Wall clock time and date at job start Sat Apr 11 2020 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46440 * 2 1 4 4 C 1.52997 * 109.46992 * 239.99777 * 2 1 3 5 5 N 1.46501 * 109.46986 * 65.00019 * 4 2 1 6 6 C 1.36943 * 119.99680 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99753 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00009 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99759 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46892 * 90.00498 * 10 8 6 12 12 H 1.48502 * 109.47108 * 210.00042 * 10 8 6 13 13 H 1.48495 * 109.47450 * 330.00272 * 10 8 6 14 14 C 1.52999 * 109.46924 * 119.99489 * 2 1 3 15 15 N 1.46502 * 109.47535 * 295.00314 * 14 2 1 16 16 C 1.34770 * 119.99881 * 180.02562 * 15 14 2 17 17 O 1.21616 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.47291 * 119.99927 * 179.97438 * 16 15 14 19 19 C 1.36592 * 127.53670 * 359.97438 * 18 16 15 20 20 O 1.34101 * 108.89340 * 179.90883 * 19 18 16 21 21 C 1.33390 * 111.29487 * 359.50118 * 20 19 18 22 22 C 1.36161 * 108.05100 * 0.91187 * 21 20 19 23 23 C 1.47711 * 122.21637 * 178.95040 * 22 21 20 24 24 O 1.21620 * 122.33444 * 223.70280 * 23 22 21 25 25 N 1.35753 * 115.33902 * 43.67815 * 23 22 21 26 26 C 1.45337 * 119.17933 * 14.06962 * 25 23 22 27 27 C 1.52900 * 113.82622 * 273.93975 * 26 25 23 28 28 C 1.50517 * 128.60260 * 181.00876 * 21 20 19 29 29 H 1.08993 * 109.46946 * 60.00485 * 1 2 3 30 30 H 1.09004 * 109.46530 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47310 * 300.00069 * 1 2 3 32 32 H 1.09001 * 109.46781 * 184.99821 * 4 2 1 33 33 H 1.09000 * 109.46868 * 304.99969 * 4 2 1 34 34 H 0.96995 * 120.00395 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99533 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46745 * 175.00101 * 14 2 1 37 37 H 1.08998 * 109.47156 * 55.00352 * 14 2 1 38 38 H 0.96994 * 119.99767 * 359.97438 * 15 14 2 39 39 H 1.07998 * 125.55639 * 359.95554 * 19 18 16 40 40 H 0.96998 * 120.41050 * 194.09394 * 25 23 22 41 41 H 1.08998 * 108.61206 * 152.81625 * 26 25 23 42 42 H 1.09002 * 108.49956 * 34.98480 * 26 25 23 43 43 H 1.09003 * 109.46873 * 284.34117 * 27 26 25 44 44 H 1.09003 * 109.46110 * 164.35031 * 27 26 25 45 45 H 1.09002 * 109.45503 * 349.15946 * 28 21 20 46 46 H 1.09000 * 109.45232 * 229.20159 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0020 -0.4204 -3.6855 7 1 2.5637 -1.3373 -3.7863 8 6 1.6343 0.2962 -4.8161 9 7 0.9501 1.4139 -4.6931 10 14 2.1117 -0.3251 -6.5118 11 1 1.0426 -1.2148 -7.0320 12 1 2.2862 0.8285 -7.4306 13 1 3.3856 -1.0827 -6.4209 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9964 -0.4129 3.6659 17 8 2.6290 -1.4454 3.7796 18 6 1.6072 0.3481 4.8655 19 6 0.9033 1.5175 4.9171 20 8 0.7574 1.8802 6.1998 21 6 1.3261 0.9962 7.0209 22 6 1.8900 0.0168 6.2614 23 6 2.6273 -1.1158 6.8575 24 8 3.6845 -1.5133 6.4064 25 7 2.0430 -1.6819 7.9442 26 6 0.6553 -1.3719 8.2448 27 6 0.4724 -0.1033 9.0786 28 6 1.3759 1.0085 8.5252 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.1483 0.8590 -2.3518 35 1 0.6929 1.9144 -5.4832 36 1 3.1264 -0.7993 1.2056 37 1 1.6055 -1.7197 1.2953 38 1 1.1489 0.8595 2.3518 39 1 0.5250 2.0610 4.0639 40 1 2.5456 -2.2856 8.5133 41 1 0.2212 -2.2110 8.7883 42 1 0.1165 -1.2511 7.3050 43 1 0.7413 -0.3079 10.1150 44 1 -0.5685 0.2165 9.0297 45 1 1.0290 1.9745 8.8921 46 1 2.4010 0.8415 8.8559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753624613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:50 Heat of formation + Delta-G solvation = -80.252124 kcal Electronic energy + Delta-G solvation = -28438.706854 eV Core-core repulsion = 24328.773127 eV Total energy + Delta-G solvation = -4109.933727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.96917 -40.66554 -40.50670 -38.23062 -37.62135 -35.99882 -34.42862 -33.85116 -33.67005 -31.95247 -30.88027 -27.93804 -27.39817 -26.93802 -25.39663 -24.69419 -23.74541 -22.36274 -21.60514 -20.76554 -20.69582 -19.20076 -18.42627 -18.37425 -17.69995 -17.44129 -17.20152 -16.62386 -16.52103 -16.39414 -16.11769 -15.59605 -15.48174 -15.42196 -15.14129 -15.07028 -14.63678 -14.31590 -14.16197 -14.04730 -13.77019 -13.61441 -13.55651 -12.96678 -12.80404 -12.69071 -12.46199 -12.20816 -12.17059 -12.00374 -11.81131 -11.73342 -11.66728 -11.28145 -11.17519 -10.98927 -10.94931 -10.18324 -10.12301 -9.68925 -8.99768 -7.96034 -5.24079 0.21478 0.30144 1.47367 1.48602 1.53698 1.57224 1.67370 2.02313 2.21168 2.41295 2.56202 3.36632 3.37490 3.42136 3.65141 3.70138 3.87174 3.94559 3.95108 4.05021 4.16151 4.19338 4.32049 4.40588 4.47186 4.53212 4.64559 4.68123 4.77273 4.80389 4.87424 4.93683 4.98909 5.04673 5.10596 5.12018 5.20063 5.28341 5.37844 5.48123 5.49814 5.74278 5.97198 6.07769 6.26980 6.48886 7.15178 7.19101 7.33936 8.08352 8.33846 9.27269 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.001942 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.704713 B =14413.408296 C =14975.765817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.083 0.917 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.273 1.273 14 C 0.140 3.860 15 N -0.704 5.704 16 C 0.574 3.426 17 O -0.571 6.571 18 C -0.222 4.222 19 C 0.053 3.947 20 O -0.149 6.149 21 C 0.059 3.941 22 C -0.235 4.235 23 C 0.583 3.417 24 O -0.561 6.561 25 N -0.717 5.717 26 C 0.097 3.903 27 C -0.124 4.124 28 C -0.047 4.047 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.263 0.737 40 H 0.411 0.589 41 H 0.113 0.887 42 H 0.055 0.945 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 2.761 35.605 36.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.101 0.899 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.379 4.379 7 H 0.089 0.911 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.198 1.198 14 C 0.016 3.984 15 N -0.357 5.357 16 C 0.362 3.638 17 O -0.451 6.451 18 C -0.227 4.227 19 C -0.016 4.016 20 O -0.042 6.042 21 C 0.007 3.993 22 C -0.240 4.240 23 C 0.370 3.630 24 O -0.439 6.439 25 N -0.371 5.371 26 C -0.027 4.027 27 C -0.162 4.162 28 C -0.084 4.084 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.279 0.721 40 H 0.249 0.751 41 H 0.131 0.869 42 H 0.074 0.926 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.139 0.861 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.538 2.049 35.310 35.969 hybrid contribution 0.510 -0.265 -1.571 1.673 sum -6.028 1.784 33.739 34.320 Atomic orbital electron populations 1.21738 0.93443 1.02000 1.02076 1.21322 0.97471 1.00100 0.92212 0.89886 1.20719 0.96436 0.94203 0.85808 1.42475 1.66781 1.27843 1.01214 1.19614 1.27892 1.05322 0.85110 0.91052 1.25532 1.01713 0.97909 1.01447 1.69795 1.44990 1.17766 1.29112 0.85154 0.77974 0.76842 0.79868 1.21336 1.21959 1.19808 1.21138 0.99395 0.95091 0.82822 1.45618 1.57558 1.28130 1.04393 1.17585 0.78816 0.84298 0.83059 1.90864 1.41095 1.26123 1.87016 1.20819 1.09395 1.00145 0.92353 1.25320 0.97243 0.93837 0.85223 1.83633 1.60143 1.44238 1.16163 1.23218 0.93824 0.87356 0.94942 1.21043 1.08820 1.01175 0.92930 1.18062 0.83510 0.81377 0.80004 1.90850 1.25475 1.64712 1.62874 1.45687 1.14783 1.48859 1.27751 1.21479 0.80267 1.00222 1.00750 1.22271 1.01317 0.91697 1.00942 1.20607 1.03213 1.03673 0.80877 0.93587 0.93141 0.90062 0.96544 0.96151 0.78923 0.93913 0.92629 0.91888 0.74732 0.72102 0.75129 0.86931 0.92604 0.87189 0.87622 0.86143 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.94 71.99 0.64 -3.07 16 2 C -0.09 -2.77 2.46 -10.79 -0.03 -2.80 16 3 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.16 6.30 5.65 86.38 0.49 6.79 16 5 N -0.74 -37.54 5.33 -343.45 -1.83 -39.37 16 6 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 9 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 10 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 14 C 0.14 4.02 5.06 86.38 0.44 4.46 16 15 N -0.70 -16.65 5.28 -466.51 -2.46 -19.12 16 16 C 0.57 17.23 7.81 86.63 0.68 17.91 16 17 O -0.57 -23.63 15.77 4.51 0.07 -23.56 16 18 C -0.22 -5.11 6.32 -19.20 -0.12 -5.24 16 19 C 0.05 0.66 11.61 67.43 0.78 1.45 16 20 O -0.15 -1.82 10.48 7.91 0.08 -1.74 16 21 C 0.06 0.82 6.35 25.14 0.16 0.98 16 22 C -0.23 -5.39 4.99 -19.18 -0.10 -5.49 16 23 C 0.58 15.86 7.29 86.59 0.63 16.49 16 24 O -0.56 -21.90 17.12 4.50 0.08 -21.82 16 25 N -0.72 -11.13 5.26 -467.35 -2.46 -13.59 16 26 C 0.10 0.73 6.00 86.56 0.52 1.25 16 27 C -0.12 -0.17 6.32 30.76 0.19 0.02 16 28 C -0.05 -0.26 5.65 29.99 0.17 -0.09 16 29 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 1.57 7.18 -2.39 -0.02 1.55 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.38 19.85 6.85 -92.71 -0.63 19.21 16 35 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.41 6.41 6.66 -92.71 -0.62 5.79 16 39 H 0.26 0.65 7.49 -2.91 -0.02 0.63 16 40 H 0.41 5.05 8.95 -92.71 -0.83 4.22 16 41 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.06 0.66 6.93 -2.39 -0.02 0.64 16 43 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.09 0.65 8.04 -2.39 -0.02 0.63 16 Total: -1.00 -90.75 379.97 0.51 -90.24 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.04 Total: 23.01 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.77 Total: 15.67 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -6.47 Total: -130.45 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: 0.23 Total: -47.12 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -90.75 0.51 -90.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.987 kcal (2) G-P(sol) polarization free energy of solvation -90.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds