * 1 2 3 32 32 H 1.08000 * 126.44438 * 0.02768 * 3 2 1 33 33 H 1.08006 * 126.64801 * 180.30213 * 4 3 2 34 34 H 0.96999 * 120.00371 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47080 * 59.99935 * 9 8 6 36 36 H 1.08998 * 109.46964 * 299.99786 * 9 8 6 37 37 H 1.08993 * 110.72626 * 259.22928 * 12 10 9 38 38 H 1.09006 * 110.72744 * 22.51879 * 12 10 9 39 39 H 1.09005 * 110.66793 * 204.15512 * 13 12 10 40 40 H 1.08997 * 110.67329 * 81.02270 * 13 12 10 41 41 H 1.09001 * 109.46900 * 292.61076 * 15 14 13 42 42 H 1.08993 * 109.47169 * 172.60797 * 15 14 13 43 43 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 44 44 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 45 45 H 1.08991 * 109.92197 * 94.02129 * 27 14 13 46 46 H 1.09005 * 109.91623 * 215.12120 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 0.0051 5 6 3.5822 -0.7117 -0.0013 6 6 4.7414 -1.6102 -0.0022 7 8 5.8680 -1.1501 -0.0021 8 7 4.5588 -2.9456 -0.0031 9 6 5.7167 -3.8431 -0.0045 10 6 5.2360 -5.2957 -0.0047 11 1 4.5327 -5.4608 0.8114 12 6 4.5793 -5.6433 -1.3604 13 6 5.0698 -7.0895 -1.6222 14 7 6.4648 -7.0728 -1.1124 15 6 6.9381 -8.4343 -0.8290 16 6 6.7257 -9.3026 -2.0422 17 8 6.2245 -8.8348 -3.0428 18 7 7.0882 -10.6005 -2.0139 19 6 6.8899 -11.3918 -3.1156 20 1 6.4428 -10.9754 -4.0062 21 6 7.2641 -12.7297 -3.0866 22 7 7.8076 -13.2366 -2.0028 23 14 6.9933 -13.8082 -4.5875 24 1 8.1919 -13.7490 -5.4623 25 1 6.7648 -15.2102 -4.1550 26 1 5.8078 -13.3224 -5.3387 27 6 6.4341 -6.2552 0.1197 28 8 2.2869 -1.0888 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5136 0.8901 31 1 -0.3633 0.5141 -0.8899 32 1 1.9613 2.1260 0.0004 33 1 4.5113 1.2702 0.0111 34 1 3.6609 -3.3124 -0.0028 35 1 6.3192 -3.6603 0.8852 36 1 6.3181 -3.6589 -0.8947 37 1 3.4927 -5.6129 -1.2817 38 1 4.9295 -4.9698 -2.1426 39 1 5.0526 -7.3144 -2.6886 40 1 4.4658 -7.8071 -1.0669 41 1 6.3811 -8.8446 0.0134 42 1 7.9997 -8.4063 -0.5835 43 1 7.4894 -10.9746 -1.2138 44 1 8.0692 -14.1703 -1.9826 45 1 6.3053 -6.8991 0.9896 46 1 7.3601 -5.6876 0.2119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731839708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:04 Heat of formation + Delta-G solvation = -51.215815 kcal Electronic energy + Delta-G solvation = -27685.691755 eV Core-core repulsion = 23577.017137 eV Total energy + Delta-G solvation = -4108.674618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.08345 -39.94947 -39.12984 -37.64581 -35.24801 -33.95623 -33.66238 -32.50957 -31.95896 -31.22017 -29.43360 -27.97835 -26.91419 -25.07230 -23.96412 -22.47372 -21.98926 -21.18288 -20.64078 -20.19064 -19.24609 -18.52472 -17.88355 -16.89070 -16.65207 -15.98887 -15.80776 -15.67034 -15.18346 -14.98262 -14.50131 -14.48771 -13.99808 -13.87451 -13.71400 -13.62531 -13.46445 -13.42005 -13.36344 -13.23622 -12.54611 -12.41210 -12.28636 -12.03608 -11.69155 -11.54882 -11.30574 -11.16355 -10.95098 -10.76220 -10.56523 -10.52343 -10.41698 -10.37752 -10.23319 -9.50299 -9.43122 -8.85157 -8.37104 -8.02242 -7.90073 -6.43376 -3.84238 0.68688 1.93160 2.21452 2.87861 2.90237 3.16790 3.25609 3.31101 3.88021 4.07677 4.14927 4.29416 4.44529 4.51158 4.53870 4.62151 4.79205 4.84032 4.90948 5.07841 5.12844 5.23351 5.25684 5.27731 5.39797 5.43732 5.49385 5.54816 5.61600 5.64900 5.77900 5.86543 5.89521 5.97151 5.98723 6.02769 6.12246 6.25875 6.32697 6.46823 6.68584 7.15459 7.23989 7.30375 7.53795 7.78321 8.04386 8.59895 9.16267 9.52065 10.03765 10.74276 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.001716 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.201619 B =16314.639141 C =16900.921210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.225 4.225 4 C -0.116 4.116 5 C -0.082 4.082 6 C 0.602 3.398 7 O -0.520 6.520 8 N -0.716 5.716 9 C 0.129 3.871 10 C -0.111 4.111 11 H 0.080 0.920 12 C -0.123 4.123 13 C 0.038 3.962 14 N -0.495 5.495 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.042 3.958 28 O -0.163 6.163 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.035 0.965 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.047 0.953 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 24.080 9.344 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.244 4.244 4 C -0.137 4.137 5 C -0.133 4.133 6 C 0.388 3.612 7 O -0.398 6.398 8 N -0.367 5.367 9 C 0.006 3.994 10 C -0.130 4.130 11 H 0.098 0.902 12 C -0.162 4.162 13 C -0.089 4.089 14 N -0.219 5.219 15 C -0.095 4.095 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.087 4.087 28 O -0.059 6.059 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.128 24.369 8.328 28.466 hybrid contribution -0.671 -1.272 0.558 1.542 sum -12.799 23.097 8.885 27.861 Atomic orbital electron populations 1.20437 0.84470 1.04622 1.04086 1.22849 0.94332 0.84065 1.02052 1.21589 0.92340 0.99904 1.10562 1.21965 0.98675 0.92954 1.00065 1.22058 0.81854 0.94700 1.14733 1.16524 0.86024 0.81564 0.77071 1.90901 1.22041 1.76144 1.50727 1.45918 1.11083 1.05364 1.74296 1.21594 0.87328 0.87341 1.03111 1.22263 0.98081 0.93441 0.99264 0.90199 1.22701 0.99320 0.98305 0.95834 1.23479 0.87114 0.93875 1.04413 1.64622 1.22594 1.10618 1.24108 1.22101 1.01606 0.89035 0.96806 1.19715 0.85025 0.83023 0.89491 1.90435 1.48571 1.73159 1.34410 1.41855 1.54386 1.07667 1.15875 1.19704 1.38282 0.90826 0.94098 0.87878 1.25271 0.96877 0.97421 0.98364 1.69609 1.41784 1.15222 1.27607 0.85851 0.78929 0.78642 0.80819 1.20365 1.20945 1.19439 1.22885 0.97881 0.95480 0.92487 1.84007 1.15997 1.35027 1.70851 0.90123 0.89136 0.89082 0.82608 0.82179 0.76001 0.91000 0.90193 0.91468 0.90536 0.86337 0.94651 0.93355 0.89182 0.77443 0.91851 0.93520 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.41 36.01 0.37 0.10 16 2 C 0.02 0.14 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -1.66 10.77 -39.89 -0.43 -2.09 16 4 C -0.12 -1.10 10.62 -39.40 -0.42 -1.51 16 5 C -0.08 -0.86 7.13 -36.79 -0.26 -1.13 16 6 C 0.60 7.21 7.79 -12.86 -0.10 7.11 16 7 O -0.52 -7.82 16.87 5.19 0.09 -7.73 16 8 N -0.72 -7.12 5.42 -61.62 -0.33 -7.46 16 9 C 0.13 1.35 4.77 -4.04 -0.02 1.33 16 10 C -0.11 -1.16 3.03 -89.26 -0.27 -1.43 16 11 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.12 -1.49 6.41 -24.87 -0.16 -1.65 16 13 C 0.04 0.63 5.30 -1.90 -0.01 0.62 16 14 N -0.50 -8.22 5.26 -231.89 -1.22 -9.44 16 15 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 16 C 0.44 10.34 7.50 -10.98 -0.08 10.25 16 17 O -0.58 -15.27 13.08 5.55 0.07 -15.20 16 18 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.04 0.52 6.35 -2.75 -0.02 0.50 16 28 O -0.16 -1.51 10.40 5.01 0.05 -1.46 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.41 3.31 8.16 -40.82 -0.33 2.98 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.98 7.76 -51.93 -0.40 0.57 16 39 H 0.12 2.37 5.97 -51.93 -0.31 2.06 16 40 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 41 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 46 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -33.21 385.78 -8.52 -41.74 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.71 Total: 11.05 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.92 Total: 4.66 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.89 Total: -54.81 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.21 Total: -24.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -8.52 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731839708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.480 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds