Wall clock time and date at job start Sat Apr 11 2020 04:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46855 * 299.99389 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21582 * 119.99675 * 359.97438 * 16 15 14 18 18 C 1.47601 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.39730 * 120.08941 * 359.73052 * 18 16 15 20 20 C 1.37705 * 119.90982 * 179.76250 * 19 18 16 21 21 C 1.38993 * 120.09037 * 0.48351 * 20 19 18 22 22 O 1.35705 * 119.91322 * 179.74049 * 21 20 19 23 23 C 1.42905 * 116.99991 * 0.02572 * 22 21 20 24 24 C 1.50698 * 109.46807 * 179.97438 * 23 22 21 25 25 N 1.34786 * 119.99809 * 179.97438 * 24 23 22 26 26 O 1.21275 * 120.00682 * 0.02562 * 24 23 22 27 27 C 1.38995 * 120.17570 * 359.76900 * 21 20 19 28 28 C 1.37702 * 120.09049 * 359.97438 * 27 21 20 29 29 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 31 31 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.08006 * 120.04355 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.95284 * 180.20626 * 20 19 18 41 41 H 1.08997 * 109.47284 * 299.99457 * 23 22 21 42 42 H 1.08997 * 109.46969 * 59.99789 * 23 22 21 43 43 H 0.96999 * 119.99867 * 0.02562 * 25 24 23 44 44 H 0.96996 * 119.99836 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.95562 * 179.97438 * 27 21 20 46 46 H 1.07995 * 120.04842 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.5157 -1.6757 -6.7281 12 1 1.5906 0.6060 -7.5448 13 1 3.5834 -0.4141 -6.6121 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6263 -1.4466 3.7797 18 6 1.6053 0.3491 4.8680 19 6 0.8851 1.5395 4.7393 20 6 0.5189 2.2455 5.8634 21 6 0.8733 1.7806 7.1245 22 8 0.5150 2.4819 8.2296 23 6 -0.2248 3.6868 8.0218 24 6 -0.5316 4.3237 9.3527 25 7 -1.2252 5.4782 9.4034 26 8 -0.1536 3.7979 10.3782 27 6 1.5942 0.5996 7.2566 28 6 1.9597 -0.1150 6.1376 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 0.6132 1.9037 3.7595 40 1 -0.0407 3.1639 5.7649 41 1 0.3648 4.3753 7.4165 42 1 -1.1570 3.4564 7.5061 43 1 -1.5272 5.8990 8.5832 44 1 -1.4224 5.8883 10.2600 45 1 1.8680 0.2418 8.2381 46 1 2.5202 -1.0323 6.2410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753623504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:40 Heat of formation + Delta-G solvation = -79.280742 kcal Electronic energy + Delta-G solvation = -27038.763218 eV Core-core repulsion = 22928.871613 eV Total energy + Delta-G solvation = -4109.891605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.03715 -40.12706 -39.32090 -37.47001 -36.71473 -34.44085 -34.39615 -32.68115 -31.55879 -30.88547 -29.98539 -28.87041 -26.54451 -25.40718 -23.69905 -23.31514 -22.33105 -21.29621 -20.64006 -19.93979 -19.04309 -18.31936 -17.91532 -17.03410 -16.99247 -16.84553 -16.46407 -15.66138 -15.46880 -15.24037 -14.87594 -14.66247 -14.37937 -14.30973 -14.22649 -13.82354 -13.61604 -13.36658 -13.08860 -12.98054 -12.71912 -12.60645 -12.32575 -12.06875 -11.59202 -11.40198 -11.07690 -10.91536 -10.71713 -10.60922 -10.59135 -10.44614 -10.40595 -10.14653 -9.94372 -9.67817 -9.51178 -9.10725 -8.88288 -8.66567 -6.93540 -5.78275 -3.06553 0.55546 0.90392 1.89830 2.04407 2.66786 3.10827 3.19384 3.43985 3.48197 3.49300 3.56550 4.01534 4.22770 4.32603 4.33523 4.39436 4.56887 4.58781 4.79587 4.97469 5.03377 5.17282 5.20228 5.36082 5.51675 5.56738 5.65811 5.77815 5.79851 5.92829 5.96797 6.02473 6.04747 6.10369 6.19198 6.22435 6.37377 6.46291 6.53783 6.63103 6.75784 6.79281 6.85334 7.45062 7.53894 7.69210 8.15503 8.40958 9.52236 10.09406 10.44257 11.44664 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.001640 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.133291 B =17069.199937 C =18290.733589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.558 3.442 17 O -0.541 6.541 18 C -0.168 4.168 19 C -0.043 4.043 20 C -0.218 4.218 21 C 0.150 3.850 22 O -0.287 6.287 23 C 0.036 3.964 24 C 0.520 3.480 25 N -0.850 5.850 26 O -0.518 6.518 27 C -0.155 4.155 28 C -0.018 4.018 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.404 0.596 44 H 0.410 0.590 45 H 0.140 0.860 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 8.855 28.131 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.372 5.372 16 C 0.345 3.655 17 O -0.420 6.420 18 C -0.172 4.172 19 C -0.062 4.062 20 C -0.237 4.237 21 C 0.104 3.896 22 O -0.199 6.199 23 C -0.042 4.042 24 C 0.303 3.697 25 N -0.417 5.417 26 O -0.391 6.391 27 C -0.173 4.173 28 C -0.037 4.037 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.233 0.767 44 H 0.242 0.758 45 H 0.158 0.842 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.924 7.463 28.809 30.165 hybrid contribution -0.601 1.067 -1.355 1.826 sum -5.525 8.530 27.454 29.275 Atomic orbital electron populations 1.21795 0.94681 1.02022 1.01403 1.21559 0.96696 1.00505 0.94231 0.90543 1.20576 0.96660 0.94224 0.85333 1.42322 1.66976 1.27640 1.00566 1.19206 1.28654 1.05555 0.83670 0.91183 1.24727 1.00945 0.97458 0.97844 1.69643 1.43292 1.16869 1.28587 0.86251 0.78029 0.77715 0.84101 1.21265 1.21711 1.21253 1.21448 1.00288 0.95302 0.82679 1.45978 1.57551 1.27822 1.05884 1.18121 0.79412 0.84827 0.83111 1.90783 1.40244 1.24211 1.86719 1.19935 1.05428 0.97686 0.94124 1.21122 0.93797 0.92686 0.98586 1.21143 1.07671 1.03240 0.91651 1.19274 0.93577 0.91551 0.85185 1.86124 1.69117 1.34712 1.29922 1.22510 0.98196 0.87263 0.96270 1.20034 0.78001 0.81132 0.90538 1.43657 1.59162 1.25594 1.13282 1.90829 1.50594 1.62091 1.35624 1.20431 1.02470 0.94236 1.00183 1.21121 0.94314 0.98405 0.89877 0.92739 0.94024 0.91111 0.95950 0.96071 0.78232 0.93502 0.91158 0.91161 0.76609 0.85033 0.84801 0.88385 0.88399 0.76717 0.75829 0.84199 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.94 37.15 0.33 -1.68 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 6 C -0.24 -6.66 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.94 -27.83 13.06 55.49 0.72 -27.11 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.72 -8.35 5.23 -61.33 -0.32 -8.67 16 16 C 0.56 7.26 7.76 -12.44 -0.10 7.17 16 17 O -0.54 -9.00 16.34 5.29 0.09 -8.91 16 18 C -0.17 -1.75 5.88 -104.96 -0.62 -2.37 16 19 C -0.04 -0.34 9.53 -39.22 -0.37 -0.71 16 20 C -0.22 -1.47 9.01 -39.50 -0.36 -1.83 16 21 C 0.15 1.26 6.70 -39.02 -0.26 1.00 16 22 O -0.29 -2.50 9.66 -38.73 -0.37 -2.88 16 23 C 0.04 0.16 5.21 36.00 0.19 0.35 16 24 C 0.52 3.25 8.18 -10.98 -0.09 3.16 16 25 N -0.85 -1.51 8.87 31.22 0.28 -1.24 16 26 O -0.52 -6.09 17.34 -14.35 -0.25 -6.33 16 27 C -0.15 -1.38 9.97 -39.50 -0.39 -1.77 16 28 C -0.02 -0.18 9.59 -39.22 -0.38 -0.56 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 3.62 5.68 -40.82 -0.23 3.39 16 39 H 0.13 0.75 6.40 -52.48 -0.34 0.41 16 40 H 0.13 0.47 6.28 -52.49 -0.33 0.14 16 41 H 0.10 0.20 7.65 -51.93 -0.40 -0.20 16 42 H 0.10 0.19 7.65 -51.93 -0.40 -0.21 16 43 H 0.40 -0.64 8.83 -40.82 -0.36 -1.00 16 44 H 0.41 0.52 8.93 -40.82 -0.36 0.16 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.15 1.42 7.64 -52.49 -0.40 1.02 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -37.97 389.44 -8.23 -46.20 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.35 Total: 5.80 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.56 Total: -1.63 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.36 Total: -55.38 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.54 Total: -18.12 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.97 -8.23 -46.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753623504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.080 kcal (2) G-P(sol) polarization free energy of solvation -37.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds