Wall clock time and date at job start Sat Apr 11 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46941 * 2 1 4 4 C 1.52995 * 109.47298 * 120.00646 * 2 1 3 5 5 N 1.46504 * 109.47010 * 294.99497 * 4 2 1 6 6 C 1.36935 * 119.99735 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00104 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99629 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00038 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00226 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47212 * 89.99620 * 10 8 6 12 12 H 1.48500 * 109.47403 * 209.99742 * 10 8 6 13 13 H 1.48501 * 109.47165 * 329.99862 * 10 8 6 14 14 C 1.53000 * 109.46821 * 240.00597 * 2 1 3 15 15 N 1.46503 * 109.47279 * 64.99968 * 14 2 1 16 16 C 1.34775 * 120.00215 * 179.97438 * 15 14 2 17 17 O 1.21627 * 119.99787 * 0.02562 * 16 15 14 18 18 C 1.47285 * 120.00481 * 179.97438 * 16 15 14 19 19 C 1.36592 * 127.53496 * 359.95456 * 18 16 15 20 20 O 1.34101 * 108.89340 * 179.97438 * 19 18 16 21 21 C 1.33390 * 111.29487 * 359.50118 * 20 19 18 22 22 C 1.36161 * 108.05100 * 0.91187 * 21 20 19 23 23 C 1.47711 * 122.21637 * 178.95040 * 22 21 20 24 24 O 1.21620 * 122.33444 * 223.70280 * 23 22 21 25 25 N 1.35753 * 115.33902 * 43.67815 * 23 22 21 26 26 C 1.45337 * 119.17933 * 14.06962 * 25 23 22 27 27 C 1.52900 * 113.82622 * 273.93975 * 26 25 23 28 28 C 1.50517 * 128.60260 * 181.00876 * 21 20 19 29 29 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46962 * 299.99291 * 1 2 3 31 31 H 1.08998 * 109.47362 * 59.99204 * 1 2 3 32 32 H 1.08997 * 109.47169 * 55.00020 * 4 2 1 33 33 H 1.09000 * 109.47119 * 175.00194 * 4 2 1 34 34 H 0.96999 * 119.99985 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00170 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47408 * 304.99600 * 14 2 1 37 37 H 1.09000 * 109.47197 * 184.99770 * 14 2 1 38 38 H 0.97004 * 119.99891 * 359.97438 * 15 14 2 39 39 H 1.08000 * 125.55031 * 359.95097 * 19 18 16 40 40 H 0.97000 * 120.41138 * 194.05012 * 25 23 22 41 41 H 1.08998 * 108.61206 * 152.81625 * 26 25 23 42 42 H 1.09002 * 108.49956 * 34.98480 * 26 25 23 43 43 H 1.09003 * 109.46873 * 284.34117 * 27 26 25 44 44 H 1.09003 * 109.46110 * 164.35031 * 27 26 25 45 45 H 1.09002 * 109.45503 * 349.15946 * 28 21 20 46 46 H 1.09000 * 109.45232 * 229.20159 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6526 0.0352 2.4423 6 6 2.0013 -0.4211 3.6855 7 1 2.5622 -1.3384 3.7862 8 6 1.6337 0.2955 4.8161 9 7 1.9683 -0.1433 6.0110 10 14 0.6628 1.8818 4.6418 11 1 -0.7906 1.5779 4.6657 12 1 0.9965 2.7926 5.7662 13 1 1.0104 2.5361 3.3549 14 6 2.0399 -0.7211 -1.2493 15 7 1.6523 0.0356 -2.4424 16 6 1.9963 -0.4127 -3.6660 17 8 2.6280 -1.4458 -3.7797 18 6 1.6061 0.3477 -4.8655 19 6 0.9001 1.5159 -4.9172 20 8 0.7562 1.8799 -6.1998 21 6 1.3468 1.0092 -7.0197 22 6 1.8885 0.0164 -6.2615 23 6 2.6021 -1.1306 -6.8591 24 8 2.4292 -2.2733 -6.4802 25 7 3.4640 -0.8206 -7.8610 26 6 3.8532 0.5659 -8.0573 27 6 2.8871 1.3600 -8.9370 28 6 1.4417 1.0489 -8.5213 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7199 1.2949 33 1 3.1263 -0.7995 1.2054 34 1 1.1484 0.8589 2.3518 35 1 1.7112 0.3572 6.8011 36 1 1.6054 -1.7197 -1.2953 37 1 3.1262 -0.7994 -1.2058 38 1 1.1481 0.8593 -2.3517 39 1 0.5195 2.0578 -4.0640 40 1 3.8160 -1.5158 -8.4386 41 1 4.8411 0.5881 -8.5174 42 1 3.9136 1.0495 -7.0823 43 1 3.0331 1.0811 -9.9805 44 1 3.0784 2.4262 -8.8157 45 1 0.7785 1.8234 -8.9067 46 1 1.1466 0.0822 -8.9295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:47 Heat of formation + Delta-G solvation = -45.040313 kcal Electronic energy + Delta-G solvation = -28517.942794 eV Core-core repulsion = 24409.535965 eV Total energy + Delta-G solvation = -4108.406829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.34226 -39.78320 -39.55532 -37.01745 -36.88073 -34.50456 -33.38641 -33.27263 -32.40823 -30.71664 -30.17417 -27.05218 -26.54881 -25.76724 -24.49285 -23.50579 -22.13617 -21.67581 -20.50478 -20.11786 -19.71323 -17.92437 -17.72965 -17.40814 -16.94590 -16.81604 -16.02821 -15.82324 -15.64039 -15.35340 -15.02654 -14.51944 -14.42335 -14.32550 -14.09360 -13.78298 -13.56294 -13.52019 -13.24615 -13.06609 -12.62898 -12.47233 -12.38250 -12.19970 -11.97691 -11.59848 -11.45483 -11.06116 -10.78612 -10.62779 -10.60768 -10.38708 -10.17505 -10.16155 -10.01152 -9.58305 -9.48807 -9.15779 -9.03248 -8.90228 -7.23347 -5.76489 -3.12165 0.86831 1.03582 2.08638 2.50937 2.93642 3.00860 3.24660 3.34989 3.37151 3.43604 3.88571 4.01922 4.15884 4.23458 4.32817 4.55416 4.58128 4.69163 4.81634 4.84434 5.00205 5.03600 5.06336 5.09470 5.22710 5.24073 5.33181 5.43424 5.53836 5.55861 5.65961 5.73138 5.88963 5.90886 6.07206 6.23165 6.35804 6.38207 6.44144 6.56819 6.66114 6.74557 6.75546 7.38858 7.93917 8.00076 8.14808 8.42374 9.21208 9.93177 10.12942 11.41983 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.002091 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.921812 B =13389.920056 C =14019.321139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.129 3.871 15 N -0.722 5.722 16 C 0.575 3.425 17 O -0.510 6.510 18 C -0.176 4.176 19 C 0.012 3.988 20 O -0.156 6.156 21 C 0.034 3.966 22 C -0.192 4.192 23 C 0.592 3.408 24 O -0.490 6.490 25 N -0.733 5.733 26 C 0.106 3.894 27 C -0.135 4.135 28 C -0.042 4.042 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.396 0.604 39 H 0.219 0.781 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 8.561 -36.272 37.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.375 5.375 16 C 0.361 3.639 17 O -0.385 6.385 18 C -0.181 4.181 19 C -0.057 4.057 20 O -0.050 6.050 21 C -0.018 4.018 22 C -0.197 4.197 23 C 0.378 3.622 24 O -0.362 6.362 25 N -0.388 5.388 26 C -0.020 4.020 27 C -0.174 4.174 28 C -0.079 4.079 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.236 0.764 40 H 0.241 0.759 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.869 7.392 -35.903 36.666 hybrid contribution -0.822 1.370 0.109 1.602 sum -1.691 8.763 -35.794 36.890 Atomic orbital electron populations 1.21818 0.94756 1.02413 1.01110 1.21609 0.96631 1.00537 0.94574 0.90572 1.20555 0.97269 0.94285 0.84231 1.42682 1.67897 1.27081 1.02353 1.19072 1.29478 1.07028 0.81712 0.89153 1.24686 1.00865 0.98640 0.95116 1.69702 1.51317 1.40275 0.96908 0.86538 0.80437 0.84624 0.76851 1.21080 1.21738 1.20424 1.21421 1.00463 0.95354 0.82228 1.45866 1.58095 1.27846 1.05666 1.17136 0.80154 0.84713 0.81906 1.90904 1.38593 1.22890 1.86104 1.20943 1.06015 0.97813 0.93318 1.24617 1.00396 0.96354 0.84307 1.83559 1.59915 1.45378 1.16172 1.22662 0.97102 0.88212 0.93799 1.20944 1.07906 0.98565 0.92285 1.17626 0.78440 0.87285 0.78820 1.90906 1.63537 1.21805 1.59990 1.45689 1.48914 1.09324 1.34859 1.21171 0.97904 0.81985 1.00951 1.22263 0.92742 1.01462 1.00917 1.20314 0.98946 1.04807 0.83873 0.92231 0.91829 0.93719 0.95008 0.95198 0.80660 0.93066 0.90886 0.90960 0.77021 0.76443 0.75865 0.89628 0.90798 0.89696 0.89594 0.88872 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 5 N -0.75 -17.69 5.13 -59.91 -0.31 -18.00 16 6 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 9 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 10 Si 0.89 21.92 27.74 -169.99 -4.71 17.20 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 14 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 15 N -0.72 -8.28 5.28 -61.43 -0.32 -8.61 16 16 C 0.58 8.10 7.81 -12.58 -0.10 8.00 16 17 O -0.51 -9.60 15.77 -3.77 -0.06 -9.66 16 18 C -0.18 -1.98 6.32 -103.61 -0.65 -2.63 16 19 C 0.01 0.09 11.61 30.14 0.35 0.44 16 20 O -0.16 -1.16 10.48 8.61 0.09 -1.07 16 21 C 0.03 0.26 6.35 -35.14 -0.22 0.04 16 22 C -0.19 -2.13 4.99 -103.57 -0.52 -2.65 16 23 C 0.59 7.42 7.29 -11.95 -0.09 7.34 16 24 O -0.49 -8.58 17.12 -3.77 -0.06 -8.64 16 25 N -0.73 -5.53 5.26 -61.87 -0.33 -5.86 16 26 C 0.11 0.48 6.00 -4.72 -0.03 0.45 16 27 C -0.13 -0.32 6.32 -26.48 -0.17 -0.49 16 28 C -0.04 -0.17 5.65 -27.67 -0.16 -0.33 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 31 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.36 8.12 4.71 -40.82 -0.19 7.93 16 35 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.40 3.23 6.65 -40.82 -0.27 2.96 16 39 H 0.22 0.68 7.49 -52.49 -0.39 0.29 16 40 H 0.40 2.38 8.95 -40.82 -0.37 2.01 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.46 6.93 -51.93 -0.36 0.10 16 43 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 44 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 0.42 8.04 -51.93 -0.42 0.00 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -39.86 376.85 -7.59 -47.44 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.56 Total: 5.78 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.77 Total: 4.47 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.18 Total: -61.19 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.03 Total: -19.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.86 -7.59 -47.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.403 kcal (2) G-P(sol) polarization free energy of solvation -39.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds