Wall clock time and date at job start Sat Apr 11 2020 04:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35125 * 125.61726 * 2 1 4 4 C 1.40358 * 107.11466 * 179.78182 * 3 2 1 5 5 C 1.36543 * 106.70619 * 0.40690 * 4 3 2 6 6 C 1.46663 * 125.98669 * 179.85483 * 5 4 3 7 7 O 1.21696 * 120.00030 * 359.71405 * 6 5 4 8 8 N 1.34775 * 119.99830 * 179.71950 * 6 5 4 9 9 C 1.46502 * 119.99835 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46991 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.27298 * 307.09066 * 10 9 8 12 12 C 1.54591 * 110.30739 * 69.28447 * 10 9 8 13 13 C 1.54935 * 102.92137 * 140.87223 * 12 10 9 14 14 N 1.48540 * 103.22769 * 322.58331 * 13 12 10 15 15 C 1.46904 * 110.99947 * 159.72020 * 14 13 12 16 16 C 1.50697 * 109.46892 * 52.60416 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47025 * 89.99899 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00610 * 23 21 19 26 26 H 1.48511 * 109.46991 * 330.00512 * 23 21 19 27 27 C 1.47900 * 105.81665 * 39.21034 * 14 13 12 28 28 O 1.33928 * 125.61120 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47397 * 299.98753 * 1 2 3 31 31 H 1.09002 * 109.47081 * 59.98366 * 1 2 3 32 32 H 1.08000 * 126.44438 * 0.02768 * 3 2 1 33 33 H 1.08006 * 126.64801 * 180.30213 * 4 3 2 34 34 H 0.96999 * 120.00371 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47080 * 59.99935 * 9 8 6 36 36 H 1.08998 * 109.46964 * 299.99786 * 9 8 6 37 37 H 1.08993 * 110.72626 * 259.22928 * 12 10 9 38 38 H 1.09006 * 110.72744 * 22.51879 * 12 10 9 39 39 H 1.09005 * 110.66793 * 204.15512 * 13 12 10 40 40 H 1.08997 * 110.67329 * 81.02270 * 13 12 10 41 41 H 1.09001 * 109.46900 * 292.61076 * 15 14 13 42 42 H 1.08993 * 109.47169 * 172.60797 * 15 14 13 43 43 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 44 44 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 45 45 H 1.08991 * 109.92197 * 94.02129 * 27 14 13 46 46 H 1.09005 * 109.91623 * 215.12120 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 0.0051 5 6 3.5822 -0.7117 -0.0013 6 6 4.7414 -1.6102 -0.0022 7 8 5.8680 -1.1501 -0.0021 8 7 4.5588 -2.9456 -0.0031 9 6 5.7167 -3.8431 -0.0045 10 6 5.2360 -5.2957 -0.0047 11 1 4.5327 -5.4608 0.8114 12 6 4.5793 -5.6433 -1.3604 13 6 5.0698 -7.0895 -1.6222 14 7 6.4648 -7.0728 -1.1124 15 6 6.9381 -8.4343 -0.8290 16 6 6.7257 -9.3026 -2.0422 17 8 6.2245 -8.8348 -3.0428 18 7 7.0882 -10.6005 -2.0139 19 6 6.8899 -11.3918 -3.1156 20 1 6.4428 -10.9754 -4.0062 21 6 7.2641 -12.7297 -3.0866 22 7 7.8076 -13.2366 -2.0028 23 14 6.9933 -13.8082 -4.5875 24 1 8.1919 -13.7490 -5.4623 25 1 6.7648 -15.2102 -4.1550 26 1 5.8078 -13.3224 -5.3387 27 6 6.4341 -6.2552 0.1197 28 8 2.2869 -1.0888 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5136 0.8901 31 1 -0.3633 0.5141 -0.8899 32 1 1.9613 2.1260 0.0004 33 1 4.5113 1.2702 0.0111 34 1 3.6609 -3.3124 -0.0028 35 1 6.3192 -3.6603 0.8852 36 1 6.3181 -3.6589 -0.8947 37 1 3.4927 -5.6129 -1.2817 38 1 4.9295 -4.9698 -2.1426 39 1 5.0526 -7.3144 -2.6886 40 1 4.4658 -7.8071 -1.0669 41 1 6.3811 -8.8446 0.0134 42 1 7.9997 -8.4063 -0.5835 43 1 7.4894 -10.9746 -1.2138 44 1 8.0692 -14.1703 -1.9826 45 1 6.3053 -6.8991 0.9896 46 1 7.3601 -5.6876 0.2119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731839708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:03 Heat of formation + Delta-G solvation = -76.487953 kcal Electronic energy + Delta-G solvation = -27686.787638 eV Core-core repulsion = 23577.017137 eV Total energy + Delta-G solvation = -4109.770501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.72058 -41.00934 -40.44936 -39.17762 -36.36406 -35.82701 -34.30086 -33.47501 -33.17638 -32.74086 -30.50532 -28.92171 -28.10909 -26.45735 -25.34575 -23.23627 -22.66081 -22.40269 -21.50345 -21.06565 -21.00163 -19.87268 -19.32534 -17.90031 -17.56360 -17.36173 -16.81219 -16.68217 -16.45021 -16.24206 -16.01967 -15.71849 -15.59477 -15.13065 -14.70046 -14.54191 -14.16270 -14.14029 -14.05286 -13.97381 -13.71893 -13.57234 -13.48339 -13.24052 -12.93541 -12.86379 -12.80097 -12.42493 -12.38660 -12.19651 -12.13332 -11.88068 -11.60696 -11.49557 -11.43554 -11.06334 -10.32329 -10.15366 -10.00810 -9.47127 -9.28825 -8.47384 -5.95984 -0.03185 1.32783 1.37218 1.41131 1.53634 1.54889 2.03433 2.05914 2.12438 2.28353 2.88983 3.19589 3.34184 3.51928 3.64012 3.70759 3.83537 3.90417 3.95193 4.28150 4.32101 4.39268 4.40455 4.49930 4.50728 4.58842 4.60626 4.68590 4.71820 4.74814 4.74983 4.87611 4.92338 4.94523 5.07214 5.13735 5.18976 5.30761 5.31157 5.41179 5.44772 5.82780 5.87990 5.99487 6.14159 6.37350 6.60016 6.94600 7.12240 7.54766 8.10837 8.70017 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.001716 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.201619 B =16314.639141 C =16900.921210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.232 4.232 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.601 3.399 7 O -0.561 6.561 8 N -0.705 5.705 9 C 0.135 3.865 10 C -0.095 4.095 11 H 0.107 0.893 12 C -0.113 4.113 13 C 0.038 3.962 14 N -0.517 5.517 15 C 0.048 3.952 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.040 3.960 28 O -0.170 6.170 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.161 0.839 34 H 0.415 0.585 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.065 0.935 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 24.946 10.673 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.251 4.251 4 C -0.142 4.142 5 C -0.163 4.163 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.355 5.355 9 C 0.012 3.988 10 C -0.114 4.114 11 H 0.125 0.875 12 C -0.151 4.151 13 C -0.090 4.090 14 N -0.242 5.242 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.501 6.501 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.088 4.088 28 O -0.066 6.066 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.808 25.226 9.682 30.344 hybrid contribution -0.232 -1.443 0.140 1.468 sum -14.040 23.783 9.822 29.312 Atomic orbital electron populations 1.20673 0.81535 1.05516 1.05842 1.23698 0.95873 0.83473 0.99698 1.21919 0.91252 1.01363 1.10572 1.22231 0.99914 0.92832 0.99177 1.21815 0.82175 0.94799 1.17511 1.16713 0.85990 0.82085 0.76401 1.90867 1.23628 1.76883 1.52873 1.45808 1.11503 1.04797 1.73420 1.21476 0.87392 0.87355 1.02553 1.22163 0.97613 0.92708 0.98931 0.87522 1.22610 1.00830 0.95042 0.96581 1.23285 0.87513 0.96520 1.01654 1.64580 1.22728 1.10044 1.26826 1.21991 1.03139 0.88943 0.94275 1.20750 0.83107 0.82821 0.90756 1.90439 1.49481 1.73767 1.36386 1.41926 1.55186 1.08360 1.15492 1.19661 1.40030 0.92043 0.94511 0.90284 1.26040 0.96093 0.97995 1.01150 1.69669 1.41759 1.15790 1.28864 0.84926 0.78692 0.77231 0.77467 1.19755 1.19493 1.19759 1.22982 0.99222 0.95475 0.91116 1.83995 1.15549 1.35950 1.71127 0.89694 0.87132 0.87328 0.80012 0.82166 0.74785 0.90372 0.92059 0.89057 0.91570 0.90746 0.95084 0.91123 0.87427 0.77027 0.91302 0.91723 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 71.24 0.74 0.45 16 2 C 0.03 0.31 7.31 24.97 0.18 0.49 16 3 C -0.23 -2.99 10.77 22.07 0.24 -2.75 16 4 C -0.12 -2.23 10.62 22.39 0.24 -1.99 16 5 C -0.11 -2.32 7.13 24.08 0.17 -2.15 16 6 C 0.60 14.38 7.79 86.44 0.67 15.05 16 7 O -0.56 -17.29 16.87 -4.34 -0.07 -17.37 16 8 N -0.70 -13.30 5.42 -467.09 -2.53 -15.83 16 9 C 0.14 2.65 4.77 86.38 0.41 3.07 16 10 C -0.09 -1.76 3.03 -9.91 -0.03 -1.79 16 11 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 12 C -0.11 -2.60 6.41 31.80 0.20 -2.39 16 13 C 0.04 1.25 5.30 86.65 0.46 1.71 16 14 N -0.52 -16.82 5.26 -887.56 -4.67 -21.49 16 15 C 0.05 1.68 5.52 85.56 0.47 2.15 16 16 C 0.44 20.96 7.50 87.65 0.66 21.61 16 17 O -0.61 -33.67 13.08 -3.06 -0.04 -33.71 16 18 N -0.57 -29.54 5.29 -306.97 -1.62 -31.16 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 23 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 C 0.04 0.90 6.35 86.45 0.55 1.45 16 28 O -0.17 -2.94 10.40 -4.99 -0.05 -2.99 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.42 6.06 8.16 -92.71 -0.76 5.30 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.46 8.00 -2.39 -0.02 1.44 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.68 7.76 -2.38 -0.02 1.66 16 39 H 0.07 3.13 5.97 -2.38 -0.01 3.12 16 40 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 41 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 44 H 0.28 14.04 8.31 -92.72 -0.77 13.27 16 45 H 0.06 1.27 7.57 -2.39 -0.02 1.25 16 46 H 0.09 1.90 7.69 -2.38 -0.02 1.89 16 Total: -1.00 -74.95 385.78 -0.90 -75.86 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.47 Total: 34.52 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.25 Total: 16.53 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -8.54 Total: -117.94 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.17 Total: -54.06 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.95 -0.90 -75.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731839708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.633 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds