Wall clock time and date at job start Sat Apr 11 2020 04:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46111 * 2 1 4 4 C 1.53037 * 109.45500 * 240.03099 * 2 1 3 5 5 C 1.53121 * 109.28133 * 180.80979 * 4 2 1 6 6 H 1.09002 * 109.51863 * 297.74891 * 5 4 2 7 7 N 1.46493 * 109.52326 * 177.55666 * 5 4 2 8 8 C 1.34786 * 119.99731 * 155.31448 * 7 5 4 9 9 O 1.21688 * 120.00004 * 0.02562 * 8 7 5 10 10 C 1.46657 * 119.99855 * 179.97438 * 8 7 5 11 11 C 1.36543 * 125.98421 * 179.71766 * 10 8 7 12 12 C 1.40365 * 106.70516 * 179.85830 * 11 10 8 13 13 C 1.35136 * 107.11413 * 0.40369 * 12 11 10 14 14 O 1.33928 * 108.76572 * 359.75087 * 13 12 11 15 15 C 1.53123 * 109.16043 * 57.65065 * 5 4 2 16 16 C 1.53046 * 109.27815 * 302.35050 * 15 5 4 17 17 N 1.46846 * 109.52480 * 59.17884 * 16 15 5 18 18 C 1.46899 * 110.99957 * 174.16259 * 17 16 15 19 19 C 1.50700 * 109.46975 * 288.15994 * 18 17 16 20 20 O 1.21292 * 120.00105 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00036 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00208 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00133 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00065 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00041 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00366 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47235 * 89.99585 * 26 24 22 28 28 H 1.48499 * 109.47338 * 209.99941 * 26 24 22 29 29 H 1.48507 * 109.46861 * 330.00142 * 26 24 22 30 30 H 1.08997 * 109.47423 * 307.41610 * 1 2 3 31 31 H 1.09000 * 109.47483 * 67.42018 * 1 2 3 32 32 H 1.09004 * 109.46915 * 187.41671 * 1 2 3 33 33 H 1.08999 * 109.50329 * 300.74926 * 4 2 1 34 34 H 1.08996 * 109.50317 * 60.86744 * 4 2 1 35 35 H 0.96992 * 120.00311 * 335.31488 * 7 5 4 36 36 H 1.07998 * 126.65064 * 359.96025 * 11 10 8 37 37 H 1.07998 * 126.44672 * 180.15862 * 12 11 10 38 38 H 1.08001 * 125.61495 * 179.78370 * 13 12 11 39 39 H 1.09001 * 109.50179 * 182.41052 * 15 5 4 40 40 H 1.08994 * 109.53551 * 62.30904 * 15 5 4 41 41 H 1.08997 * 109.45746 * 299.16033 * 16 15 5 42 42 H 1.08999 * 109.45767 * 179.19691 * 16 15 5 43 43 H 1.09002 * 109.47183 * 48.15710 * 18 17 16 44 44 H 1.09002 * 109.47001 * 168.15848 * 18 17 16 45 45 H 0.97003 * 120.00126 * 359.97438 * 21 19 18 46 46 H 0.96999 * 120.00664 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5708 -0.7362 -1.2359 6 1 3.9456 0.2868 -1.2674 7 7 4.0637 -1.4758 -2.4004 8 6 5.2957 -1.2247 -2.8860 9 8 5.9986 -0.3840 -2.3569 10 6 5.7895 -1.9654 -4.0515 11 6 7.0088 -1.8070 -4.6451 12 6 7.0580 -2.7149 -5.7145 13 6 5.8779 -3.3730 -5.7320 14 8 5.1162 -2.9185 -4.7285 15 6 4.0546 -1.4191 0.0464 16 6 3.4864 -0.6780 1.2589 17 7 2.0193 -0.6919 1.1993 18 6 1.4375 -0.1107 2.4166 19 6 1.6332 -1.0606 3.5699 20 8 2.2011 -2.1180 3.3950 21 7 1.1764 -0.7358 4.7955 22 6 1.3541 -1.6002 5.8447 23 1 1.8597 -2.5418 5.6890 24 6 0.8835 -1.2650 7.1084 25 7 1.0534 -2.0938 8.1139 26 14 0.0083 0.3631 7.3777 27 1 -1.4489 0.1846 7.1546 28 1 0.2430 0.8271 8.7687 29 1 0.5352 1.3720 6.4238 30 1 -0.3634 0.6244 0.8162 31 1 -0.3634 0.3946 -0.9489 32 1 -0.3633 -1.0191 0.1327 33 1 1.6656 -1.7446 -1.2578 34 1 1.6893 -0.1980 -2.1399 35 1 3.5036 -2.1461 -2.8219 36 1 7.7857 -1.1179 -4.3484 37 1 7.8823 -2.8577 -6.3975 38 1 5.5956 -4.1395 -6.4385 39 1 5.1438 -1.3951 0.0827 40 1 3.7128 -2.4540 0.0595 41 1 3.8405 0.3529 1.2530 42 1 3.8175 -1.1703 2.1733 43 1 1.9297 0.8363 2.6382 44 1 0.3719 0.0608 2.2638 45 1 0.7219 0.1097 4.9353 46 1 0.7246 -1.8601 8.9961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717326708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:27:30 Heat of formation + Delta-G solvation = -42.574929 kcal Electronic energy + Delta-G solvation = -28649.686096 eV Core-core repulsion = 24541.386175 eV Total energy + Delta-G solvation = -4108.299922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.03495 -40.22833 -39.10919 -37.77482 -35.33667 -33.92225 -33.45546 -32.34346 -32.04039 -31.57643 -30.08141 -27.60093 -26.82765 -24.69602 -23.63863 -22.77340 -22.14593 -21.30515 -20.56843 -19.88627 -19.28952 -18.73303 -18.23525 -16.69789 -16.68542 -16.39787 -16.06260 -15.41889 -15.33561 -14.91811 -14.80591 -14.47437 -14.17801 -13.85469 -13.64412 -13.44405 -13.37641 -13.29041 -13.12414 -13.00050 -12.47473 -12.30263 -12.04639 -12.01627 -11.79239 -11.73827 -11.21475 -11.07732 -10.95267 -10.74355 -10.64060 -10.56143 -10.45054 -10.26343 -9.94710 -9.52402 -9.35269 -9.01454 -8.54883 -8.14101 -7.92218 -6.27822 -3.78908 0.71657 1.98040 2.31564 2.89543 2.93032 3.04515 3.08563 3.16799 3.78467 3.87307 4.12912 4.29722 4.51257 4.53314 4.65411 4.80385 4.82529 4.85447 5.15769 5.24021 5.24713 5.29063 5.35850 5.38357 5.40342 5.49347 5.52603 5.60877 5.67523 5.71074 5.79530 5.90633 5.92124 5.97001 6.00455 6.03940 6.12311 6.21566 6.36289 6.42792 6.47417 7.16949 7.23205 7.35865 7.62493 7.81837 8.18452 8.64418 8.99317 9.46512 9.88612 10.85460 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002116 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.225254 B =13226.294365 C =13691.111436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.143 3.857 6 H 0.087 0.913 7 N -0.712 5.712 8 C 0.602 3.398 9 O -0.519 6.519 10 C -0.078 4.078 11 C -0.122 4.122 12 C -0.226 4.226 13 C -0.008 4.008 14 O -0.164 6.164 15 C -0.122 4.122 16 C 0.061 3.939 17 N -0.510 5.510 18 C 0.037 3.963 19 C 0.454 3.546 20 O -0.557 6.557 21 N -0.594 5.594 22 C -0.302 4.302 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.883 5.883 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.211 0.789 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.369 0.631 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 3.881 -28.207 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.058 0.942 4 C -0.154 4.154 5 C 0.039 3.961 6 H 0.105 0.895 7 N -0.362 5.362 8 C 0.388 3.612 9 O -0.396 6.396 10 C -0.130 4.130 11 C -0.142 4.142 12 C -0.245 4.245 13 C -0.077 4.077 14 O -0.059 6.059 15 C -0.161 4.161 16 C -0.067 4.067 17 N -0.235 5.235 18 C -0.094 4.094 19 C 0.240 3.760 20 O -0.438 6.438 21 N -0.234 5.234 22 C -0.431 4.431 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.523 5.523 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.203 1.203 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.227 0.773 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.202 0.798 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.507 3.143 -27.638 28.179 hybrid contribution -0.487 1.720 0.129 1.792 sum 4.019 4.863 -27.509 28.224 Atomic orbital electron populations 1.21943 0.94015 1.03226 1.01530 1.21526 0.95664 0.95178 0.90069 0.94180 1.21887 0.93324 1.02685 0.97479 1.21200 0.94123 0.96361 0.84384 0.89457 1.46000 1.16150 1.41884 1.32143 1.16558 0.81939 0.81737 0.80940 1.90898 1.56600 1.33274 1.58874 1.22161 0.94464 0.97097 0.99256 1.22008 0.96690 1.00168 0.95372 1.21887 0.99941 1.00485 1.02156 1.24434 0.90867 1.00752 0.91692 1.84064 1.42191 1.43683 1.35988 1.21940 1.00484 1.00951 0.92718 1.22105 0.86518 0.98217 0.99875 1.61539 1.07483 1.54233 1.00266 1.21993 1.01101 0.95841 0.90492 1.19680 0.84467 0.88685 0.83194 1.90547 1.44855 1.25095 1.83345 1.42220 1.53446 1.19234 1.08503 1.19416 1.35999 1.01867 0.85802 0.86314 1.25034 0.97954 0.97930 0.95354 1.69621 1.45991 1.35884 1.00851 0.86677 0.80527 0.83569 0.78630 1.19659 1.20263 1.19554 0.92192 0.92219 0.91142 0.90060 0.91006 0.76022 0.82202 0.82561 0.77293 0.91161 0.90382 0.95516 0.88255 0.93317 0.88665 0.79813 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.57 37.16 0.32 -1.22 16 2 C 0.08 0.99 2.44 -67.72 -0.17 0.82 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -1.16 4.84 -26.65 -0.13 -1.29 16 5 C 0.14 1.63 2.52 -67.81 -0.17 1.46 16 6 H 0.09 1.09 7.59 -51.93 -0.39 0.70 16 7 N -0.71 -7.35 5.08 -55.00 -0.28 -7.63 16 8 C 0.60 7.31 7.75 -12.86 -0.10 7.21 16 9 O -0.52 -7.93 16.53 5.20 0.09 -7.84 16 10 C -0.08 -0.81 7.13 -36.80 -0.26 -1.07 16 11 C -0.12 -1.13 10.62 -39.39 -0.42 -1.55 16 12 C -0.23 -1.52 10.88 -39.89 -0.43 -1.95 16 13 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 14 O -0.16 -1.41 10.40 5.02 0.05 -1.36 16 15 C -0.12 -1.69 5.67 -26.64 -0.15 -1.84 16 16 C 0.06 0.96 5.11 -3.83 -0.02 0.94 16 17 N -0.51 -7.90 4.12 -228.12 -0.94 -8.84 16 18 C 0.04 0.61 5.26 -4.98 -0.03 0.59 16 19 C 0.45 10.25 7.47 -10.99 -0.08 10.17 16 20 O -0.56 -14.77 14.42 5.55 0.08 -14.69 16 21 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 22 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 23 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 25 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 26 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 30 H 0.06 0.61 6.44 -51.93 -0.33 0.27 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.40 3.34 8.36 -40.82 -0.34 3.00 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.21 0.37 8.06 -52.49 -0.42 -0.06 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 1.91 6.35 -51.93 -0.33 1.58 16 43 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 44 H 0.10 1.37 5.55 -51.93 -0.29 1.09 16 45 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -34.87 377.16 -7.39 -42.27 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.55 Total: 12.14 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.53 Total: 4.89 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.50 Total: -55.83 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.22 Total: -23.89 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.87 -7.39 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717326708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.310 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds