Wall clock time and date at job start Sat Apr 11 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.36939 * 119.99910 * 275.30289 * 3 2 1 5 5 H 1.08003 * 119.99415 * 37.58260 * 4 3 2 6 6 C 1.38804 * 120.00356 * 217.57980 * 4 3 2 7 7 N 1.31619 * 119.99873 * 21.42785 * 6 4 3 8 8 Si 1.86803 * 120.00156 * 201.42066 * 6 4 3 9 9 H 1.48497 * 109.46891 * 60.00383 * 8 6 4 10 10 H 1.48504 * 109.47158 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47462 * 300.00268 * 8 6 4 12 12 C 1.46495 * 120.00650 * 95.30576 * 3 2 1 13 13 C 1.53001 * 109.47191 * 270.00366 * 12 3 2 14 14 N 1.46505 * 109.47284 * 180.02562 * 13 12 3 15 15 C 1.34769 * 120.00106 * 179.97438 * 14 13 12 16 16 O 1.21594 * 120.00137 * 359.97438 * 15 14 13 17 17 C 1.47526 * 120.00047 * 179.97438 * 15 14 13 18 18 C 1.39849 * 120.71211 * 0.02562 * 17 15 14 19 19 C 1.38614 * 118.64161 * 180.02562 * 18 17 15 20 20 C 1.38102 * 119.53600 * 359.84177 * 19 18 17 21 21 N 1.32437 * 120.62626 * 0.26039 * 20 19 18 22 22 C 1.31996 * 122.29091 * 359.81913 * 21 20 19 23 23 O 1.35429 * 119.83690 * 179.97438 * 22 21 20 24 24 C 1.50916 * 121.02925 * 180.30943 * 20 19 18 25 25 C 1.52923 * 109.78828 * 342.94533 * 24 20 19 26 26 O 1.43218 * 108.53047 * 49.45572 * 25 24 20 27 27 C 1.42737 * 113.05397 * 289.21115 * 26 25 24 28 28 H 1.08992 * 109.47579 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47284 * 300.00746 * 1 2 3 30 30 H 1.09004 * 109.46767 * 59.99984 * 1 2 3 31 31 H 1.08991 * 109.46980 * 239.99364 * 2 1 3 32 32 H 1.09008 * 109.46696 * 119.99521 * 2 1 3 33 33 H 0.97002 * 119.99730 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47632 * 149.99818 * 12 3 2 35 35 H 1.09006 * 109.47159 * 29.99502 * 12 3 2 36 36 H 1.08997 * 109.47630 * 59.99631 * 13 12 3 37 37 H 1.09004 * 109.46704 * 299.99210 * 13 12 3 38 38 H 0.97005 * 119.99372 * 359.97438 * 14 13 12 39 39 H 1.08009 * 120.68171 * 0.02562 * 18 17 15 40 40 H 0.96696 * 113.99790 * 269.99767 * 23 22 21 41 41 H 1.08994 * 109.42512 * 222.84210 * 24 20 19 42 42 H 1.09004 * 109.41778 * 103.03649 * 24 20 19 43 43 H 1.08998 * 109.62902 * 289.74720 * 25 24 20 44 44 H 1.09005 * 109.78952 * 169.26491 * 25 24 20 45 45 H 1.09002 * 109.34319 * 171.82254 * 27 26 25 46 46 H 1.08999 * 109.33824 * 291.34386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1433 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3027 2.7978 -0.6490 8 14 3.0997 4.2791 -2.6588 9 1 1.9631 5.1783 -2.3348 10 1 4.3626 5.0603 -2.6671 11 1 2.8848 3.6720 -3.9969 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7383 1.8364 14 7 1.4975 3.3905 3.0993 15 6 0.5652 4.0781 3.7880 16 8 -0.5705 4.1576 3.3609 17 6 0.9225 4.7344 5.0600 18 6 2.2242 4.6530 5.5647 19 6 2.5126 5.2853 6.7640 20 6 1.5173 5.9777 7.4251 21 7 0.2918 6.0379 6.9265 22 6 -0.0365 5.4527 5.7898 23 8 -1.3054 5.5458 5.3259 24 6 1.7956 6.6843 8.7293 25 6 3.0978 6.1590 9.3350 26 8 4.1117 6.1812 8.3238 27 6 3.9126 5.1954 7.3109 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.0490 3.4029 -0.7830 34 1 3.1617 2.7641 1.0859 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0070 2.0138 37 1 0.7903 3.4877 1.1274 38 1 2.4036 3.3274 3.4398 39 1 2.9893 4.1085 5.0309 40 1 -1.8888 4.8378 5.6316 41 1 0.9743 6.5026 9.4225 42 1 1.8861 7.7555 8.5490 43 1 2.9526 5.1371 9.6854 44 1 3.3988 6.7927 10.1693 45 1 4.6267 5.3580 6.5035 46 1 4.0712 4.2042 7.7357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663443474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:23:48 Heat of formation + Delta-G solvation = -63.886367 kcal Electronic energy + Delta-G solvation = -28947.700129 eV Core-core repulsion = 24838.476074 eV Total energy + Delta-G solvation = -4109.224055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.34971 -39.47821 -38.44560 -36.92541 -36.31681 -34.33616 -33.70402 -32.03310 -31.92598 -31.00714 -29.51097 -27.55725 -25.88166 -25.31506 -24.24577 -23.17895 -22.40266 -21.45345 -20.46944 -20.05918 -18.77189 -17.70771 -17.65685 -16.75406 -16.47126 -16.31607 -15.54428 -15.36028 -15.16487 -14.98702 -14.75954 -14.34808 -14.12218 -13.94521 -13.81631 -13.64449 -13.39725 -13.06765 -12.73118 -12.43614 -12.41715 -12.15113 -11.99077 -11.78435 -11.56593 -11.36850 -11.15445 -10.77799 -10.69878 -10.57092 -10.51008 -10.13239 -10.07108 -9.95268 -9.91897 -9.82270 -9.44767 -8.98153 -8.62113 -8.49549 -6.67185 -5.88088 -3.46670 0.33945 0.75211 2.77199 3.17632 3.31050 3.36035 3.39879 3.44469 3.47397 3.61978 4.06254 4.13246 4.27118 4.43271 4.54740 4.65843 4.72032 4.93647 4.96393 5.05263 5.20191 5.22985 5.25507 5.27405 5.47515 5.50540 5.51113 5.75325 5.94169 6.02616 6.09071 6.10863 6.34170 6.36848 6.44894 6.60684 6.63804 6.76610 6.87621 6.95558 7.12398 7.34379 7.46887 7.58103 7.76513 7.79511 8.42345 8.45570 9.10233 9.72040 10.29723 11.12200 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.002824 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.275038 B = 9913.432494 C =10595.921607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.714 5.714 15 C 0.554 3.446 16 O -0.524 6.524 17 C -0.197 4.197 18 C -0.020 4.020 19 C -0.192 4.192 20 C 0.182 3.818 21 N -0.510 5.510 22 C 0.375 3.625 23 O -0.457 6.457 24 C -0.106 4.106 25 C 0.059 3.941 26 O -0.371 6.371 27 C 0.108 3.892 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.256 0.744 34 H 0.099 0.901 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.394 0.606 39 H 0.148 0.852 40 H 0.405 0.595 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 2.609 21.306 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.365 5.365 15 C 0.339 3.661 16 O -0.401 6.401 17 C -0.204 4.204 18 C -0.047 4.047 19 C -0.195 4.195 20 C 0.045 3.955 21 N -0.229 5.229 22 C 0.193 3.807 23 O -0.264 6.264 24 C -0.143 4.143 25 C -0.019 4.019 26 O -0.289 6.289 27 C 0.031 3.969 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.228 0.772 39 H 0.166 0.834 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.146 3.764 21.034 21.476 hybrid contribution 0.374 -0.214 -0.885 0.984 sum -1.772 3.550 20.149 20.536 Atomic orbital electron populations 1.22392 0.99893 0.99101 1.01418 1.20881 0.91773 0.86929 0.98910 1.43596 1.76049 1.08287 1.02036 1.18980 1.04815 1.21392 0.93971 0.92084 1.25176 0.94126 1.01159 0.98145 1.69981 1.03135 1.37315 1.42548 0.86468 0.77036 0.82294 0.81620 1.20736 1.21539 1.20576 1.21056 0.94514 0.96932 0.86502 1.22539 1.01259 0.96581 0.82358 1.46060 1.12779 1.52954 1.24708 1.17773 0.85702 0.79260 0.83371 1.90808 1.19871 1.60430 1.69003 1.21280 0.95524 1.04085 0.99487 1.21612 0.95283 0.94376 0.93388 1.21039 0.98647 1.02559 0.97218 1.20812 0.86797 0.92583 0.95333 1.67081 1.21169 1.21321 1.13306 1.19051 0.86572 0.88406 0.86629 1.84739 1.17353 1.53506 1.70842 1.21163 0.99375 1.01097 0.92716 1.22698 0.86777 1.01544 0.90841 1.88127 1.48078 1.56685 1.36007 1.21392 0.91561 0.92606 0.91352 0.94431 0.93699 0.93063 0.93524 0.94754 0.93449 0.88383 0.95313 0.92758 0.91498 0.77169 0.83397 0.73554 0.88236 0.88323 0.92196 0.87465 0.86947 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.21 37.16 0.38 -2.68 16 2 C 0.14 2.89 6.44 -4.05 -0.03 2.86 16 3 N -0.58 -13.78 2.43 -173.25 -0.42 -14.20 16 4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.09 16 5 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.30 11.47 55.49 0.64 -23.67 16 8 Si 0.90 21.31 29.60 -169.99 -5.03 16.28 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 13 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 14 N -0.71 -11.66 5.51 -61.35 -0.34 -12.00 16 15 C 0.55 9.44 7.77 -12.48 -0.10 9.34 16 16 O -0.52 -10.70 15.21 -16.41 -0.25 -10.95 16 17 C -0.20 -2.77 5.90 -104.74 -0.62 -3.39 16 18 C -0.02 -0.22 9.27 -38.84 -0.36 -0.58 16 19 C -0.19 -1.93 5.80 -104.60 -0.61 -2.54 16 20 C 0.18 2.00 6.68 -82.28 -0.55 1.45 16 21 N -0.51 -6.79 10.23 -9.14 -0.09 -6.88 16 22 C 0.37 5.42 7.77 -16.71 -0.13 5.29 16 23 O -0.46 -6.68 11.68 -39.67 -0.46 -7.14 16 24 C -0.11 -0.80 6.23 -27.82 -0.17 -0.97 16 25 C 0.06 0.36 6.84 37.12 0.25 0.61 16 26 O -0.37 -3.22 10.81 -35.23 -0.38 -3.60 16 27 C 0.11 0.83 6.65 35.94 0.24 1.07 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.03 0.65 7.83 -51.92 -0.41 0.24 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.10 2.37 5.52 -51.93 -0.29 2.09 16 35 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 36 H 0.05 1.09 6.64 -51.93 -0.34 0.74 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.39 5.29 6.58 -40.82 -0.27 5.02 16 39 H 0.15 1.24 6.51 -52.48 -0.34 0.89 16 40 H 0.40 4.11 9.06 45.56 0.41 4.52 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -33.66 377.85 -8.37 -42.04 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.76 Total: 5.92 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.96 Total: 8.52 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.22 Total: -56.75 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.09 Total: -21.69 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.66 -8.37 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663443474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.849 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds