Wall clock time and date at job start Sat Apr 11 2020 04:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46986 * 2 1 4 4 C 1.46492 * 120.00145 * 269.99710 * 3 2 1 5 5 C 1.50697 * 109.47708 * 270.00290 * 4 3 2 6 6 H 1.08001 * 119.99248 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00130 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47514 * 89.99609 * 9 7 5 11 11 H 1.48495 * 109.47286 * 209.99999 * 9 7 5 12 12 H 1.48503 * 109.46820 * 329.99514 * 9 7 5 13 13 C 1.34781 * 119.99820 * 90.00519 * 3 2 1 14 14 O 1.21279 * 119.99842 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99917 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46614 * 180.02562 * 15 13 3 17 17 C 1.46902 * 111.00478 * 66.04904 * 16 15 13 18 18 C 1.46909 * 110.99893 * 189.99996 * 16 15 13 19 19 C 1.50692 * 109.47405 * 164.92873 * 18 16 15 20 20 C 1.38256 * 119.99908 * 106.40930 * 19 18 16 21 21 C 1.38216 * 120.00121 * 180.28217 * 20 19 18 22 22 C 1.38258 * 119.99584 * 359.48732 * 21 20 19 23 23 C 1.38209 * 120.00194 * 0.49060 * 22 21 20 24 24 C 1.38216 * 120.00358 * 286.43701 * 19 18 16 25 25 N 1.48020 * 119.99611 * 359.96901 * 24 19 18 26 26 O 1.21800 * 119.99807 * 174.19431 * 25 24 19 27 27 O 1.21795 * 120.00189 * 354.20378 * 25 24 19 28 28 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46952 * 299.99925 * 1 2 3 30 30 H 1.09001 * 109.47538 * 59.99641 * 1 2 3 31 31 H 1.09000 * 109.46952 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.47246 * 119.99926 * 2 1 3 33 33 H 1.09005 * 109.46929 * 30.00631 * 4 3 2 34 34 H 1.09003 * 109.47242 * 149.99864 * 4 3 2 35 35 H 0.96993 * 120.00372 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47266 * 60.00368 * 15 13 3 37 37 H 1.09004 * 109.46946 * 299.99939 * 15 13 3 38 38 H 1.09003 * 109.47244 * 190.78881 * 17 16 15 39 39 H 1.09006 * 109.46646 * 310.78817 * 17 16 15 40 40 H 1.08999 * 109.46794 * 70.78607 * 17 16 15 41 41 H 1.09008 * 109.46717 * 44.92882 * 18 16 15 42 42 H 1.09002 * 109.46899 * 284.93738 * 18 16 15 43 43 H 1.07999 * 120.00033 * 359.97438 * 20 19 18 44 44 H 1.08001 * 120.00140 * 179.72831 * 21 20 19 45 45 H 1.08002 * 119.99712 * 180.26370 * 22 21 20 46 46 H 1.07999 * 120.00123 * 179.76969 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9134 2.0965 -3.4170 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1992 12 1 6.7735 1.9157 -2.2201 13 6 2.2430 2.0166 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.3092 2.2064 3.5889 17 6 1.3827 3.3457 3.6268 18 6 2.3052 1.4818 4.8668 19 6 2.9824 2.3189 5.9211 20 6 2.2293 2.9382 6.9013 21 6 2.8499 3.7107 7.8648 22 6 4.2248 3.8556 7.8547 23 6 4.9777 3.2362 6.8751 24 6 4.3564 2.4682 5.9078 25 7 5.1628 1.8052 4.8584 26 8 6.3591 2.0208 4.7825 27 8 4.6299 1.0441 4.0708 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6756 3.5178 -4.4430 36 1 2.6213 0.4186 2.5302 37 1 0.9433 1.0125 2.5299 38 1 1.7501 4.0895 4.3339 39 1 1.3135 3.7909 2.6343 40 1 0.3970 3.0020 3.9404 41 1 2.8407 0.5394 4.7518 42 1 1.2768 1.2810 5.1674 43 1 1.1556 2.8223 6.9112 44 1 2.2611 4.1980 8.6280 45 1 4.7101 4.4558 8.6101 46 1 6.0514 3.3524 6.8649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052589708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:20:43 Heat of formation + Delta-G solvation = 11.820874 kcal Electronic energy + Delta-G solvation = -29895.128194 eV Core-core repulsion = 25789.187051 eV Total energy + Delta-G solvation = -4105.941143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04032 -39.85141 -39.12086 -36.94724 -36.12083 -35.06777 -32.75642 -32.35803 -32.02171 -30.01768 -28.60615 -27.59680 -26.57055 -26.02740 -23.53868 -22.92288 -22.79751 -22.09566 -21.30451 -18.98288 -18.34760 -18.23778 -17.29016 -16.80120 -16.38732 -16.19106 -16.04166 -15.61117 -15.18842 -15.02450 -14.71635 -14.30152 -14.07988 -13.79222 -13.31676 -13.28573 -13.16199 -12.73576 -12.54018 -12.43239 -12.12697 -11.90939 -11.85406 -11.61804 -11.46997 -11.23684 -11.13638 -11.08029 -10.81327 -10.80112 -10.63822 -10.53910 -10.41713 -10.01333 -9.83605 -9.51600 -9.49575 -8.80228 -8.33249 -8.17041 -7.52945 -5.94239 -3.97883 -0.15120 0.62143 1.38624 1.58697 2.98556 3.39363 3.45751 3.51262 3.58616 3.73646 4.09835 4.10781 4.28604 4.41033 4.56404 4.61387 4.64757 4.89267 5.02908 5.16527 5.21694 5.33229 5.37386 5.40285 5.43670 5.52548 5.55100 5.64501 5.69252 5.72916 5.75435 5.81456 5.86062 6.03757 6.09085 6.23442 6.30317 6.52927 6.61929 6.92747 7.10249 7.21552 7.54141 7.68051 7.89010 8.03570 8.35126 8.55338 9.03189 9.25578 9.67398 11.13810 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003426 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.589879 B = 8171.956465 C = 9312.965557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.510 3.490 14 O -0.526 6.526 15 C 0.043 3.957 16 N -0.510 5.510 17 C 0.020 3.980 18 C 0.078 3.922 19 C -0.008 4.008 20 C -0.117 4.117 21 C -0.072 4.072 22 C -0.123 4.123 23 C -0.059 4.059 24 C -0.021 4.021 25 N 0.032 4.968 26 O -0.185 6.185 27 O -0.119 6.119 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.019 0.981 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -3.978 25.206 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.130 3.870 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.296 3.704 14 O -0.402 6.402 15 C -0.087 4.087 16 N -0.234 5.234 17 C -0.128 4.128 18 C -0.050 4.050 19 C -0.010 4.010 20 C -0.136 4.136 21 C -0.090 4.090 22 C -0.141 4.141 23 C -0.078 4.078 24 C -0.104 4.104 25 N 0.553 4.447 26 O -0.393 6.393 27 O -0.344 6.344 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.037 0.963 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.318 -2.713 25.448 26.360 hybrid contribution 0.384 -0.559 -0.525 0.858 sum -5.933 -3.272 24.923 25.827 Atomic orbital electron populations 1.22223 0.97056 1.01266 1.02102 1.21401 0.93225 0.84426 1.02769 1.48237 1.64127 1.13206 1.07648 1.19218 0.96206 0.93489 0.78110 1.21482 0.96982 1.31528 1.06061 0.92292 1.24924 0.97797 0.94969 0.96453 1.69935 1.35678 1.33758 1.14394 0.86518 0.84922 0.77534 0.78652 1.20707 1.21220 1.19664 1.20068 0.78643 0.87048 0.84683 1.90635 1.44771 1.18049 1.86792 1.22055 1.00125 0.96359 0.90183 1.61416 1.52456 1.09003 1.00531 1.22604 0.92049 0.93462 1.04711 1.21408 0.98797 0.97034 0.87748 1.19801 0.90614 0.95093 0.95525 1.21162 1.00605 0.97528 0.94341 1.21553 0.94892 0.95290 0.97308 1.21183 0.93927 1.00258 0.98767 1.21096 1.02263 0.92691 0.91751 1.20965 0.91416 1.04498 0.93526 1.43386 1.00987 0.99635 1.00680 1.94531 0.97837 1.68352 1.78546 1.94501 1.73795 1.30642 1.35439 0.92248 0.93359 0.92099 0.89947 0.91698 0.95196 0.94102 0.92880 0.87578 0.92739 0.92268 0.88878 0.96269 0.87099 0.93299 0.83980 0.84218 0.83842 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.93 2.46 -175.06 -0.43 -13.36 16 4 C 0.25 6.66 5.16 -5.20 -0.03 6.63 16 5 C -0.52 -15.33 9.39 -34.44 -0.32 -15.66 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 9 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.51 10.91 7.30 -10.98 -0.08 10.83 16 14 O -0.53 -13.65 13.98 5.56 0.08 -13.58 16 15 C 0.04 0.68 3.75 -4.97 -0.02 0.66 16 16 N -0.51 -7.76 3.47 -245.81 -0.85 -8.61 16 17 C 0.02 0.28 9.02 60.07 0.54 0.82 16 18 C 0.08 0.89 4.13 -4.97 -0.02 0.87 16 19 C -0.01 -0.09 4.64 -104.63 -0.49 -0.58 16 20 C -0.12 -0.88 9.53 -39.58 -0.38 -1.26 16 21 C -0.07 -0.43 10.05 -39.58 -0.40 -0.83 16 22 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 23 C -0.06 -0.58 9.56 -39.59 -0.38 -0.96 16 24 C -0.02 -0.26 6.83 -79.95 -0.55 -0.81 16 25 N 0.03 0.53 4.45 33.96 0.15 0.68 16 26 O -0.18 -3.26 18.46 -29.46 -0.54 -3.80 16 27 O -0.12 -2.07 14.03 -29.46 -0.41 -2.48 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.40 8.07 -51.93 -0.42 0.99 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.11 1.57 6.73 -51.93 -0.35 1.22 16 37 H 0.05 0.71 7.16 -51.93 -0.37 0.33 16 38 H 0.06 0.81 7.54 -51.93 -0.39 0.42 16 39 H 0.09 1.67 5.78 -51.93 -0.30 1.37 16 40 H 0.02 0.22 7.98 -51.93 -0.41 -0.19 16 41 H 0.11 1.29 5.88 -51.92 -0.31 0.99 16 42 H 0.05 0.43 7.75 -51.93 -0.40 0.03 16 43 H 0.14 0.75 7.99 -52.49 -0.42 0.33 16 44 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.15 1.35 7.62 -52.49 -0.40 0.95 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -37.06 382.21 -9.31 -46.37 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.52 Total: -2.12 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.25 Total: 0.02 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.40 Total: -47.98 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.88 Total: -19.86 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.06 -9.31 -46.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052589708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.195 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds