Wall clock time and date at job start Sat Apr 11 2020 04:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47395 * 2 1 4 4 O 1.45195 * 109.47264 * 120.00773 * 2 1 3 5 5 C 1.34760 * 116.99795 * 269.99380 * 4 2 1 6 6 O 1.21513 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.47403 * 119.99557 * 179.97438 * 5 4 2 8 8 C 1.40417 * 120.47453 * 180.02562 * 7 5 4 9 9 C 1.36831 * 118.48383 * 179.72635 * 8 7 5 10 10 C 1.39420 * 119.38889 * 359.97438 * 9 8 7 11 11 N 1.38420 * 119.53503 * 179.97438 * 10 9 8 12 12 C 1.46502 * 120.00163 * 5.00755 * 11 10 9 13 13 C 1.46505 * 120.00007 * 184.99812 * 11 10 9 14 14 N 1.32613 * 120.93198 * 0.02659 * 10 9 8 15 15 C 1.31664 * 121.64246 * 359.95140 * 14 10 9 16 16 C 1.50707 * 109.46600 * 240.00688 * 2 1 3 17 17 O 1.21285 * 119.99770 * 248.56374 * 16 2 1 18 18 N 1.34771 * 120.00109 * 68.57000 * 16 2 1 19 19 C 1.46501 * 120.00357 * 4.57945 * 18 16 2 20 20 C 1.46505 * 119.99824 * 184.58226 * 18 16 2 21 21 C 1.50700 * 109.47076 * 90.00136 * 20 18 16 22 22 H 1.08000 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99579 * 180.02562 * 21 20 18 24 24 N 1.31511 * 119.99494 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00425 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47412 * 89.99804 * 25 23 21 27 27 H 1.48499 * 109.47254 * 210.00225 * 25 23 21 28 28 H 1.48505 * 109.47023 * 329.99873 * 25 23 21 29 29 H 1.09000 * 109.47053 * 67.14077 * 1 2 3 30 30 H 1.09000 * 109.47289 * 187.15009 * 1 2 3 31 31 H 1.09003 * 109.46833 * 307.14505 * 1 2 3 32 32 H 1.08001 * 120.75695 * 359.74572 * 8 7 5 33 33 H 1.08003 * 120.30786 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47132 * 59.99493 * 12 11 10 35 35 H 1.09001 * 109.47429 * 179.97438 * 12 11 10 36 36 H 1.09007 * 109.46729 * 299.99622 * 12 11 10 37 37 H 1.09002 * 109.46599 * 90.00655 * 13 11 10 38 38 H 1.09003 * 109.46982 * 210.00084 * 13 11 10 39 39 H 1.08994 * 109.47119 * 330.00547 * 13 11 10 40 40 H 1.08004 * 119.74484 * 180.02562 * 15 14 10 41 41 H 1.09002 * 109.46665 * 86.11955 * 19 18 16 42 42 H 1.08996 * 109.47507 * 206.12292 * 19 18 16 43 43 H 1.09005 * 109.46694 * 326.12464 * 19 18 16 44 44 H 1.09006 * 109.46589 * 209.99979 * 20 18 16 45 45 H 1.08995 * 109.47054 * 329.99388 * 20 18 16 46 46 H 0.97006 * 120.00403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2181 0.0668 2.2853 6 8 1.9971 1.2612 2.2547 7 6 2.7082 -0.5607 3.5258 8 6 2.9238 0.2126 4.6779 9 6 3.3740 -0.4127 5.8087 10 6 3.6032 -1.7877 5.7850 11 7 4.0591 -2.4233 6.9270 12 6 4.1928 -1.6737 8.1787 13 6 4.4077 -3.8456 6.8842 14 7 3.3916 -2.4952 4.6835 15 6 2.9585 -1.9334 3.5743 16 6 2.0322 -0.7103 -1.2306 17 8 2.5962 -1.7790 -1.1262 18 7 1.8547 -0.1580 -2.4471 19 6 1.2644 1.1775 -2.5662 20 6 2.2521 -0.8932 -3.6504 21 6 1.0931 -1.7244 -4.1370 22 1 0.1545 -1.7071 -3.6030 23 6 1.2314 -2.5077 -5.2632 24 7 0.2200 -3.2335 -5.6874 25 14 2.8550 -2.5382 -6.1862 26 1 3.7177 -3.6139 -5.6351 27 1 2.6009 -2.7963 -7.6263 28 1 3.5372 -1.2283 -6.0310 29 1 -0.3633 0.3992 -0.9470 30 1 -0.3634 -1.0197 0.1279 31 1 -0.3633 0.6206 0.8192 32 1 2.7383 1.2765 4.6717 33 1 3.5501 0.1537 6.7113 34 1 3.2208 -1.2753 8.4692 35 1 4.5623 -2.3363 8.9614 36 1 4.8947 -0.8518 8.0367 37 1 5.4607 -3.9538 6.6239 38 1 4.2272 -4.2935 7.8614 39 1 3.7949 -4.3475 6.1356 40 1 2.7961 -2.5390 2.6949 41 1 2.0471 1.9303 -2.4732 42 1 0.7798 1.2752 -3.5377 43 1 0.5269 1.3205 -1.7763 44 1 2.5444 -0.1870 -4.4276 45 1 3.0939 -1.5449 -3.4165 46 1 0.3171 -3.7843 -6.4800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047787708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:56 Heat of formation + Delta-G solvation = -52.386900 kcal Electronic energy + Delta-G solvation = -28475.280268 eV Core-core repulsion = 24366.554867 eV Total energy + Delta-G solvation = -4108.725401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.99670 -40.17621 -38.91942 -36.97465 -36.27660 -34.99600 -32.90559 -32.79628 -31.86022 -30.82105 -28.69226 -28.31463 -26.49774 -26.17697 -24.38998 -23.61232 -23.00231 -21.89342 -20.72796 -18.85614 -18.38835 -17.74643 -17.07444 -16.94526 -16.50045 -16.07681 -15.94807 -15.70405 -15.33083 -14.95504 -14.69212 -14.62778 -14.16691 -13.88484 -13.60495 -13.47157 -13.18154 -13.08714 -12.90724 -12.76648 -12.69787 -12.42058 -12.31574 -12.29485 -12.20634 -11.79029 -11.48206 -11.31730 -10.88456 -10.68801 -10.66646 -10.50065 -10.44841 -10.15061 -10.11367 -9.69181 -9.55081 -8.99165 -8.59427 -8.04660 -7.76422 -6.09399 -4.08681 0.54047 1.07363 2.41686 2.49693 2.54679 3.19236 3.29957 3.35868 3.38123 3.66225 3.83423 4.16568 4.39482 4.43682 4.57334 4.67486 4.75304 4.79929 4.82434 4.88099 4.96604 5.05541 5.12584 5.12722 5.22282 5.24223 5.39822 5.44957 5.51071 5.61903 5.72166 5.74957 5.81523 5.92510 6.07851 6.15618 6.30550 6.40941 6.45337 6.67034 6.85057 6.92223 7.26319 7.58601 7.70366 7.80559 8.13537 8.44764 8.83998 8.94114 9.50390 11.03720 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002334 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.093954 B =11992.153526 C =12938.675813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.075 3.925 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.520 3.480 6 O -0.518 6.518 7 C -0.243 4.243 8 C 0.030 3.970 9 C -0.251 4.251 10 C 0.426 3.574 11 N -0.608 5.608 12 C 0.093 3.907 13 C 0.092 3.908 14 N -0.548 5.548 15 C 0.221 3.779 16 C 0.512 3.488 17 O -0.520 6.520 18 N -0.592 5.592 19 C 0.067 3.933 20 C 0.216 3.784 21 C -0.531 4.531 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.266 1.266 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.178 0.822 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 7.722 26.910 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.122 0.878 4 O -0.238 6.238 5 C 0.365 3.635 6 O -0.408 6.408 7 C -0.249 4.249 8 C 0.005 3.995 9 C -0.275 4.275 10 C 0.191 3.809 11 N -0.319 5.319 12 C -0.050 4.050 13 C -0.050 4.050 14 N -0.266 5.266 15 C 0.061 3.939 16 C 0.297 3.703 17 O -0.395 6.395 18 N -0.325 5.325 19 C -0.077 4.077 20 C 0.096 3.904 21 C -0.569 4.569 22 H 0.094 0.906 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.195 0.805 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.455 6.365 26.987 28.469 hybrid contribution 0.481 0.950 -0.661 1.254 sum 6.937 7.316 26.326 28.191 Atomic orbital electron populations 1.22309 0.92023 1.04410 1.04080 1.22577 0.96046 0.97293 0.82439 0.87776 1.86658 1.76763 1.40957 1.19430 1.20832 0.74027 0.84932 0.83662 1.90796 1.49608 1.15906 1.84487 1.19759 1.15819 0.95976 0.93351 1.21116 0.88301 1.00443 0.89642 1.21056 1.12088 0.93555 1.00825 1.18620 0.87226 0.88397 0.86689 1.46273 1.67920 1.10540 1.07188 1.21772 1.01818 0.96997 0.84436 1.21722 1.00898 0.79696 1.02718 1.67380 1.20890 1.38983 0.99306 1.23090 0.85177 0.91244 0.94414 1.19794 0.80647 0.86040 0.83818 1.90694 1.41628 1.21360 1.85804 1.47716 1.61181 1.17366 1.06269 1.22008 0.97971 0.83692 1.03991 1.19733 0.97238 0.92228 0.81203 1.21317 0.98791 1.25622 1.11219 0.90618 1.24851 0.96505 0.94706 0.96922 1.69893 1.30864 1.28115 1.24540 0.86849 0.84403 0.79260 0.79180 1.19840 1.21059 1.19048 0.88931 0.90469 0.91164 0.83604 0.84358 0.92043 0.90036 0.92030 0.92979 0.91586 0.89658 0.80539 0.93314 0.89963 0.91295 0.94892 0.94297 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.14 37.16 0.34 -2.15 16 2 C 0.07 1.26 2.17 -27.88 -0.06 1.20 16 3 H 0.10 1.59 6.73 -51.93 -0.35 1.24 16 4 O -0.32 -5.47 8.70 -47.29 -0.41 -5.88 16 5 C 0.52 7.87 7.87 34.46 0.27 8.14 16 6 O -0.52 -8.33 15.67 -19.28 -0.30 -8.64 16 7 C -0.24 -3.12 5.89 -104.83 -0.62 -3.74 16 8 C 0.03 0.32 9.65 -39.27 -0.38 -0.06 16 9 C -0.25 -2.26 9.26 -39.65 -0.37 -2.63 16 10 C 0.43 4.42 7.36 -155.30 -1.14 3.28 16 11 N -0.61 -4.74 3.37 -189.70 -0.64 -5.38 16 12 C 0.09 0.38 9.39 59.85 0.56 0.95 16 13 C 0.09 0.62 10.46 59.85 0.63 1.24 16 14 N -0.55 -6.76 9.04 -12.13 -0.11 -6.87 16 15 C 0.22 2.83 10.79 -17.11 -0.18 2.64 16 16 C 0.51 10.84 7.03 -10.98 -0.08 10.77 16 17 O -0.52 -13.14 16.08 -13.95 -0.22 -13.37 16 18 N -0.59 -12.28 2.86 -182.95 -0.52 -12.81 16 19 C 0.07 1.02 9.80 59.85 0.59 1.61 16 20 C 0.22 5.28 4.25 -5.19 -0.02 5.26 16 21 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 22 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 25 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 29 H 0.09 1.28 5.46 -51.93 -0.28 0.99 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.15 1.34 7.73 -52.49 -0.41 0.94 16 33 H 0.14 0.84 6.66 -52.48 -0.35 0.49 16 34 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 35 H 0.08 0.19 7.79 -51.93 -0.40 -0.22 16 36 H 0.06 0.22 7.71 -51.92 -0.40 -0.18 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 39 H 0.08 0.71 7.28 -51.93 -0.38 0.33 16 40 H 0.18 2.27 7.61 -52.48 -0.40 1.87 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 43 H 0.07 0.90 4.31 -51.93 -0.22 0.67 16 44 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 45 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -36.59 384.55 -7.66 -44.26 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.45 Total: -0.35 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.91 Total: 13.07 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.50 Total: -51.74 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.94 Total: -27.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.59 -7.66 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047787708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.130 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds