Wall clock time and date at job start Sat Apr 11 2020 04:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00482 * 2 1 4 4 O 1.21279 * 119.99961 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47302 * 180.02562 * 5 3 2 7 7 O 1.42901 * 109.47492 * 180.02562 * 6 5 3 8 8 C 1.35969 * 117.00391 * 180.02562 * 7 6 5 9 9 C 1.38717 * 119.98876 * 180.02562 * 8 7 6 10 10 C 1.38091 * 120.01560 * 180.02562 * 9 8 7 11 11 C 1.38834 * 119.99051 * 359.97438 * 10 9 8 12 12 N 1.40150 * 120.01731 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99812 * 144.93674 * 12 11 10 14 14 O 1.21593 * 119.99963 * 4.63314 * 13 12 11 15 15 N 1.34771 * 119.99714 * 184.63685 * 13 12 11 16 16 C 1.46505 * 119.99881 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47237 * 34.99679 * 16 15 13 18 18 C 1.52998 * 109.47082 * 274.99679 * 16 15 13 19 19 C 1.50698 * 109.47072 * 154.99812 * 16 15 13 20 20 H 1.07999 * 120.00593 * 359.97438 * 19 16 15 21 21 C 1.37881 * 120.00243 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99575 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00190 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.47218 * 90.00147 * 23 21 19 25 25 H 1.48505 * 109.47070 * 209.99912 * 23 21 19 26 26 H 1.48495 * 109.47414 * 330.00165 * 23 21 19 27 27 C 1.38835 * 119.96392 * 0.27655 * 11 10 9 28 28 C 1.38090 * 119.99086 * 359.45021 * 27 11 10 29 29 H 1.09010 * 109.47005 * 59.99298 * 1 2 3 30 30 H 1.08996 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46601 * 300.00196 * 1 2 3 32 32 H 0.97008 * 119.99649 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47070 * 60.00270 * 5 3 2 34 34 H 1.09002 * 109.47227 * 300.00860 * 5 3 2 35 35 H 1.09001 * 109.46977 * 60.00042 * 6 5 3 36 36 H 1.09005 * 109.47420 * 299.99739 * 6 5 3 37 37 H 1.08002 * 119.98788 * 359.97438 * 9 8 7 38 38 H 1.08000 * 120.00649 * 179.97438 * 10 9 8 39 39 H 0.96995 * 119.99771 * 324.93637 * 12 11 10 40 40 H 0.96999 * 120.00120 * 359.97438 * 15 13 12 41 41 H 1.09001 * 109.46793 * 59.99880 * 18 16 15 42 42 H 1.09000 * 109.46929 * 180.02562 * 18 16 15 43 43 H 1.08999 * 109.47084 * 300.00094 * 18 16 15 44 44 H 0.97000 * 119.99669 * 179.97438 * 22 21 19 45 45 H 1.08008 * 120.00335 * 179.70120 * 27 11 10 46 46 H 1.07999 * 119.99629 * 180.27358 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1670 -0.0006 6 6 4.1560 2.6094 0.0002 7 8 5.5850 2.6094 -0.0010 8 6 6.2024 3.8209 0.0001 9 6 7.5877 3.8931 -0.0015 10 6 8.2153 5.1231 0.0001 11 6 7.4596 6.2878 0.0027 12 7 8.0960 7.5365 0.0038 13 6 7.5499 8.5717 -0.6646 14 8 6.4643 8.4463 -1.1978 15 7 8.2072 9.7457 -0.7420 16 6 7.6139 10.8708 -1.4690 17 1 6.5317 10.8568 -1.3397 18 6 7.9513 10.7516 -2.9565 19 6 8.1675 12.1648 -0.9304 20 1 8.8887 12.1507 -0.1267 21 6 7.7532 13.3669 -1.4637 22 7 6.8752 13.3842 -2.4428 23 14 8.4388 14.9709 -0.7956 24 1 9.6616 15.3402 -1.5531 25 1 7.4223 16.0434 -0.9433 26 1 8.7777 14.8044 0.6405 27 6 6.0732 6.2148 0.0095 28 6 5.4467 4.9842 0.0023 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 4.0089 0.6534 -0.8909 34 1 4.0096 0.6529 0.8891 35 1 3.7931 3.1227 0.8907 36 1 3.7924 3.1240 -0.8894 37 1 8.1755 2.9870 -0.0031 38 1 9.2939 5.1792 -0.0007 39 1 8.9294 7.6557 0.4855 40 1 9.0730 9.8458 -0.3164 41 1 7.5509 9.8156 -3.3460 42 1 7.5103 11.5890 -3.4973 43 1 9.0335 10.7656 -3.0858 44 1 6.5835 14.2299 -2.8177 45 1 5.4847 7.1204 0.0165 46 1 4.3683 4.9273 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159816607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:48 Heat of formation + Delta-G solvation = -77.540084 kcal Electronic energy + Delta-G solvation = -27387.395687 eV Core-core repulsion = 23277.579562 eV Total energy + Delta-G solvation = -4109.816124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49817 -40.07504 -39.29993 -37.37736 -35.10484 -34.93022 -33.94240 -32.53122 -32.17800 -30.86876 -29.29667 -27.94085 -27.22369 -25.23721 -24.38044 -22.97834 -21.97442 -20.95286 -20.80910 -19.78616 -18.55505 -18.15461 -17.43465 -17.03368 -16.70956 -16.46603 -15.96538 -15.56970 -15.43410 -14.99638 -14.54061 -14.39304 -14.13147 -13.94424 -13.83495 -13.53489 -13.44024 -13.02638 -12.88848 -12.77558 -12.53680 -12.34353 -12.19657 -11.91007 -11.70668 -11.13486 -11.09619 -10.94424 -10.79372 -10.70128 -10.40612 -10.31254 -10.22212 -9.66609 -9.62790 -9.32573 -9.02821 -8.84740 -8.55750 -7.98884 -7.44055 -6.11576 -4.20808 1.43591 1.56486 2.16108 2.47196 3.21729 3.25094 3.31856 3.33234 3.36992 3.70461 4.07810 4.22260 4.33301 4.56681 4.57019 4.79445 4.92599 4.97532 5.02646 5.03037 5.09615 5.21047 5.25507 5.33565 5.37127 5.44133 5.57485 5.70627 5.85754 6.03399 6.12813 6.51883 6.54294 6.65567 6.83080 6.91454 7.00365 7.08745 7.15164 7.27700 7.45101 7.48892 7.63473 7.71463 7.85545 8.02327 8.16803 8.74704 8.87372 9.27175 9.47930 10.94454 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.001785 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.370005 B =15683.111902 C =16675.736911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.736 5.736 3 C 0.516 3.484 4 O -0.534 6.534 5 C -0.139 4.139 6 C 0.074 3.926 7 O -0.321 6.321 8 C 0.102 3.898 9 C -0.133 4.133 10 C -0.117 4.117 11 C 0.145 3.855 12 N -0.696 5.696 13 C 0.693 3.307 14 O -0.584 6.584 15 N -0.719 5.719 16 C 0.280 3.720 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.903 3.097 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.080 4.080 28 C -0.185 4.185 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.404 0.596 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.402 0.598 40 H 0.386 0.614 41 H 0.015 0.985 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.147 0.853 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -28.764 6.711 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.388 5.388 3 C 0.302 3.698 4 O -0.410 6.410 5 C -0.179 4.179 6 C -0.002 4.002 7 O -0.236 6.236 8 C 0.056 3.944 9 C -0.152 4.152 10 C -0.138 4.138 11 C 0.049 3.951 12 N -0.345 5.345 13 C 0.393 3.607 14 O -0.462 6.462 15 N -0.370 5.370 16 C 0.178 3.822 17 H 0.067 0.933 18 C -0.207 4.207 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.101 4.101 28 C -0.204 4.204 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.236 0.764 40 H 0.218 0.782 41 H 0.034 0.966 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.164 0.836 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.987 -28.015 6.042 29.090 hybrid contribution 1.216 0.686 0.659 1.543 sum -3.771 -27.329 6.701 28.390 Atomic orbital electron populations 1.21568 0.79253 1.02353 1.02621 1.45762 1.07997 1.08667 1.76423 1.20421 0.89729 0.83799 0.75804 1.90774 1.70508 1.31136 1.48561 1.21449 0.91741 0.98664 1.06056 1.22338 0.78699 0.95908 1.03232 1.85906 1.20497 1.27598 1.89594 1.18831 0.92097 0.83624 0.99811 1.20053 0.91069 0.97751 1.06337 1.20655 0.99545 0.90423 1.03210 1.17484 0.91717 0.84169 1.01720 1.42795 1.27834 1.08649 1.55191 1.16170 0.84521 0.80583 0.79437 1.90868 1.20790 1.82368 1.52124 1.45853 1.22598 1.11286 1.57296 1.18685 0.95021 0.80705 0.87796 0.93255 1.22103 0.98796 1.00266 0.99501 1.21207 1.26397 0.90213 1.19407 0.92080 1.24886 0.94826 0.99197 0.94817 1.69909 1.30651 1.26590 1.24848 0.86428 0.78637 0.82663 0.79231 1.20565 1.21064 1.19887 1.21262 0.93493 0.98341 0.96979 1.21210 1.00185 0.91814 1.07231 0.92030 0.90520 0.92053 0.76267 0.87591 0.87634 0.91134 0.91055 0.85233 0.85255 0.76388 0.78192 0.96567 0.89103 0.95540 0.92551 0.83558 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 10.70 59.85 0.64 1.04 16 2 N -0.74 -3.70 5.71 -67.08 -0.38 -4.08 16 3 C 0.52 4.29 7.83 -10.99 -0.09 4.20 16 4 O -0.53 -6.91 15.98 5.56 0.09 -6.82 16 5 C -0.14 -0.90 6.07 -27.89 -0.17 -1.07 16 6 C 0.07 0.74 4.03 37.15 0.15 0.89 16 7 O -0.32 -3.72 10.14 -19.64 -0.20 -3.92 16 8 C 0.10 1.34 6.69 -39.23 -0.26 1.08 16 9 C -0.13 -1.61 9.98 -39.46 -0.39 -2.00 16 10 C -0.12 -1.47 9.96 -39.41 -0.39 -1.86 16 11 C 0.14 2.25 6.30 -83.61 -0.53 1.73 16 12 N -0.70 -10.96 5.35 -14.19 -0.08 -11.03 16 13 C 0.69 14.30 8.37 -86.92 -0.73 13.57 16 14 O -0.58 -14.34 13.45 5.28 0.07 -14.27 16 15 N -0.72 -15.09 5.07 -59.81 -0.30 -15.40 16 16 C 0.28 7.19 2.56 -69.08 -0.18 7.02 16 17 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 18 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 19 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.98 11.32 55.43 0.63 -24.36 16 23 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.08 -1.35 8.69 -39.41 -0.34 -1.69 16 28 C -0.19 -2.70 9.03 -39.46 -0.36 -3.05 16 29 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 0.68 8.83 -40.82 -0.36 0.32 16 33 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.74 7.62 -51.93 -0.40 0.35 16 36 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.40 4.82 8.84 -40.82 -0.36 4.46 16 40 H 0.39 6.87 8.56 -40.82 -0.35 6.52 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.15 2.82 6.24 -52.48 -0.33 2.49 16 46 H 0.13 1.74 6.29 -52.49 -0.33 1.41 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -35.29 388.17 -8.61 -43.90 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.57 Total: 10.80 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.69 Total: 3.67 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.14 Total: -54.87 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.29 -8.61 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159816607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.636 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds