Wall clock time and date at job start Sat Apr 11 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47025 * 2 1 4 4 C 1.38358 * 120.26556 * 270.01723 * 3 2 1 5 5 N 1.31883 * 121.18165 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.79994 * 359.66344 * 5 4 3 7 7 O 1.35432 * 119.79917 * 180.31349 * 6 5 4 8 8 C 1.40280 * 120.40061 * 0.62030 * 6 5 4 9 9 C 1.47525 * 120.59892 * 179.68069 * 8 6 5 10 10 O 1.21590 * 119.99646 * 21.24148 * 9 8 6 11 11 N 1.34769 * 120.00375 * 201.23606 * 9 8 6 12 12 C 1.46506 * 119.99729 * 5.47483 * 11 9 8 13 13 C 1.46497 * 120.00308 * 185.75431 * 11 9 8 14 14 H 1.09001 * 110.88458 * 357.29894 * 13 11 9 15 15 C 1.54910 * 111.00586 * 121.17611 * 13 11 9 16 16 N 1.47425 * 104.83145 * 155.08529 * 15 13 11 17 17 C 1.36938 * 125.65207 * 155.90719 * 16 15 13 18 18 H 1.08001 * 119.99543 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00374 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00233 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47521 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47049 * 120.00223 * 21 19 17 24 24 H 1.48504 * 109.47181 * 239.99596 * 21 19 17 25 25 C 1.47029 * 108.70529 * 335.87224 * 16 15 13 26 26 C 1.54324 * 107.26797 * 1.05869 * 25 16 15 27 27 H 1.08995 * 110.72302 * 263.82999 * 26 25 16 28 28 O 1.42901 * 110.72049 * 140.55420 * 26 25 16 29 29 C 1.38331 * 120.27389 * 90.00070 * 3 2 1 30 30 H 1.08999 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47538 * 300.00099 * 1 2 3 32 32 H 1.09002 * 109.47385 * 60.00122 * 1 2 3 33 33 H 1.08997 * 109.47003 * 239.99445 * 2 1 3 34 34 H 1.08998 * 109.46915 * 119.99782 * 2 1 3 35 35 H 1.08000 * 119.41137 * 359.97438 * 4 3 2 36 36 H 0.96696 * 113.99668 * 270.30338 * 7 6 5 37 37 H 1.08996 * 109.47379 * 264.27198 * 12 11 9 38 38 H 1.08997 * 109.47060 * 24.27603 * 12 11 9 39 39 H 1.09001 * 109.46555 * 144.27197 * 12 11 9 40 40 H 1.09002 * 110.37000 * 273.92373 * 15 13 11 41 41 H 1.08999 * 110.36830 * 36.13944 * 15 13 11 42 42 H 0.97000 * 120.00615 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.87980 * 120.47156 * 25 16 15 44 44 H 1.08991 * 109.88059 * 241.48945 * 25 16 15 45 45 H 0.96701 * 113.99947 * 66.47444 * 28 26 25 46 46 H 1.08001 * 120.82627 * 0.04004 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0784 -1.1950 5 7 2.7035 3.3218 -1.2161 6 6 2.9353 3.9979 -0.1035 7 8 3.3798 5.2754 -0.1725 8 6 2.7297 3.3979 1.1477 9 6 2.9936 4.1458 2.3916 10 8 3.0130 5.3614 2.3775 11 7 3.2130 3.4816 3.5436 12 6 3.3088 2.0197 3.5394 13 6 3.3497 4.2211 4.8009 14 1 3.2968 5.2959 4.6273 15 6 2.2813 3.7714 5.8285 16 7 2.8680 4.0843 7.1443 17 6 2.1659 4.3049 8.2991 18 1 1.0871 4.2553 8.2930 19 6 2.8409 4.5912 9.4777 20 7 4.1557 4.6512 9.4853 21 14 1.8831 4.8914 11.0532 22 1 0.4289 4.7668 10.7799 23 1 2.2821 3.8891 12.0737 24 1 2.1771 6.2564 11.5588 25 6 4.3318 4.1194 7.0115 26 6 4.6644 3.8387 5.5309 27 1 4.8961 2.7843 5.3808 28 8 5.7453 4.6631 5.0904 29 6 2.2648 2.0783 1.1947 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0828 1.5643 -2.1272 36 1 4.3432 5.3558 -0.1947 37 1 2.3393 1.5914 3.7936 38 1 3.6085 1.6781 2.5488 39 1 4.0499 1.7022 4.2729 40 1 1.3564 4.3297 5.6831 41 1 2.0955 2.7011 5.7389 42 1 4.6274 4.8517 10.3089 43 1 4.7063 5.1029 7.2955 44 1 4.7800 3.3548 7.6458 45 1 6.5904 4.4646 5.5165 46 1 2.0914 1.5860 2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047581323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:06 Heat of formation + Delta-G solvation = -29.070918 kcal Electronic energy + Delta-G solvation = -29785.943895 eV Core-core repulsion = 25678.229552 eV Total energy + Delta-G solvation = -4107.714344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.25683 -39.52213 -37.88745 -37.45049 -35.34116 -34.94053 -34.53395 -32.82439 -31.60817 -29.42827 -28.58916 -27.62752 -26.96463 -25.03231 -24.27230 -24.10449 -22.41849 -20.58415 -20.43702 -19.43447 -18.67592 -17.73876 -17.18933 -16.97300 -16.66304 -16.27860 -15.83832 -15.26511 -14.90758 -14.75969 -14.33236 -14.26080 -14.05431 -14.00427 -13.60106 -13.37631 -13.10604 -12.99982 -12.71108 -12.38914 -12.31078 -12.22995 -12.06783 -11.72710 -11.65446 -11.50234 -11.40256 -11.27256 -10.90361 -10.84226 -10.20040 -10.09523 -10.02656 -9.96085 -9.87153 -9.46742 -9.29451 -9.04805 -8.76188 -8.41848 -6.96499 -5.80526 -3.15945 0.39119 0.79880 2.77547 2.92275 3.31846 3.35882 3.41811 3.44045 3.56320 4.16890 4.29949 4.41041 4.44503 4.50053 4.60754 4.72786 4.91896 4.96300 4.98038 5.12327 5.14638 5.25934 5.31856 5.40192 5.44276 5.45706 5.51122 5.57158 5.59289 5.68368 5.82553 5.83264 5.87379 5.98972 6.05737 6.14221 6.42927 6.53182 6.79675 7.29681 7.32766 7.42581 7.47089 7.60735 7.69707 8.12133 8.14650 8.25109 9.09994 9.70146 10.32712 11.30880 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.002957 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.176233 B = 9466.738804 C =10295.872197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.158 4.158 4 C 0.145 3.855 5 N -0.506 5.506 6 C 0.362 3.638 7 O -0.459 6.459 8 C -0.192 4.192 9 C 0.559 3.441 10 O -0.510 6.510 11 N -0.595 5.595 12 C 0.058 3.942 13 C 0.135 3.865 14 H 0.117 0.883 15 C 0.132 3.868 16 N -0.599 5.599 17 C -0.231 4.231 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.153 3.847 26 C 0.065 3.935 27 H 0.057 0.943 28 O -0.560 6.560 29 C -0.048 4.048 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.162 0.838 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.374 0.626 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -12.618 -19.538 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.160 4.160 4 C -0.013 4.013 5 N -0.224 5.224 6 C 0.182 3.818 7 O -0.266 6.266 8 C -0.199 4.199 9 C 0.346 3.654 10 O -0.385 6.385 11 N -0.327 5.327 12 C -0.085 4.085 13 C 0.031 3.969 14 H 0.135 0.865 15 C 0.005 3.995 16 N -0.326 5.326 17 C -0.359 4.359 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.027 3.973 26 C 0.004 3.996 27 H 0.075 0.925 28 O -0.365 6.365 29 C -0.074 4.074 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.179 0.821 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.220 0.780 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.402 -10.998 -20.440 23.253 hybrid contribution 0.377 -0.637 2.032 2.163 sum -1.025 -11.636 -18.408 21.801 Atomic orbital electron populations 1.21791 0.94338 1.02125 1.02523 1.20456 0.96400 0.91094 1.03552 1.20899 1.02635 0.98762 0.93672 1.22627 0.92005 0.88771 0.97853 1.67330 1.15003 1.08738 1.31369 1.19178 0.92080 0.84245 0.86302 1.84783 1.27677 1.18831 1.95320 1.21152 1.08356 0.95537 0.94864 1.17853 0.77756 0.87224 0.82539 1.90850 1.49811 1.12809 1.85030 1.47583 1.71065 1.06806 1.07288 1.22462 1.02111 0.80699 1.03205 1.22445 0.94682 0.98461 0.81318 0.86516 1.21764 0.94748 0.97495 0.85519 1.44242 1.01476 1.83308 1.03594 1.19118 0.90501 1.41496 0.84765 0.90067 1.24823 0.95829 1.01569 0.98022 1.69938 1.05531 1.54998 1.26428 0.85995 0.78828 0.77557 0.83067 1.20404 1.21692 1.21614 1.21843 0.85107 1.01983 0.88362 1.23555 0.86581 0.92557 0.96867 0.92548 1.86505 1.19964 1.62071 1.67919 1.22577 0.92290 0.92319 1.00164 0.91965 0.92318 0.92453 0.90412 0.90424 0.82098 0.73844 0.91659 0.90016 0.90481 0.93320 0.95767 0.93645 0.92106 0.93343 0.77967 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.39 6.08 -27.88 -0.17 -0.56 16 3 C -0.16 -1.26 5.14 -104.54 -0.54 -1.80 16 4 C 0.15 1.30 10.84 -17.49 -0.19 1.11 16 5 N -0.51 -6.21 10.37 -12.98 -0.13 -6.35 16 6 C 0.36 4.95 7.75 -16.61 -0.13 4.82 16 7 O -0.46 -6.54 11.88 -38.55 -0.46 -7.00 16 8 C -0.19 -2.55 5.59 -104.69 -0.58 -3.13 16 9 C 0.56 9.23 7.48 -12.48 -0.09 9.13 16 10 O -0.51 -10.46 14.89 -15.27 -0.23 -10.68 16 11 N -0.59 -9.13 2.91 -172.71 -0.50 -9.63 16 12 C 0.06 0.62 7.69 59.85 0.46 1.08 16 13 C 0.13 2.56 3.18 -65.78 -0.21 2.35 16 14 H 0.12 2.61 7.02 -51.93 -0.36 2.24 16 15 C 0.13 2.70 6.83 -2.53 -0.02 2.68 16 16 N -0.60 -14.97 3.39 -170.07 -0.58 -15.54 16 17 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.41 10.31 55.49 0.57 -25.84 16 21 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.15 3.59 5.15 -3.06 -0.02 3.57 16 26 C 0.06 1.21 3.89 -24.89 -0.10 1.11 16 27 H 0.06 0.93 6.01 -51.93 -0.31 0.62 16 28 O -0.56 -10.20 13.39 -35.23 -0.47 -10.67 16 29 C -0.05 -0.47 7.35 -38.89 -0.29 -0.76 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.40 3.94 9.06 45.56 0.41 4.35 16 37 H 0.07 0.60 6.92 -51.93 -0.36 0.24 16 38 H 0.08 0.71 4.97 -51.93 -0.26 0.45 16 39 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.46 7.06 -51.93 -0.37 0.09 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 44 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 45 H 0.37 5.18 9.12 45.56 0.42 5.60 16 46 H 0.17 1.32 4.27 -52.49 -0.22 1.09 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -36.12 368.83 -7.65 -43.78 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.64 Total: 7.18 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -1.75 Total: 12.44 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.64 Total: -57.36 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.16 Total: -28.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.12 -7.65 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047581323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.707 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds