Wall clock time and date at job start Sat Apr 11 2020 04:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46440 * 2 1 4 4 C 1.52997 * 109.46992 * 239.99777 * 2 1 3 5 5 N 1.46501 * 109.46986 * 65.00019 * 4 2 1 6 6 C 1.36943 * 119.99680 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99753 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00009 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99759 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46892 * 90.00498 * 10 8 6 12 12 H 1.48502 * 109.47108 * 210.00042 * 10 8 6 13 13 H 1.48495 * 109.47450 * 330.00272 * 10 8 6 14 14 C 1.52999 * 109.46924 * 119.99489 * 2 1 3 15 15 N 1.46502 * 109.47535 * 295.00314 * 14 2 1 16 16 C 1.34770 * 119.99881 * 180.02562 * 15 14 2 17 17 O 1.21616 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.47291 * 119.99927 * 179.97438 * 16 15 14 19 19 C 1.36592 * 127.53670 * 359.97438 * 18 16 15 20 20 O 1.34101 * 108.89340 * 179.90883 * 19 18 16 21 21 C 1.33390 * 111.29487 * 359.50118 * 20 19 18 22 22 C 1.36161 * 108.05100 * 0.91187 * 21 20 19 23 23 C 1.47711 * 122.21637 * 178.95040 * 22 21 20 24 24 O 1.21620 * 122.33444 * 223.70280 * 23 22 21 25 25 N 1.35753 * 115.33902 * 43.67815 * 23 22 21 26 26 C 1.45337 * 119.17933 * 14.06962 * 25 23 22 27 27 C 1.52900 * 113.82622 * 273.93975 * 26 25 23 28 28 C 1.50517 * 128.60260 * 181.00876 * 21 20 19 29 29 H 1.08993 * 109.46946 * 60.00485 * 1 2 3 30 30 H 1.09004 * 109.46530 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47310 * 300.00069 * 1 2 3 32 32 H 1.09001 * 109.46781 * 184.99821 * 4 2 1 33 33 H 1.09000 * 109.46868 * 304.99969 * 4 2 1 34 34 H 0.96995 * 120.00395 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99533 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46745 * 175.00101 * 14 2 1 37 37 H 1.08998 * 109.47156 * 55.00352 * 14 2 1 38 38 H 0.96994 * 119.99767 * 359.97438 * 15 14 2 39 39 H 1.07998 * 125.55639 * 359.95554 * 19 18 16 40 40 H 0.96998 * 120.41050 * 194.09394 * 25 23 22 41 41 H 1.08998 * 108.61206 * 152.81625 * 26 25 23 42 42 H 1.09002 * 108.49956 * 34.98480 * 26 25 23 43 43 H 1.09003 * 109.46873 * 284.34117 * 27 26 25 44 44 H 1.09003 * 109.46110 * 164.35031 * 27 26 25 45 45 H 1.09002 * 109.45503 * 349.15946 * 28 21 20 46 46 H 1.09000 * 109.45232 * 229.20159 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0020 -0.4204 -3.6855 7 1 2.5637 -1.3373 -3.7863 8 6 1.6343 0.2962 -4.8161 9 7 0.9501 1.4139 -4.6931 10 14 2.1117 -0.3251 -6.5118 11 1 1.0426 -1.2148 -7.0320 12 1 2.2862 0.8285 -7.4306 13 1 3.3856 -1.0827 -6.4209 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9964 -0.4129 3.6659 17 8 2.6290 -1.4454 3.7796 18 6 1.6072 0.3481 4.8655 19 6 0.9033 1.5175 4.9171 20 8 0.7574 1.8802 6.1998 21 6 1.3261 0.9962 7.0209 22 6 1.8900 0.0168 6.2614 23 6 2.6273 -1.1158 6.8575 24 8 3.6845 -1.5133 6.4064 25 7 2.0430 -1.6819 7.9442 26 6 0.6553 -1.3719 8.2448 27 6 0.4724 -0.1033 9.0786 28 6 1.3759 1.0085 8.5252 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.1483 0.8590 -2.3518 35 1 0.6929 1.9144 -5.4832 36 1 3.1264 -0.7993 1.2056 37 1 1.6055 -1.7197 1.2953 38 1 1.1489 0.8595 2.3518 39 1 0.5250 2.0610 4.0639 40 1 2.5456 -2.2856 8.5133 41 1 0.2212 -2.2110 8.7883 42 1 0.1165 -1.2511 7.3050 43 1 0.7413 -0.3079 10.1150 44 1 -0.5685 0.2165 9.0297 45 1 1.0290 1.9745 8.8921 46 1 2.4010 0.8415 8.8559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:52 Heat of formation + Delta-G solvation = -49.578163 kcal Electronic energy + Delta-G solvation = -28437.376731 eV Core-core repulsion = 24328.773127 eV Total energy + Delta-G solvation = -4108.603605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.29169 -39.74613 -39.48380 -36.94908 -36.75113 -34.36738 -33.33104 -33.23660 -32.37024 -30.48974 -29.86126 -26.97185 -26.42342 -25.51255 -24.44904 -23.51820 -22.35352 -21.74232 -20.38657 -20.07236 -19.53189 -17.81967 -17.65342 -17.10417 -16.85782 -16.72389 -15.98908 -15.77604 -15.54050 -15.27896 -14.96591 -14.57389 -14.38060 -14.19809 -13.97149 -13.64926 -13.55567 -13.49795 -13.10380 -12.99108 -12.61585 -12.35049 -12.30490 -12.05522 -11.92838 -11.56743 -11.05866 -10.90758 -10.69474 -10.57480 -10.42318 -10.34876 -10.12796 -10.10664 -9.92998 -9.66396 -9.45713 -9.09721 -8.96460 -8.86590 -6.91252 -5.76329 -3.04479 0.92088 1.08546 2.13736 2.54834 2.98088 3.07664 3.30368 3.44908 3.50226 3.51935 3.93462 4.06265 4.19552 4.27175 4.37567 4.59285 4.60666 4.73521 4.85834 4.97565 5.05649 5.08331 5.14462 5.23138 5.27621 5.36371 5.38396 5.48508 5.58849 5.61144 5.81757 5.97439 6.02494 6.11440 6.23673 6.39305 6.40968 6.48455 6.59960 6.65469 6.77721 6.78680 6.87917 7.46976 7.71891 7.97352 8.21499 8.43028 9.54307 10.11492 10.46401 11.46725 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.001942 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.704713 B =14413.408296 C =14975.765817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.721 5.721 16 C 0.575 3.425 17 O -0.512 6.512 18 C -0.176 4.176 19 C 0.013 3.987 20 O -0.156 6.156 21 C 0.033 3.967 22 C -0.192 4.192 23 C 0.592 3.408 24 O -0.491 6.491 25 N -0.733 5.733 26 C 0.106 3.894 27 C -0.135 4.135 28 C -0.042 4.042 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.396 0.604 39 H 0.220 0.780 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 1.280 33.430 33.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.005 3.995 15 N -0.373 5.373 16 C 0.361 3.639 17 O -0.387 6.387 18 C -0.181 4.181 19 C -0.056 4.056 20 O -0.050 6.050 21 C -0.019 4.019 22 C -0.197 4.197 23 C 0.378 3.622 24 O -0.362 6.362 25 N -0.388 5.388 26 C -0.020 4.020 27 C -0.174 4.174 28 C -0.079 4.079 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.231 0.769 39 H 0.236 0.764 40 H 0.241 0.759 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.534 0.555 33.071 33.385 hybrid contribution -0.046 0.199 -1.008 1.028 sum -4.579 0.754 32.064 32.398 Atomic orbital electron populations 1.21795 0.94673 1.01990 1.01396 1.21557 0.96681 1.00532 0.94174 0.90486 1.20579 0.96711 0.94215 0.85317 1.42335 1.66916 1.27693 1.00586 1.19248 1.28536 1.05430 0.83654 0.91136 1.24737 1.01089 0.97425 0.97869 1.69657 1.43661 1.16623 1.28449 0.86171 0.78042 0.77498 0.84390 1.21748 1.21801 1.20746 1.21441 1.00394 0.95210 0.82447 1.45872 1.57960 1.27848 1.05642 1.17137 0.79957 0.84887 0.81947 1.90893 1.38275 1.23387 1.86173 1.20955 1.05917 0.97974 0.93287 1.24642 1.00630 0.95978 0.84327 1.83560 1.60604 1.44702 1.16153 1.22652 0.96377 0.89163 0.93662 1.20939 1.06632 0.99950 0.92190 1.17631 0.84199 0.80986 0.79344 1.90905 1.22480 1.62374 1.60484 1.45689 1.13712 1.50080 1.29331 1.21169 0.82554 0.97544 1.00726 1.22262 1.00587 0.94096 1.00434 1.20308 1.02639 1.01418 0.83556 0.91110 0.92771 0.94015 0.96025 0.95939 0.78225 0.93562 0.91105 0.91174 0.76941 0.76361 0.75900 0.89667 0.90787 0.89728 0.89598 0.88875 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.35 5.33 -59.91 -0.32 -18.67 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.13 1.84 5.06 -4.04 -0.02 1.82 16 15 N -0.72 -8.83 5.28 -61.43 -0.32 -9.16 16 16 C 0.58 8.44 7.81 -12.58 -0.10 8.34 16 17 O -0.51 -9.91 15.77 -3.73 -0.06 -9.97 16 18 C -0.18 -2.08 6.32 -103.60 -0.65 -2.73 16 19 C 0.01 0.10 11.61 30.14 0.35 0.45 16 20 O -0.16 -1.23 10.48 8.61 0.09 -1.14 16 21 C 0.03 0.27 6.35 -35.14 -0.22 0.05 16 22 C -0.19 -2.21 4.99 -103.57 -0.52 -2.72 16 23 C 0.59 7.62 7.29 -11.95 -0.09 7.53 16 24 O -0.49 -8.75 17.12 -3.73 -0.06 -8.81 16 25 N -0.73 -5.72 5.26 -61.87 -0.33 -6.04 16 26 C 0.11 0.50 6.00 -4.72 -0.03 0.47 16 27 C -0.13 -0.35 6.32 -26.48 -0.17 -0.52 16 28 C -0.04 -0.18 5.65 -27.67 -0.16 -0.34 16 29 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 3.59 6.66 -40.82 -0.27 3.32 16 39 H 0.22 0.82 7.49 -52.49 -0.39 0.43 16 40 H 0.40 2.47 8.95 -40.82 -0.37 2.10 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.48 6.93 -51.93 -0.36 0.12 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.10 0.45 8.04 -51.93 -0.42 0.03 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -38.89 379.97 -7.94 -46.83 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.61 Total: 6.58 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.76 Total: 4.53 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.24 Total: -61.32 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.03 Total: -19.92 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.89 -7.94 -46.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.747 kcal (2) G-P(sol) polarization free energy of solvation -38.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds