Wall clock time and date at job start Sat Apr 11 2020 04:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47395 * 2 1 4 4 O 1.45195 * 109.47264 * 120.00773 * 2 1 3 5 5 C 1.34760 * 116.99795 * 269.99380 * 4 2 1 6 6 O 1.21513 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.47403 * 119.99557 * 179.97438 * 5 4 2 8 8 C 1.40417 * 120.47453 * 180.02562 * 7 5 4 9 9 C 1.36831 * 118.48383 * 179.72635 * 8 7 5 10 10 C 1.39420 * 119.38889 * 359.97438 * 9 8 7 11 11 N 1.38420 * 119.53503 * 179.97438 * 10 9 8 12 12 C 1.46502 * 120.00163 * 5.00755 * 11 10 9 13 13 C 1.46505 * 120.00007 * 184.99812 * 11 10 9 14 14 N 1.32613 * 120.93198 * 0.02659 * 10 9 8 15 15 C 1.31664 * 121.64246 * 359.95140 * 14 10 9 16 16 C 1.50707 * 109.46600 * 240.00688 * 2 1 3 17 17 O 1.21285 * 119.99770 * 248.56374 * 16 2 1 18 18 N 1.34771 * 120.00109 * 68.57000 * 16 2 1 19 19 C 1.46501 * 120.00357 * 4.57945 * 18 16 2 20 20 C 1.46505 * 119.99824 * 184.58226 * 18 16 2 21 21 C 1.50700 * 109.47076 * 90.00136 * 20 18 16 22 22 H 1.08000 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.37878 * 119.99579 * 180.02562 * 21 20 18 24 24 N 1.31511 * 119.99494 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00425 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47412 * 89.99804 * 25 23 21 27 27 H 1.48499 * 109.47254 * 210.00225 * 25 23 21 28 28 H 1.48505 * 109.47023 * 329.99873 * 25 23 21 29 29 H 1.09000 * 109.47053 * 67.14077 * 1 2 3 30 30 H 1.09000 * 109.47289 * 187.15009 * 1 2 3 31 31 H 1.09003 * 109.46833 * 307.14505 * 1 2 3 32 32 H 1.08001 * 120.75695 * 359.74572 * 8 7 5 33 33 H 1.08003 * 120.30786 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47132 * 59.99493 * 12 11 10 35 35 H 1.09001 * 109.47429 * 179.97438 * 12 11 10 36 36 H 1.09007 * 109.46729 * 299.99622 * 12 11 10 37 37 H 1.09002 * 109.46599 * 90.00655 * 13 11 10 38 38 H 1.09003 * 109.46982 * 210.00084 * 13 11 10 39 39 H 1.08994 * 109.47119 * 330.00547 * 13 11 10 40 40 H 1.08004 * 119.74484 * 180.02562 * 15 14 10 41 41 H 1.09002 * 109.46665 * 86.11955 * 19 18 16 42 42 H 1.08996 * 109.47507 * 206.12292 * 19 18 16 43 43 H 1.09005 * 109.46694 * 326.12464 * 19 18 16 44 44 H 1.09006 * 109.46589 * 209.99979 * 20 18 16 45 45 H 1.08995 * 109.47054 * 329.99388 * 20 18 16 46 46 H 0.97006 * 120.00403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2181 0.0668 2.2853 6 8 1.9971 1.2612 2.2547 7 6 2.7082 -0.5607 3.5258 8 6 2.9238 0.2126 4.6779 9 6 3.3740 -0.4127 5.8087 10 6 3.6032 -1.7877 5.7850 11 7 4.0591 -2.4233 6.9270 12 6 4.1928 -1.6737 8.1787 13 6 4.4077 -3.8456 6.8842 14 7 3.3916 -2.4952 4.6835 15 6 2.9585 -1.9334 3.5743 16 6 2.0322 -0.7103 -1.2306 17 8 2.5962 -1.7790 -1.1262 18 7 1.8547 -0.1580 -2.4471 19 6 1.2644 1.1775 -2.5662 20 6 2.2521 -0.8932 -3.6504 21 6 1.0931 -1.7244 -4.1370 22 1 0.1545 -1.7071 -3.6030 23 6 1.2314 -2.5077 -5.2632 24 7 0.2200 -3.2335 -5.6874 25 14 2.8550 -2.5382 -6.1862 26 1 3.7177 -3.6139 -5.6351 27 1 2.6009 -2.7963 -7.6263 28 1 3.5372 -1.2283 -6.0310 29 1 -0.3633 0.3992 -0.9470 30 1 -0.3634 -1.0197 0.1279 31 1 -0.3633 0.6206 0.8192 32 1 2.7383 1.2765 4.6717 33 1 3.5501 0.1537 6.7113 34 1 3.2208 -1.2753 8.4692 35 1 4.5623 -2.3363 8.9614 36 1 4.8947 -0.8518 8.0367 37 1 5.4607 -3.9538 6.6239 38 1 4.2272 -4.2935 7.8614 39 1 3.7949 -4.3475 6.1356 40 1 2.7961 -2.5390 2.6949 41 1 2.0471 1.9303 -2.4732 42 1 0.7798 1.2752 -3.5377 43 1 0.5269 1.3205 -1.7763 44 1 2.5444 -0.1870 -4.4276 45 1 3.0939 -1.5449 -3.4165 46 1 0.3171 -3.7843 -6.4800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047787708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:55 Heat of formation + Delta-G solvation = -75.644537 kcal Electronic energy + Delta-G solvation = -28476.288795 eV Core-core repulsion = 24366.554867 eV Total energy + Delta-G solvation = -4109.733927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05728 -41.27782 -40.38843 -37.79428 -37.39972 -36.73352 -34.83181 -33.72891 -33.28081 -31.75848 -30.17974 -29.14648 -27.71477 -27.18745 -25.82322 -24.48272 -24.34977 -23.14994 -21.79462 -20.41572 -19.48114 -19.12986 -18.57199 -18.20801 -17.60043 -17.41445 -17.15373 -16.85649 -16.39482 -16.25709 -16.06306 -15.69820 -15.30017 -15.02025 -14.83363 -14.44672 -14.40114 -14.24804 -14.10048 -13.76361 -13.69991 -13.65660 -13.46039 -13.41367 -13.18014 -13.15593 -12.88938 -12.77026 -12.50144 -12.35496 -12.01020 -11.92753 -11.82566 -11.73167 -11.24274 -10.88271 -10.82590 -10.67353 -10.55456 -9.48906 -8.73458 -8.33180 -6.38468 -0.37911 0.26884 1.24295 1.34699 1.38327 1.45893 1.46330 1.56260 1.85888 2.31637 2.35276 2.78939 3.00962 3.35007 3.38870 3.60167 3.77788 3.83033 3.84139 3.86892 3.99927 4.23434 4.30077 4.46409 4.51001 4.53277 4.57968 4.63521 4.64662 4.75008 4.76746 4.82475 4.87127 4.90671 4.92543 4.96390 5.06970 5.13365 5.29048 5.36171 5.43991 5.53442 5.84508 6.15398 6.22408 6.48018 6.62310 6.63055 6.94438 7.14873 7.28866 8.83294 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002334 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.093954 B =11992.153526 C =12938.675813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 H 0.126 0.874 4 O -0.341 6.341 5 C 0.522 3.478 6 O -0.529 6.529 7 C -0.262 4.262 8 C 0.031 3.969 9 C -0.237 4.237 10 C 0.415 3.585 11 N -0.605 5.605 12 C 0.083 3.917 13 C 0.089 3.911 14 N -0.570 5.570 15 C 0.213 3.787 16 C 0.502 3.498 17 O -0.574 6.574 18 N -0.597 5.597 19 C 0.059 3.941 20 C 0.223 3.777 21 C -0.537 4.537 22 H 0.034 0.966 23 C 0.012 3.988 24 N -0.943 5.943 25 Si 0.946 3.054 26 H -0.278 1.278 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.163 0.837 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 10.041 29.130 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.144 0.856 4 O -0.257 6.257 5 C 0.369 3.631 6 O -0.420 6.420 7 C -0.269 4.269 8 C 0.006 3.994 9 C -0.261 4.261 10 C 0.178 3.822 11 N -0.314 5.314 12 C -0.058 4.058 13 C -0.054 4.054 14 N -0.289 5.289 15 C 0.053 3.947 16 C 0.289 3.711 17 O -0.453 6.453 18 N -0.329 5.329 19 C -0.083 4.083 20 C 0.101 3.899 21 C -0.575 4.575 22 H 0.052 0.948 23 C -0.186 4.186 24 N -0.582 5.582 25 Si 0.768 3.232 26 H -0.204 1.204 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.180 0.820 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.879 8.740 29.259 31.536 hybrid contribution 0.012 0.163 -1.146 1.158 sum 7.891 8.904 28.112 30.526 Atomic orbital electron populations 1.22297 0.90324 1.04039 1.05506 1.22492 0.97067 0.97223 0.80712 0.85613 1.86674 1.77180 1.41862 1.19964 1.21173 0.73580 0.84805 0.83577 1.90767 1.50516 1.16137 1.84627 1.19732 1.17710 0.96122 0.93317 1.21311 0.88008 1.00994 0.89106 1.21364 1.10275 0.93017 1.01468 1.19020 0.87018 0.89287 0.86871 1.46657 1.66240 1.11111 1.07434 1.22087 1.02883 0.97652 0.83186 1.21801 1.00476 0.79368 1.03744 1.67351 1.21874 1.39764 0.99905 1.22894 0.85939 0.91389 0.94510 1.20624 0.79649 0.85598 0.85181 1.90656 1.44064 1.23845 1.86773 1.47801 1.60996 1.18929 1.05184 1.22350 0.99543 0.81444 1.04941 1.19446 0.94874 0.92404 0.83203 1.21529 0.98568 1.26485 1.10933 0.94766 1.25820 1.00572 0.94162 0.98074 1.70040 1.33443 1.29305 1.25457 0.85747 0.79265 0.80376 0.77767 1.20376 1.19978 1.16016 0.88123 0.92119 0.88654 0.82128 0.80834 0.91004 0.87830 0.90870 0.92839 0.88686 0.91810 0.82023 0.89986 0.90085 0.88908 0.92464 0.96181 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.14 71.98 0.66 -4.03 16 2 C 0.08 2.77 2.17 29.85 0.06 2.84 16 3 H 0.13 3.63 6.73 -2.39 -0.02 3.61 16 4 O -0.34 -11.85 8.70 -50.36 -0.44 -12.29 16 5 C 0.52 15.78 7.87 70.24 0.55 16.33 16 6 O -0.53 -16.41 15.67 19.80 0.31 -16.10 16 7 C -0.26 -6.76 5.89 -20.00 -0.12 -6.88 16 8 C 0.03 0.60 9.65 22.47 0.22 0.81 16 9 C -0.24 -3.69 9.26 22.22 0.21 -3.48 16 10 C 0.42 8.03 7.36 133.27 0.98 9.02 16 11 N -0.60 -8.06 3.37 -754.07 -2.54 -10.60 16 12 C 0.08 0.39 9.39 127.77 1.20 1.58 16 13 C 0.09 1.06 10.46 127.77 1.34 2.39 16 14 N -0.57 -14.29 9.04 -192.29 -1.74 -16.03 16 15 C 0.21 5.72 10.79 85.05 0.92 6.64 16 16 C 0.50 21.68 7.03 87.66 0.62 22.30 16 17 O -0.57 -30.40 16.08 15.60 0.25 -30.15 16 18 N -0.60 -24.65 2.86 -851.10 -2.43 -27.09 16 19 C 0.06 1.68 9.80 127.77 1.25 2.93 16 20 C 0.22 10.89 4.25 85.63 0.36 11.25 16 21 C -0.54 -31.43 9.94 25.60 0.25 -31.18 16 22 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 23 C 0.01 0.71 5.47 84.66 0.46 1.17 16 24 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 25 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 28 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 29 H 0.10 2.66 5.46 -2.39 -0.01 2.65 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.16 2.58 7.73 -2.91 -0.02 2.56 16 33 H 0.17 1.39 6.66 -2.91 -0.02 1.37 16 34 H 0.07 0.23 8.09 -2.39 -0.02 0.22 16 35 H 0.10 0.06 7.79 -2.39 -0.02 0.04 16 36 H 0.07 0.22 7.71 -2.38 -0.02 0.20 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.57 7.92 -2.39 -0.02 0.55 16 39 H 0.06 1.06 7.28 -2.39 -0.02 1.04 16 40 H 0.16 4.63 7.61 -2.91 -0.02 4.61 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 43 H 0.09 2.20 4.31 -2.38 -0.01 2.19 16 44 H 0.06 2.53 7.13 -2.38 -0.02 2.51 16 45 H 0.02 1.06 6.79 -2.39 -0.02 1.05 16 46 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -83.70 384.55 5.50 -78.19 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.94 Total: 15.11 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 8.96 Total: 31.71 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -6.41 Total: -112.90 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: 0.12 Total: -58.54 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -83.70 5.50 -78.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047787708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.550 kcal (2) G-P(sol) polarization free energy of solvation -83.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds