Wall clock time and date at job start Sat Apr 11 2020 04:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46111 * 2 1 4 4 C 1.53037 * 109.45500 * 240.03099 * 2 1 3 5 5 C 1.53121 * 109.28133 * 180.80979 * 4 2 1 6 6 H 1.09002 * 109.51863 * 297.74891 * 5 4 2 7 7 N 1.46493 * 109.52326 * 177.55666 * 5 4 2 8 8 C 1.34786 * 119.99731 * 155.31448 * 7 5 4 9 9 O 1.21688 * 120.00004 * 0.02562 * 8 7 5 10 10 C 1.46657 * 119.99855 * 179.97438 * 8 7 5 11 11 C 1.36543 * 125.98421 * 179.71766 * 10 8 7 12 12 C 1.40365 * 106.70516 * 179.85830 * 11 10 8 13 13 C 1.35136 * 107.11413 * 0.40369 * 12 11 10 14 14 O 1.33928 * 108.76572 * 359.75087 * 13 12 11 15 15 C 1.53123 * 109.16043 * 57.65065 * 5 4 2 16 16 C 1.53046 * 109.27815 * 302.35050 * 15 5 4 17 17 N 1.46846 * 109.52480 * 59.17884 * 16 15 5 18 18 C 1.46899 * 110.99957 * 174.16259 * 17 16 15 19 19 C 1.50700 * 109.46975 * 288.15994 * 18 17 16 20 20 O 1.21292 * 120.00105 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00036 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00208 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00133 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00065 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00041 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00366 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47235 * 89.99585 * 26 24 22 28 28 H 1.48499 * 109.47338 * 209.99941 * 26 24 22 29 29 H 1.48507 * 109.46861 * 330.00142 * 26 24 22 30 30 H 1.08997 * 109.47423 * 307.41610 * 1 2 3 31 31 H 1.09000 * 109.47483 * 67.42018 * 1 2 3 32 32 H 1.09004 * 109.46915 * 187.41671 * 1 2 3 33 33 H 1.08999 * 109.50329 * 300.74926 * 4 2 1 34 34 H 1.08996 * 109.50317 * 60.86744 * 4 2 1 35 35 H 0.96992 * 120.00311 * 335.31488 * 7 5 4 36 36 H 1.07998 * 126.65064 * 359.96025 * 11 10 8 37 37 H 1.07998 * 126.44672 * 180.15862 * 12 11 10 38 38 H 1.08001 * 125.61495 * 179.78370 * 13 12 11 39 39 H 1.09001 * 109.50179 * 182.41052 * 15 5 4 40 40 H 1.08994 * 109.53551 * 62.30904 * 15 5 4 41 41 H 1.08997 * 109.45746 * 299.16033 * 16 15 5 42 42 H 1.08999 * 109.45767 * 179.19691 * 16 15 5 43 43 H 1.09002 * 109.47183 * 48.15710 * 18 17 16 44 44 H 1.09002 * 109.47001 * 168.15848 * 18 17 16 45 45 H 0.97003 * 120.00126 * 359.97438 * 21 19 18 46 46 H 0.96999 * 120.00664 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5708 -0.7362 -1.2359 6 1 3.9456 0.2868 -1.2674 7 7 4.0637 -1.4758 -2.4004 8 6 5.2957 -1.2247 -2.8860 9 8 5.9986 -0.3840 -2.3569 10 6 5.7895 -1.9654 -4.0515 11 6 7.0088 -1.8070 -4.6451 12 6 7.0580 -2.7149 -5.7145 13 6 5.8779 -3.3730 -5.7320 14 8 5.1162 -2.9185 -4.7285 15 6 4.0546 -1.4191 0.0464 16 6 3.4864 -0.6780 1.2589 17 7 2.0193 -0.6919 1.1993 18 6 1.4375 -0.1107 2.4166 19 6 1.6332 -1.0606 3.5699 20 8 2.2011 -2.1180 3.3950 21 7 1.1764 -0.7358 4.7955 22 6 1.3541 -1.6002 5.8447 23 1 1.8597 -2.5418 5.6890 24 6 0.8835 -1.2650 7.1084 25 7 1.0534 -2.0938 8.1139 26 14 0.0083 0.3631 7.3777 27 1 -1.4489 0.1846 7.1546 28 1 0.2430 0.8271 8.7687 29 1 0.5352 1.3720 6.4238 30 1 -0.3634 0.6244 0.8162 31 1 -0.3634 0.3946 -0.9489 32 1 -0.3633 -1.0191 0.1327 33 1 1.6656 -1.7446 -1.2578 34 1 1.6893 -0.1980 -2.1399 35 1 3.5036 -2.1461 -2.8219 36 1 7.7857 -1.1179 -4.3484 37 1 7.8823 -2.8577 -6.3975 38 1 5.5956 -4.1395 -6.4385 39 1 5.1438 -1.3951 0.0827 40 1 3.7128 -2.4540 0.0595 41 1 3.8405 0.3529 1.2530 42 1 3.8175 -1.1703 2.1733 43 1 1.9297 0.8363 2.6382 44 1 0.3719 0.0608 2.2638 45 1 0.7219 0.1097 4.9353 46 1 0.7246 -1.8601 8.9961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717326708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:27:29 Heat of formation + Delta-G solvation = -70.444701 kcal Electronic energy + Delta-G solvation = -28650.894620 eV Core-core repulsion = 24541.386175 eV Total energy + Delta-G solvation = -4109.508446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.64687 -41.27684 -40.43581 -39.28166 -36.43208 -35.87966 -34.08084 -33.75057 -33.35876 -33.03578 -30.82495 -28.86781 -27.94647 -26.25574 -24.76962 -23.86386 -22.74965 -22.22710 -21.48155 -21.23346 -20.78147 -20.15181 -19.50701 -17.79602 -17.42781 -17.32878 -17.20767 -16.87820 -16.61069 -16.41134 -15.81827 -15.59953 -15.49743 -15.14262 -14.86034 -14.83074 -14.51440 -14.29253 -14.05719 -13.95154 -13.74618 -13.57493 -13.43313 -13.06613 -12.93583 -12.83662 -12.70595 -12.40776 -12.16742 -11.98935 -11.88516 -11.85580 -11.66924 -11.45527 -11.25608 -11.06009 -10.41684 -10.26011 -10.20541 -9.65684 -9.18472 -8.39513 -5.99849 0.00770 1.30614 1.36337 1.41900 1.44924 1.63167 1.99864 2.06007 2.16094 2.24163 2.59291 3.15443 3.22920 3.60163 3.75016 3.79668 3.92905 3.95299 4.03738 4.11192 4.22531 4.30864 4.38922 4.41613 4.45519 4.47718 4.55370 4.61979 4.78312 4.86016 4.89679 4.94978 4.99285 5.00912 5.01593 5.12763 5.23215 5.33098 5.39686 5.44776 5.55272 5.82486 5.92426 6.04460 6.26113 6.39222 6.62570 6.91362 6.95624 7.43058 8.01398 8.78314 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002116 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.225254 B =13226.294365 C =13691.111436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.107 4.107 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.701 5.701 8 C 0.600 3.400 9 O -0.561 6.561 10 C -0.110 4.110 11 C -0.128 4.128 12 C -0.236 4.236 13 C 0.012 3.988 14 O -0.170 6.170 15 C -0.114 4.114 16 C 0.066 3.934 17 N -0.529 5.529 18 C 0.049 3.951 19 C 0.452 3.548 20 O -0.605 6.605 21 N -0.595 5.595 22 C -0.324 4.324 23 H 0.054 0.946 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.255 1.255 28 H -0.277 1.277 29 H -0.232 1.232 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.416 0.584 36 H 0.156 0.844 37 H 0.183 0.817 38 H 0.256 0.744 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.128 0.872 45 H 0.389 0.611 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 6.311 -31.444 32.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.145 4.145 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.351 5.351 8 C 0.388 3.612 9 O -0.442 6.442 10 C -0.162 4.162 11 C -0.149 4.149 12 C -0.254 4.254 13 C -0.058 4.058 14 O -0.065 6.065 15 C -0.153 4.153 16 C -0.063 4.063 17 N -0.255 5.255 18 C -0.082 4.082 19 C 0.240 3.760 20 O -0.489 6.489 21 N -0.237 5.237 22 C -0.454 4.454 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.785 3.215 27 H -0.180 1.180 28 H -0.202 1.202 29 H -0.156 1.156 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.253 0.747 36 H 0.174 0.826 37 H 0.200 0.800 38 H 0.272 0.728 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.146 0.854 45 H 0.224 0.776 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.529 5.568 -30.922 31.521 hybrid contribution 0.246 0.760 1.015 1.292 sum 2.775 6.328 -29.907 30.695 Atomic orbital electron populations 1.21944 0.92417 1.02661 1.03408 1.21712 0.96855 0.95561 0.88461 0.92791 1.21871 0.91598 1.02988 0.98059 1.21030 0.95330 0.95588 0.83297 0.90090 1.45871 1.15890 1.41818 1.31513 1.16811 0.81857 0.81323 0.81208 1.90862 1.57679 1.35236 1.60420 1.21818 0.95339 0.98972 1.00075 1.22269 0.96227 1.00376 0.95994 1.22228 1.01310 0.99978 1.01919 1.25406 0.89985 0.99943 0.90421 1.84057 1.42553 1.43314 1.36592 1.21815 0.99482 1.00210 0.93816 1.21919 0.87410 0.98424 0.98519 1.61476 1.06897 1.55788 1.01330 1.21922 1.03466 0.94501 0.88309 1.20956 0.82063 0.88846 0.84151 1.90532 1.46334 1.27708 1.84277 1.42046 1.54330 1.19400 1.07931 1.18976 1.37120 1.01088 0.88176 0.92820 1.26125 0.98293 1.03154 0.94055 1.69809 1.47332 1.38918 1.01701 0.85357 0.79369 0.77517 0.79217 1.17950 1.20183 1.15566 0.91645 0.89353 0.92593 0.90231 0.87889 0.74662 0.82607 0.79999 0.72835 0.92623 0.91859 0.94339 0.92787 0.90785 0.85443 0.77602 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.57 71.98 0.62 -1.82 16 2 C 0.08 1.68 2.44 44.94 0.11 1.79 16 3 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.88 4.84 30.65 0.15 -1.73 16 5 C 0.15 3.37 2.52 45.07 0.11 3.48 16 6 H 0.08 1.96 7.59 -2.39 -0.02 1.94 16 7 N -0.70 -14.16 5.08 -446.14 -2.27 -16.43 16 8 C 0.60 14.82 7.75 86.44 0.67 15.49 16 9 O -0.56 -17.84 16.53 -4.31 -0.07 -17.91 16 10 C -0.11 -2.26 7.13 24.07 0.17 -2.09 16 11 C -0.13 -2.32 10.62 22.39 0.24 -2.08 16 12 C -0.24 -2.63 10.88 22.07 0.24 -2.39 16 13 C 0.01 0.10 12.08 67.10 0.81 0.91 16 14 O -0.17 -2.63 10.40 -4.96 -0.05 -2.68 16 15 C -0.11 -3.29 5.67 30.65 0.17 -3.12 16 16 C 0.07 2.13 5.11 86.33 0.44 2.57 16 17 N -0.53 -15.87 4.12 -875.64 -3.61 -19.48 16 18 C 0.05 1.53 5.26 85.56 0.45 1.98 16 19 C 0.45 20.76 7.47 87.66 0.65 21.41 16 20 O -0.60 -34.00 14.42 -3.07 -0.04 -34.05 16 21 N -0.59 -28.46 5.09 -306.99 -1.56 -30.02 16 22 C -0.32 -19.27 10.16 84.04 0.85 -18.41 16 23 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 24 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 25 N -0.94 -57.26 13.96 21.66 0.30 -56.96 16 26 Si 0.97 39.25 27.74 68.60 1.90 41.16 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 28 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 30 H 0.06 1.02 6.44 -2.39 -0.02 1.01 16 31 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.42 6.42 8.36 -92.71 -0.77 5.64 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.26 -0.34 8.06 -2.91 -0.02 -0.37 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 2.23 6.35 -2.39 -0.02 2.21 16 43 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 44 H 0.13 3.21 5.55 -2.39 -0.01 3.20 16 45 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 46 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.97 377.16 0.41 -84.56 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.35 Total: 36.39 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.16 Total: 15.43 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -7.14 Total: -122.89 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -0.17 Total: -54.64 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.16 kcal Total: -84.97 0.41 -84.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717326708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -84.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds