Wall clock time and date at job start Sat Apr 11 2020 04:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 116.99819 * 2 1 4 4 C 1.38808 * 120.01890 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.08289 * 179.97438 * 4 3 2 6 6 C 1.38162 * 120.12713 * 0.04508 * 5 4 3 7 7 C 1.38896 * 120.04071 * 359.95405 * 6 5 4 8 8 N 1.39919 * 120.04583 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00334 * 212.80371 * 8 7 6 10 10 O 1.21286 * 119.99957 * 5.20818 * 9 8 7 11 11 C 1.50704 * 119.99986 * 185.21521 * 9 8 7 12 12 N 1.46500 * 109.47021 * 179.97438 * 11 9 8 13 13 C 1.46503 * 120.00199 * 89.99617 * 12 11 9 14 14 C 1.34780 * 119.99676 * 269.99813 * 12 11 9 15 15 O 1.21282 * 120.00280 * 359.97438 * 14 12 11 16 16 C 1.50701 * 119.99642 * 180.02562 * 14 12 11 17 17 N 1.46507 * 109.46877 * 180.02562 * 16 14 12 18 18 C 1.46500 * 119.99408 * 269.99614 * 17 16 14 19 19 C 1.36928 * 120.00265 * 89.99746 * 17 16 14 20 20 H 1.08001 * 120.00010 * 23.67432 * 19 17 16 21 21 C 1.38815 * 120.00202 * 203.66629 * 19 17 16 22 22 N 1.31615 * 119.99403 * 14.37682 * 21 19 17 23 23 Si 1.86794 * 120.00053 * 194.37819 * 21 19 17 24 24 H 1.48499 * 109.47406 * 60.00406 * 23 21 19 25 25 H 1.48507 * 109.47016 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47324 * 299.99857 * 23 21 19 27 27 C 1.38587 * 120.02092 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46728 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47156 * 299.99795 * 1 2 3 30 30 H 1.08998 * 109.47693 * 59.99681 * 1 2 3 31 31 H 1.07997 * 119.95860 * 0.04205 * 4 3 2 32 32 H 1.07995 * 119.93686 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.98130 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99713 * 32.79577 * 8 7 6 35 35 H 1.08996 * 109.46931 * 299.99740 * 11 9 8 36 36 H 1.08999 * 109.46859 * 59.99546 * 11 9 8 37 37 H 1.08996 * 109.46686 * 90.00137 * 13 12 11 38 38 H 1.08997 * 109.46968 * 210.00073 * 13 12 11 39 39 H 1.09002 * 109.46858 * 330.00221 * 13 12 11 40 40 H 1.08999 * 109.46962 * 299.99699 * 16 14 12 41 41 H 1.08995 * 109.47270 * 60.00185 * 16 14 12 42 42 H 1.09000 * 109.47320 * 93.05099 * 18 17 16 43 43 H 1.09000 * 109.46882 * 213.05191 * 18 17 16 44 44 H 1.09000 * 109.47215 * 333.05337 * 18 17 16 45 45 H 0.97006 * 119.99596 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.05876 * 0.25923 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9161 3.6071 0.0000 6 6 3.2956 3.6841 0.0001 7 6 4.0568 2.5223 0.0007 8 7 5.4538 2.6001 0.0014 9 6 6.1816 1.6580 -0.6304 10 8 5.6263 0.7963 -1.2786 11 6 7.6853 1.6752 -0.5314 12 7 8.2380 0.5564 -1.2989 13 6 8.5738 0.7337 -2.7138 14 6 8.4375 -0.6360 -0.7032 15 8 8.1600 -0.7827 0.4683 16 6 9.0067 -1.7867 -1.4925 17 7 9.1255 -2.9619 -0.6259 18 6 10.3582 -3.1916 0.1317 19 6 8.0845 -3.8456 -0.5239 20 1 7.3573 -3.9174 -1.3192 21 6 7.9638 -4.6491 0.6015 22 7 8.6636 -4.3770 1.6825 23 14 6.8083 -6.1167 0.5818 24 1 7.2227 -7.0587 -0.4887 25 1 6.8611 -6.8060 1.8961 26 1 5.4220 -5.6517 0.3227 27 6 3.4298 1.2840 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2118 2.3183 -0.0003 32 1 1.3259 4.5115 0.0000 33 1 3.7823 4.6482 0.0001 34 1 5.8986 3.3323 0.4565 35 1 8.0651 2.6146 -0.9330 36 1 7.9816 1.5804 0.5132 37 1 9.6075 1.0676 -2.8028 38 1 8.4518 -0.2142 -3.2377 39 1 7.9119 1.4798 -3.1536 40 1 8.3450 -2.0169 -2.3276 41 1 9.9910 -1.5145 -1.8732 42 1 10.2610 -2.7542 1.1253 43 1 10.5346 -4.2635 0.2222 44 1 11.1963 -2.7281 -0.3889 45 1 8.5790 -4.9383 2.4691 46 1 4.0194 0.3791 -0.0052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:21:52 Heat of formation + Delta-G solvation = -28.131122 kcal Electronic energy + Delta-G solvation = -29189.621514 eV Core-core repulsion = 25081.947923 eV Total energy + Delta-G solvation = -4107.673591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73639 -39.71478 -38.69068 -37.31437 -35.23832 -34.60593 -34.44861 -31.27584 -30.83007 -30.05362 -28.56796 -27.33488 -26.86407 -25.77016 -25.34458 -23.18453 -22.24980 -21.40084 -20.45237 -18.86048 -18.39198 -17.35366 -16.69795 -16.47431 -16.31083 -16.17058 -15.89086 -15.77005 -15.37357 -14.86899 -14.73227 -14.48545 -13.76910 -13.63092 -13.50098 -13.21235 -12.99302 -12.96692 -12.75425 -12.44242 -12.33509 -12.19288 -11.95866 -11.77757 -11.60965 -11.40414 -11.16717 -11.09189 -10.72260 -10.58397 -10.32335 -10.30289 -9.94119 -9.88176 -9.79071 -8.98581 -8.44728 -8.38744 -8.21894 -8.14049 -6.64967 -5.60138 -3.06374 1.16416 1.36171 2.64305 2.79260 3.24310 3.47620 3.53490 3.55094 3.57909 3.67395 3.72482 4.61740 4.66279 4.76997 4.91328 4.97138 5.00803 5.01722 5.03373 5.24890 5.32776 5.34225 5.36685 5.45728 5.56365 5.62469 5.70764 5.78015 5.87998 5.93022 6.10865 6.16343 6.21677 6.29485 6.37647 6.40485 6.75787 6.78521 6.83561 7.33732 7.36808 7.41713 7.81363 7.92737 7.96635 8.16161 8.49114 9.11698 9.33209 9.94502 10.42507 11.44890 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.003589 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.954097 B = 7799.104456 C = 9914.972899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.148 3.852 4 C -0.230 4.230 5 C -0.064 4.064 6 C -0.188 4.188 7 C 0.193 3.807 8 N -0.679 5.679 9 C 0.493 3.507 10 O -0.495 6.495 11 C 0.100 3.900 12 N -0.619 5.619 13 C 0.090 3.910 14 C 0.478 3.522 15 O -0.502 6.502 16 C 0.136 3.864 17 N -0.571 5.571 18 C 0.162 3.838 19 C -0.261 4.261 20 H 0.068 0.932 21 C 0.011 3.989 22 N -0.894 5.894 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C -0.155 4.155 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.411 0.589 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.047 0.953 44 H -0.002 1.002 45 H 0.252 0.748 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 20.351 -6.157 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.102 3.898 4 C -0.250 4.250 5 C -0.082 4.082 6 C -0.209 4.209 7 C 0.098 3.902 8 N -0.325 5.325 9 C 0.279 3.721 10 O -0.366 6.366 11 C -0.028 4.028 12 N -0.358 5.358 13 C -0.054 4.054 14 C 0.264 3.736 15 O -0.372 6.372 16 C 0.004 3.996 17 N -0.290 5.290 18 C 0.018 3.982 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.188 4.188 22 N -0.537 5.537 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.176 4.176 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.016 0.984 45 H 0.062 0.938 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.103 19.171 -5.788 21.998 hybrid contribution -0.967 0.052 0.416 1.054 sum -10.071 19.223 -5.372 22.356 Atomic orbital electron populations 1.23059 0.78494 1.04027 1.01100 1.86162 1.21235 1.26747 1.88312 1.18806 0.91797 0.84255 0.94936 1.21170 0.99926 0.92308 1.11557 1.20634 0.93725 0.96915 0.96952 1.20742 0.93963 0.96740 1.09463 1.17378 0.82838 0.92976 0.97004 1.43664 1.04222 1.29410 1.55251 1.21901 0.91259 0.80731 0.78215 1.90759 1.72594 1.34840 1.38446 1.21128 0.88385 0.92410 1.00909 1.48284 1.65225 1.11169 1.11107 1.21653 0.99421 1.02820 0.81492 1.23833 0.77444 0.82785 0.89554 1.90698 1.48690 1.81030 1.16828 1.21071 0.98615 0.85641 0.94288 1.43916 1.13993 1.19578 1.51546 1.20832 0.83638 0.99469 0.94297 1.19108 1.06022 1.12986 1.00913 0.91376 1.25064 0.98659 1.00467 0.94642 1.70100 1.43452 1.38133 1.01971 0.86366 0.81034 0.82684 0.76647 1.20937 1.21615 1.20836 1.20450 0.91882 0.98626 1.06632 0.88192 0.92701 0.92721 0.85562 0.85547 0.85649 0.75300 0.88170 0.86944 0.93050 0.90672 0.92198 0.90745 0.91544 0.94881 0.93457 0.98392 0.93814 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.71 10.49 -19.44 -0.20 -4.92 16 3 C 0.15 2.20 6.68 -39.24 -0.26 1.94 16 4 C -0.23 -2.62 9.04 -39.40 -0.36 -2.98 16 5 C -0.06 -0.63 10.03 -39.63 -0.40 -1.03 16 6 C -0.19 -1.98 9.96 -39.37 -0.39 -2.38 16 7 C 0.19 2.64 6.29 -83.72 -0.53 2.11 16 8 N -0.68 -8.20 5.34 -9.88 -0.05 -8.26 16 9 C 0.49 7.63 7.64 -10.99 -0.08 7.55 16 10 O -0.50 -10.02 14.07 5.55 0.08 -9.94 16 11 C 0.10 1.34 5.89 -5.19 -0.03 1.31 16 12 N -0.62 -10.15 2.36 -182.95 -0.43 -10.58 16 13 C 0.09 1.07 10.24 59.85 0.61 1.69 16 14 C 0.48 10.51 7.74 -10.98 -0.09 10.42 16 15 O -0.50 -13.71 16.01 5.56 0.09 -13.62 16 16 C 0.14 2.94 4.74 -5.19 -0.02 2.92 16 17 N -0.57 -15.38 2.41 -182.50 -0.44 -15.82 16 18 C 0.16 4.22 9.03 59.85 0.54 4.76 16 19 C -0.26 -7.74 9.64 -15.06 -0.15 -7.88 16 20 H 0.07 1.99 7.86 -52.49 -0.41 1.57 16 21 C 0.01 0.35 5.05 -17.43 -0.09 0.26 16 22 N -0.89 -27.98 10.85 55.49 0.60 -27.38 16 23 Si 0.90 23.39 29.58 -169.99 -5.03 18.36 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 27 C -0.16 -2.60 8.60 -39.25 -0.34 -2.94 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.41 3.19 8.82 -40.82 -0.36 2.83 16 35 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.11 1.61 7.42 -51.93 -0.39 1.23 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 39 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.07 1.53 7.29 -51.93 -0.38 1.15 16 41 H 0.07 1.19 7.84 -51.93 -0.41 0.79 16 42 H 0.03 0.96 7.45 -51.93 -0.39 0.57 16 43 H 0.05 1.29 7.28 -51.93 -0.38 0.91 16 44 H 0.00 -0.05 7.86 -51.93 -0.41 -0.46 16 45 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.15 3.02 6.36 -52.48 -0.33 2.69 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -41.26 385.90 -6.73 -48.00 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.57 Total: 1.32 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -0.58 Total: 17.02 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.32 Total: -62.03 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.04 Total: -28.48 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.03 Total: 18.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -41.26 -6.73 -48.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.864 kcal (2) G-P(sol) polarization free energy of solvation -41.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds