Wall clock time and date at job start Sat Apr 11 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.36939 * 119.99910 * 275.30289 * 3 2 1 5 5 H 1.08003 * 119.99415 * 37.58260 * 4 3 2 6 6 C 1.38804 * 120.00356 * 217.57980 * 4 3 2 7 7 N 1.31619 * 119.99873 * 21.42785 * 6 4 3 8 8 Si 1.86803 * 120.00156 * 201.42066 * 6 4 3 9 9 H 1.48497 * 109.46891 * 60.00383 * 8 6 4 10 10 H 1.48504 * 109.47158 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47462 * 300.00268 * 8 6 4 12 12 C 1.46495 * 120.00650 * 95.30576 * 3 2 1 13 13 C 1.53001 * 109.47191 * 270.00366 * 12 3 2 14 14 N 1.46505 * 109.47284 * 180.02562 * 13 12 3 15 15 C 1.34769 * 120.00106 * 179.97438 * 14 13 12 16 16 O 1.21594 * 120.00137 * 359.97438 * 15 14 13 17 17 C 1.47526 * 120.00047 * 179.97438 * 15 14 13 18 18 C 1.39849 * 120.71211 * 0.02562 * 17 15 14 19 19 C 1.38614 * 118.64161 * 180.02562 * 18 17 15 20 20 C 1.38102 * 119.53600 * 359.84177 * 19 18 17 21 21 N 1.32437 * 120.62626 * 0.26039 * 20 19 18 22 22 C 1.31996 * 122.29091 * 359.81913 * 21 20 19 23 23 O 1.35429 * 119.83690 * 179.97438 * 22 21 20 24 24 C 1.50916 * 121.02925 * 180.30943 * 20 19 18 25 25 C 1.52923 * 109.78828 * 342.94533 * 24 20 19 26 26 O 1.43218 * 108.53047 * 49.45572 * 25 24 20 27 27 C 1.42737 * 113.05397 * 289.21115 * 26 25 24 28 28 H 1.08992 * 109.47579 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47284 * 300.00746 * 1 2 3 30 30 H 1.09004 * 109.46767 * 59.99984 * 1 2 3 31 31 H 1.08991 * 109.46980 * 239.99364 * 2 1 3 32 32 H 1.09008 * 109.46696 * 119.99521 * 2 1 3 33 33 H 0.97002 * 119.99730 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47632 * 149.99818 * 12 3 2 35 35 H 1.09006 * 109.47159 * 29.99502 * 12 3 2 36 36 H 1.08997 * 109.47630 * 59.99631 * 13 12 3 37 37 H 1.09004 * 109.46704 * 299.99210 * 13 12 3 38 38 H 0.97005 * 119.99372 * 359.97438 * 14 13 12 39 39 H 1.08009 * 120.68171 * 0.02562 * 18 17 15 40 40 H 0.96696 * 113.99790 * 269.99767 * 23 22 21 41 41 H 1.08994 * 109.42512 * 222.84210 * 24 20 19 42 42 H 1.09004 * 109.41778 * 103.03649 * 24 20 19 43 43 H 1.08998 * 109.62902 * 289.74720 * 25 24 20 44 44 H 1.09005 * 109.78952 * 169.26491 * 25 24 20 45 45 H 1.09002 * 109.34319 * 171.82254 * 27 26 25 46 46 H 1.08999 * 109.33824 * 291.34386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1433 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3027 2.7978 -0.6490 8 14 3.0997 4.2791 -2.6588 9 1 1.9631 5.1783 -2.3348 10 1 4.3626 5.0603 -2.6671 11 1 2.8848 3.6720 -3.9969 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7383 1.8364 14 7 1.4975 3.3905 3.0993 15 6 0.5652 4.0781 3.7880 16 8 -0.5705 4.1576 3.3609 17 6 0.9225 4.7344 5.0600 18 6 2.2242 4.6530 5.5647 19 6 2.5126 5.2853 6.7640 20 6 1.5173 5.9777 7.4251 21 7 0.2918 6.0379 6.9265 22 6 -0.0365 5.4527 5.7898 23 8 -1.3054 5.5458 5.3259 24 6 1.7956 6.6843 8.7293 25 6 3.0978 6.1590 9.3350 26 8 4.1117 6.1812 8.3238 27 6 3.9126 5.1954 7.3109 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.0490 3.4029 -0.7830 34 1 3.1617 2.7641 1.0859 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0070 2.0138 37 1 0.7903 3.4877 1.1274 38 1 2.4036 3.3274 3.4398 39 1 2.9893 4.1085 5.0309 40 1 -1.8888 4.8378 5.6316 41 1 0.9743 6.5026 9.4225 42 1 1.8861 7.7555 8.5490 43 1 2.9526 5.1371 9.6854 44 1 3.3988 6.7927 10.1693 45 1 4.6267 5.3580 6.5035 46 1 4.0712 4.2042 7.7357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663443474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:23:46 Heat of formation + Delta-G solvation = -89.593224 kcal Electronic energy + Delta-G solvation = -28948.814862 eV Core-core repulsion = 24838.476074 eV Total energy + Delta-G solvation = -4110.338788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.27749 -40.58688 -39.44282 -38.08606 -37.81403 -35.75193 -34.67994 -33.83438 -32.82955 -31.97019 -31.00422 -29.22111 -26.64687 -26.44777 -25.78888 -24.11250 -23.60176 -22.67391 -22.14158 -21.33507 -19.80219 -18.93451 -18.55193 -18.33299 -17.34975 -17.23435 -17.01798 -16.68412 -16.36702 -16.04955 -15.87324 -15.67327 -15.50713 -15.25366 -14.85867 -14.84042 -14.39064 -14.30434 -14.10038 -13.79392 -13.76630 -13.25178 -13.14267 -13.01755 -12.90195 -12.64336 -12.63307 -12.41944 -12.31215 -12.04526 -11.91373 -11.69956 -11.55832 -11.40650 -11.05306 -10.72343 -10.57006 -10.54175 -10.13875 -9.79002 -8.60368 -7.87334 -5.49436 -0.64046 -0.13854 1.43076 1.47132 1.52759 1.65314 1.99087 2.29797 2.48490 2.55121 2.89866 3.19748 3.24707 3.35142 3.50913 3.61098 3.79981 3.94582 4.11477 4.14538 4.29307 4.31136 4.38997 4.42634 4.47084 4.55954 4.60131 4.71203 4.73835 4.80232 4.82033 4.84710 4.92513 5.05232 5.08509 5.20080 5.26537 5.29135 5.34070 5.56423 5.65168 5.73298 6.08912 6.38413 6.44252 6.50942 6.67055 7.10501 7.16170 7.82171 8.33670 9.08432 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.002824 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.275038 B = 9913.432494 C =10595.921607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.272 4.272 5 H 0.051 0.949 6 C -0.025 4.025 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.145 3.855 13 C 0.120 3.880 14 N -0.705 5.705 15 C 0.556 3.444 16 O -0.565 6.565 17 C -0.217 4.217 18 C -0.011 4.011 19 C -0.186 4.186 20 C 0.175 3.825 21 N -0.526 5.526 22 C 0.359 3.641 23 O -0.478 6.478 24 C -0.105 4.105 25 C 0.058 3.942 26 O -0.387 6.387 27 C 0.107 3.893 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.410 0.590 39 H 0.174 0.826 40 H 0.417 0.583 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 2.295 23.386 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.224 4.224 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.357 5.357 15 C 0.343 3.657 16 O -0.445 6.445 17 C -0.224 4.224 18 C -0.037 4.037 19 C -0.189 4.189 20 C 0.038 3.962 21 N -0.246 5.246 22 C 0.178 3.822 23 O -0.287 6.287 24 C -0.143 4.143 25 C -0.018 4.018 26 O -0.306 6.306 27 C 0.030 3.970 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.247 0.753 39 H 0.191 0.809 40 H 0.279 0.721 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.149 0.851 45 H 0.142 0.858 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.880 3.429 23.142 23.411 hybrid contribution -0.018 -0.123 -1.415 1.421 sum -0.898 3.307 21.726 21.995 Atomic orbital electron populations 1.22227 0.98085 1.00855 1.00360 1.21014 0.93079 0.85359 0.99392 1.43839 1.76376 1.09661 1.01951 1.19107 1.04386 1.21903 0.94797 0.93183 1.25699 0.94066 1.02667 0.99948 1.70058 1.03417 1.37858 1.43705 0.85673 0.76526 0.80117 0.80119 1.21574 1.21271 1.20029 1.20936 0.94183 0.96850 0.86255 1.22007 1.00312 0.95324 0.82947 1.45820 1.13682 1.52676 1.23510 1.18175 0.84983 0.78533 0.84023 1.90778 1.21589 1.61882 1.70279 1.21003 0.97125 1.05682 0.98568 1.21879 0.94348 0.93851 0.93594 1.21380 0.99835 1.01180 0.96472 1.21534 0.86207 0.92096 0.96337 1.67147 1.22597 1.21748 1.13065 1.19211 0.86505 0.89142 0.87331 1.84682 1.18095 1.54476 1.71478 1.21314 1.00884 1.00730 0.91332 1.22899 0.85328 1.02915 0.90673 1.88117 1.48816 1.57120 1.36523 1.21578 0.89827 0.93750 0.91824 0.91223 0.94005 0.94814 0.94473 0.92754 0.93630 0.90763 0.93209 0.92895 0.95340 0.75272 0.80853 0.72099 0.86923 0.88242 0.90797 0.85107 0.85800 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 10.21 71.98 0.73 -4.75 16 2 C 0.14 5.47 6.44 86.38 0.56 6.02 16 3 N -0.60 -28.40 2.43 -702.03 -1.71 -30.11 16 4 C -0.27 -14.56 9.45 84.03 0.79 -13.77 16 5 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 6 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 7 N -0.91 -49.79 11.47 21.65 0.25 -49.54 16 8 Si 0.95 44.22 29.60 68.60 2.03 46.25 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.20 5.45 86.38 0.47 6.67 16 13 C 0.12 4.81 6.00 86.38 0.52 5.33 16 14 N -0.70 -22.82 5.51 -466.27 -2.57 -25.39 16 15 C 0.56 19.15 7.77 86.69 0.67 19.82 16 16 O -0.57 -23.87 15.21 16.73 0.25 -23.62 16 17 C -0.22 -6.04 5.90 -19.94 -0.12 -6.16 16 18 C -0.01 -0.22 9.27 22.75 0.21 -0.01 16 19 C -0.19 -3.30 5.80 -19.85 -0.12 -3.42 16 20 C 0.18 3.55 6.68 42.50 0.28 3.83 16 21 N -0.53 -13.74 10.23 -295.96 -3.03 -16.76 16 22 C 0.36 10.48 7.77 85.17 0.66 11.14 16 23 O -0.48 -14.53 11.68 -66.50 -0.78 -15.31 16 24 C -0.10 -1.34 6.23 29.89 0.19 -1.15 16 25 C 0.06 0.52 6.84 71.96 0.49 1.01 16 26 O -0.39 -5.44 10.81 -148.98 -1.61 -7.05 16 27 C 0.11 1.29 6.65 71.20 0.47 1.76 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.48 6.64 -2.38 -0.02 1.47 16 30 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.04 1.53 8.08 -2.39 -0.02 1.52 16 32 H 0.05 1.94 7.83 -2.38 -0.02 1.92 16 33 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.07 3.60 5.52 -2.39 -0.01 3.59 16 35 H 0.05 1.90 7.86 -2.38 -0.02 1.88 16 36 H 0.05 2.13 6.64 -2.39 -0.02 2.12 16 37 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.41 10.46 6.58 -92.70 -0.61 9.85 16 39 H 0.17 2.41 6.51 -2.91 -0.02 2.39 16 40 H 0.42 9.08 9.06 -74.06 -0.67 8.41 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.07 0.47 8.07 -2.39 -0.02 0.45 16 44 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.82 377.85 -1.16 -74.98 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.25 Total: 21.17 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.24 Total: 25.38 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -7.06 Total: -121.81 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.13 Total: -45.97 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -73.82 -1.16 -74.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663443474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.609 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds