Wall clock time and date at job start Sat Apr 11 2020 04:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41384 * 126.80249 * 2 1 4 4 C 1.35446 * 103.98438 * 180.15819 * 3 2 1 5 5 C 1.50702 * 126.77404 * 179.90081 * 4 3 2 6 6 C 1.50690 * 115.55329 * 329.10490 * 5 4 3 7 7 O 1.21288 * 120.00031 * 123.21609 * 6 5 4 8 8 N 1.34774 * 120.00272 * 303.21965 * 6 5 4 9 9 C 1.46503 * 120.00134 * 174.57763 * 8 6 5 10 10 C 1.53000 * 109.47228 * 179.97438 * 9 8 6 11 11 O 1.42902 * 110.88563 * 303.88097 * 10 9 8 12 12 C 1.55149 * 111.00781 * 179.97438 * 10 9 8 13 13 C 1.54327 * 102.94573 * 206.38434 * 12 10 9 14 14 N 1.47024 * 107.26819 * 22.19314 * 13 12 10 15 15 C 1.36938 * 125.64782 * 181.01837 * 14 13 12 16 16 H 1.07992 * 120.00246 * 185.61392 * 15 14 13 17 17 C 1.38816 * 119.99938 * 5.61864 * 15 14 13 18 18 N 1.31619 * 119.99642 * 6.65464 * 17 15 14 19 19 Si 1.86800 * 120.00071 * 186.65711 * 17 15 14 20 20 H 1.48499 * 109.46870 * 84.98911 * 19 17 15 21 21 H 1.48491 * 109.46979 * 204.99036 * 19 17 15 22 22 H 1.48498 * 109.47011 * 324.99259 * 19 17 15 23 23 C 1.47422 * 108.70429 * 1.28664 * 14 13 12 24 24 C 1.53001 * 117.49505 * 114.77497 * 5 4 3 25 25 C 1.52998 * 117.49552 * 183.43233 * 5 4 3 26 26 O 1.34040 * 106.44895 * 359.64915 * 4 3 2 27 27 N 1.20919 * 111.56605 * 0.23557 * 26 4 3 28 28 H 1.08998 * 109.47648 * 270.25937 * 1 2 3 29 29 H 1.08997 * 109.47331 * 30.25914 * 1 2 3 30 30 H 1.09000 * 109.47606 * 150.25803 * 1 2 3 31 31 H 1.07995 * 128.00375 * 0.06982 * 3 2 1 32 32 H 0.97003 * 119.99991 * 354.57293 * 8 6 5 33 33 H 1.08996 * 109.47262 * 60.00117 * 9 8 6 34 34 H 1.08999 * 109.47270 * 299.99380 * 9 8 6 35 35 H 0.96708 * 114.00203 * 56.11853 * 11 10 9 36 36 H 1.09005 * 110.72247 * 88.01852 * 12 10 9 37 37 H 1.09002 * 110.87558 * 324.82040 * 12 10 9 38 38 H 1.08996 * 109.88217 * 262.77512 * 13 12 10 39 39 H 1.09006 * 109.88185 * 141.60794 * 13 12 10 40 40 H 0.97001 * 119.99706 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.36801 * 94.47902 * 23 14 13 42 42 H 1.08995 * 110.36627 * 216.80708 * 23 14 13 43 43 H 1.08998 * 117.49889 * 214.99822 * 24 5 4 44 44 H 1.09005 * 117.50007 * 0.02924 * 24 5 4 45 45 H 1.09001 * 117.50541 * 359.97438 * 25 5 4 46 46 H 1.09004 * 117.50172 * 145.00177 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0036 5 6 4.9021 1.3696 -0.0073 6 6 4.8702 2.7048 -0.7052 7 8 5.1870 3.7102 -0.1055 8 7 4.4895 2.7817 -1.9958 9 6 4.3440 4.0894 -2.6399 10 6 3.9062 3.8963 -4.0932 11 8 4.8257 3.0572 -4.7950 12 6 3.7403 5.2621 -4.8103 13 6 2.7053 4.9507 -5.9119 14 7 1.9622 3.7553 -5.4872 15 6 0.9654 3.1411 -6.1974 16 1 0.4172 2.3202 -5.7593 17 6 0.6597 3.5735 -7.4805 18 7 1.4103 4.4834 -8.0646 19 14 -0.8170 2.8642 -8.3782 20 1 -2.0393 3.6119 -7.9881 21 1 -0.6099 2.9842 -9.8437 22 1 -0.9757 1.4328 -8.0161 23 6 2.4633 3.3313 -4.1672 24 6 5.8027 1.2365 1.2224 25 6 6.1967 0.5587 -0.0924 26 8 3.4537 -0.7253 0.0024 27 7 2.2868 -1.0423 0.0044 28 1 -0.3634 0.0047 1.0276 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3634 -0.8923 -0.5098 31 1 2.0709 2.1743 0.0010 32 1 4.3120 1.9711 -2.4983 33 1 5.2986 4.6149 -2.6152 34 1 3.5932 4.6745 -2.1087 35 1 4.9614 2.1923 -4.3841 36 1 4.6847 5.5848 -5.2486 37 1 3.3575 6.0173 -4.1238 38 1 3.2153 4.7546 -6.8549 39 1 2.0210 5.7915 -6.0259 40 1 1.1969 4.7853 -8.9614 41 1 1.8469 3.7538 -3.3737 42 1 2.4784 2.2436 -4.0987 43 1 6.3722 2.1147 1.5265 44 1 5.4554 0.5969 2.0338 45 1 6.1085 -0.5264 -0.1452 46 1 7.0255 0.9910 -0.6531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716925310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:37 Heat of formation + Delta-G solvation = 35.865693 kcal Electronic energy + Delta-G solvation = -29811.720278 eV Core-core repulsion = 25706.821797 eV Total energy + Delta-G solvation = -4104.898481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.16636 -40.47164 -38.73963 -36.99266 -35.21831 -34.99278 -34.22010 -32.16962 -31.73392 -29.72933 -28.89782 -28.42314 -26.12634 -24.86554 -23.59261 -23.32627 -22.76245 -21.39605 -20.29668 -20.11018 -19.58009 -18.40533 -17.80049 -17.08415 -16.95199 -16.39213 -15.90484 -15.49687 -15.16409 -14.73250 -14.62095 -14.19337 -13.99848 -13.78071 -13.55868 -13.51569 -13.35676 -13.20128 -12.97152 -12.67712 -12.41164 -12.02366 -11.97200 -11.73851 -11.67100 -11.42627 -11.19043 -11.08720 -10.88513 -10.78686 -10.42075 -10.27661 -10.19368 -10.12253 -9.96138 -9.79379 -9.50286 -9.44273 -9.22623 -8.63479 -6.85094 -5.72041 -3.08759 1.13193 1.98652 2.03460 2.68971 2.96387 3.33102 3.38227 3.42924 3.45063 3.89254 3.98509 4.24307 4.34763 4.43921 4.45044 4.50614 4.75528 4.82544 4.99586 5.07773 5.18362 5.23248 5.26571 5.28926 5.33219 5.44261 5.46917 5.55096 5.58684 5.60438 5.67284 5.73467 5.88093 5.91880 6.11700 6.15746 6.33477 6.39320 6.49925 6.54777 7.19599 7.42830 7.62940 7.82703 7.87433 7.95538 8.03444 8.24647 9.17660 9.78559 10.43539 11.37218 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003590 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.464821 B = 7797.475047 C = 9511.974318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.024 3.976 3 C -0.211 4.211 4 C 0.004 3.996 5 C -0.095 4.095 6 C 0.562 3.438 7 O -0.525 6.525 8 N -0.716 5.716 9 C 0.103 3.897 10 C 0.102 3.898 11 O -0.534 6.534 12 C -0.127 4.127 13 C 0.175 3.825 14 N -0.596 5.596 15 C -0.232 4.232 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.917 5.917 19 Si 0.911 3.089 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.119 3.881 24 C -0.124 4.124 25 C -0.143 4.143 26 O 0.103 5.897 27 N -0.363 5.363 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.171 0.829 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.361 0.639 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.037 0.963 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -6.521 18.449 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C -0.233 4.233 4 C -0.060 4.060 5 C -0.100 4.100 6 C 0.346 3.654 7 O -0.401 6.401 8 N -0.367 5.367 9 C -0.021 4.021 10 C 0.060 3.940 11 O -0.337 6.337 12 C -0.165 4.165 13 C 0.051 3.949 14 N -0.322 5.322 15 C -0.360 4.360 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.742 3.258 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.208 1.208 23 C -0.009 4.009 24 C -0.162 4.162 25 C -0.180 4.180 26 O 0.036 5.964 27 N -0.067 5.067 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.188 0.812 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.207 0.793 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.254 -6.545 18.226 20.680 hybrid contribution -1.173 -0.361 -0.450 1.307 sum 6.081 -6.906 17.777 20.017 Atomic orbital electron populations 1.20214 0.85645 1.04377 1.03368 1.23597 0.99216 0.88449 1.02146 1.22380 0.90809 1.01377 1.08684 1.22788 0.95327 0.83834 1.04054 1.19419 0.88013 0.95037 1.07540 1.18831 0.76987 0.87921 0.81642 1.90738 1.47657 1.35938 1.65770 1.45894 1.68928 1.10259 1.11630 1.22128 1.02555 0.84174 0.93245 1.22766 0.89817 0.93598 0.87844 1.86678 1.64275 1.28970 1.53808 1.22880 1.01434 0.92823 0.99412 1.21218 0.90767 0.88780 0.94150 1.44329 1.41415 1.30165 1.16288 1.18991 1.08090 1.13259 0.95699 0.90630 1.24808 0.99316 0.99411 0.96645 1.69952 1.38635 1.33442 1.14316 0.86151 0.82298 0.78420 0.78957 1.21537 1.21632 1.20755 1.22172 0.91236 0.97124 0.90328 1.23196 0.98749 1.03446 0.90777 1.23249 0.94075 1.00079 1.00631 1.84798 1.21876 1.21880 1.67802 1.73862 0.89050 1.23759 1.20052 0.90140 0.89534 0.90331 0.81168 0.76447 0.90418 0.90199 0.79264 0.90859 0.90971 0.91511 0.95120 0.93690 0.95680 0.94488 0.86295 0.87283 0.86615 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 36.00 0.38 -0.33 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 C -0.21 -2.35 10.61 -39.38 -0.42 -2.77 16 4 C 0.00 0.04 6.74 -35.30 -0.24 -0.20 16 5 C -0.10 -0.90 2.44 -156.82 -0.38 -1.28 16 6 C 0.56 6.62 6.77 -10.99 -0.07 6.55 16 7 O -0.53 -7.80 16.51 5.55 0.09 -7.71 16 8 N -0.72 -8.13 5.17 -60.30 -0.31 -8.44 16 9 C 0.10 1.36 4.89 -4.04 -0.02 1.34 16 10 C 0.10 1.67 0.97 -88.35 -0.09 1.59 16 11 O -0.53 -9.04 13.21 -35.23 -0.47 -9.51 16 12 C -0.13 -2.31 6.15 -24.90 -0.15 -2.46 16 13 C 0.18 4.22 5.44 -3.06 -0.02 4.21 16 14 N -0.60 -14.93 3.39 -169.93 -0.58 -15.50 16 15 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 16 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 17 C 0.00 -0.14 5.45 -17.43 -0.10 -0.23 16 18 N -0.92 -26.88 10.44 55.49 0.58 -26.30 16 19 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.12 2.30 6.22 -2.41 -0.01 2.28 16 24 C -0.12 -0.94 9.75 -26.69 -0.26 -1.20 16 25 C -0.14 -0.99 9.89 -26.69 -0.26 -1.26 16 26 O 0.10 1.19 10.96 17.18 0.19 1.38 16 27 N -0.36 -4.65 12.07 33.42 0.40 -4.24 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.40 4.13 7.29 -40.82 -0.30 3.83 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.36 4.65 7.69 45.56 0.35 5.00 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 38 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 39 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.48 7.99 -51.93 -0.42 0.07 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.12 0.93 7.85 -51.93 -0.41 0.53 16 44 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.12 0.69 8.00 -51.93 -0.42 0.27 16 46 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -33.92 385.15 -7.86 -41.78 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.14 Total: 6.42 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.09 Total: -54.49 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.19 Total: -15.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.92 -7.86 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716925310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.642 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds