Wall clock time and date at job start Sat Apr 11 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35743 * 117.00141 * 2 1 4 4 C 1.39209 * 120.81407 * 359.97438 * 3 2 1 5 5 C 1.38322 * 119.28667 * 179.74740 * 4 3 2 6 6 N 1.31604 * 120.97025 * 0.25982 * 5 4 3 7 7 C 1.32796 * 121.78597 * 359.97438 * 6 5 4 8 8 C 1.48184 * 119.70174 * 179.97438 * 7 6 5 9 9 O 1.21510 * 119.99770 * 172.06180 * 8 7 6 10 10 N 1.34776 * 119.99888 * 352.06270 * 8 7 6 11 11 C 1.47505 * 118.75924 * 180.52091 * 10 8 7 12 12 C 1.53573 * 111.02823 * 221.60742 * 11 10 8 13 13 C 1.51535 * 109.58303 * 39.97491 * 12 11 10 14 14 O 1.42151 * 108.75605 * 268.60055 * 13 12 11 15 15 C 1.38015 * 119.43936 * 87.22633 * 14 13 12 16 16 H 1.08999 * 109.46528 * 56.57297 * 15 14 13 17 17 C 1.53003 * 109.46888 * 176.56794 * 15 14 13 18 18 N 1.46502 * 109.47004 * 300.00181 * 17 15 14 19 19 C 1.36944 * 119.99719 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99942 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99856 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99729 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00271 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47321 * 90.00023 * 23 21 19 25 25 H 1.48498 * 109.47376 * 210.00453 * 23 21 19 26 26 H 1.48503 * 109.46934 * 330.00264 * 23 21 19 27 27 C 1.45127 * 118.75626 * 0.24774 * 10 8 7 28 28 C 1.39107 * 120.60036 * 0.02562 * 7 6 5 29 29 H 1.09005 * 109.46915 * 300.00096 * 1 2 3 30 30 H 1.09003 * 109.47049 * 60.00017 * 1 2 3 31 31 H 1.08996 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.36110 * 0.02660 * 4 3 2 33 33 H 1.08002 * 119.51307 * 180.27419 * 5 4 3 34 34 H 1.09003 * 109.16515 * 342.00214 * 11 10 8 35 35 H 1.09002 * 109.17111 * 101.20519 * 11 10 8 36 36 H 1.09007 * 109.45188 * 160.00796 * 12 11 10 37 37 H 1.08997 * 109.45099 * 279.93755 * 12 11 10 38 38 H 1.08998 * 109.59427 * 28.38167 * 13 12 11 39 39 H 1.08998 * 109.58831 * 148.67292 * 13 12 11 40 40 H 1.08993 * 109.47246 * 60.00434 * 17 15 14 41 41 H 1.09003 * 109.46728 * 180.02562 * 17 15 14 42 42 H 0.96991 * 120.00458 * 0.02562 * 18 17 15 43 43 H 0.97004 * 119.99340 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.45966 * 210.75582 * 27 10 8 45 45 H 1.08990 * 109.46259 * 330.72039 * 27 10 8 46 46 H 1.08003 * 120.50858 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3876 -0.0005 5 6 1.9644 3.6029 0.0048 6 7 3.2793 3.6590 0.0052 7 6 4.0262 2.5610 0.0011 8 6 5.5035 2.6780 0.0012 9 8 6.1914 1.6864 0.1428 10 7 6.0840 3.8841 -0.1557 11 6 7.5566 3.9674 -0.1630 12 6 8.0437 5.1834 0.6386 13 6 7.2008 5.3389 1.8882 14 8 6.1080 6.2004 1.5981 15 6 4.9452 5.6695 1.0775 16 1 4.5673 4.8966 1.7468 17 6 3.8987 6.7764 0.9343 18 7 3.6229 7.3608 2.2491 19 6 2.7121 8.3764 2.3695 20 1 2.1974 8.7467 1.4952 21 6 2.4512 8.9304 3.6152 22 7 1.5754 9.9062 3.7310 23 14 3.3418 8.2904 5.1273 24 1 4.5973 9.0585 5.3244 25 1 2.4711 8.4506 6.3195 26 1 3.6651 6.8532 4.9400 27 6 5.2365 5.0511 -0.3172 28 6 3.4346 1.3021 -0.0044 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2244 2.3533 -0.0005 33 1 1.3928 4.5192 0.0089 34 1 7.9686 3.0597 0.2781 35 1 7.9052 4.0542 -1.1921 36 1 9.0868 5.0385 0.9201 37 1 7.9546 6.0810 0.0266 38 1 6.8251 4.3641 2.1993 39 1 7.8061 5.7688 2.6862 40 1 4.2766 7.5493 0.2651 41 1 2.9802 6.3570 0.5235 42 1 4.0853 7.0285 3.0342 43 1 1.3933 10.2936 4.6015 44 1 5.7449 5.7855 -0.9419 45 1 4.3002 4.7572 -0.7915 46 1 4.0435 0.4101 -0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201119708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:22:19 Heat of formation + Delta-G solvation = -26.444663 kcal Electronic energy + Delta-G solvation = -30240.201929 eV Core-core repulsion = 26132.601469 eV Total energy + Delta-G solvation = -4107.600461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.36131 -40.18421 -38.71770 -38.18899 -35.46110 -34.82201 -33.18689 -31.89131 -31.60311 -31.00973 -28.97372 -28.00230 -26.80346 -25.48847 -24.11002 -23.62291 -22.28737 -21.46104 -20.94079 -19.98068 -18.30698 -17.76688 -17.60062 -16.78070 -16.53896 -16.44149 -16.23241 -15.78855 -15.71473 -15.00571 -14.88500 -14.68228 -14.29426 -14.25192 -13.96855 -13.48469 -13.40741 -13.37271 -12.87415 -12.67193 -12.50924 -12.34765 -12.20341 -11.99456 -11.89361 -11.60247 -11.31325 -11.09786 -10.80275 -10.75460 -10.40267 -10.21679 -10.02615 -9.53661 -9.51447 -9.45497 -9.26908 -9.13092 -8.81230 -8.46866 -7.11528 -5.69755 -3.02754 0.40076 1.01240 2.52789 2.55138 2.96409 3.45115 3.50638 3.51943 3.60732 3.89382 3.99170 4.31081 4.50909 4.63968 4.67975 4.72770 4.74213 4.81761 4.83556 4.89185 5.05618 5.10439 5.26070 5.31839 5.33558 5.42177 5.53185 5.57766 5.61159 5.65575 5.72282 5.74508 5.85802 5.92199 6.04333 6.05967 6.13568 6.36484 6.52195 6.69351 6.78990 6.82085 7.18250 7.54782 7.96499 8.01747 8.08416 8.50103 9.30983 10.04178 10.25651 11.48915 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.004503 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.515822 B = 6216.727245 C = 8504.415098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.162 3.838 4 C -0.239 4.239 5 C 0.140 3.860 6 N -0.465 5.465 7 C 0.111 3.889 8 C 0.566 3.434 9 O -0.538 6.538 10 N -0.586 5.586 11 C 0.108 3.892 12 C -0.164 4.164 13 C 0.073 3.927 14 O -0.376 6.376 15 C 0.096 3.904 16 H 0.047 0.953 17 C 0.177 3.823 18 N -0.751 5.751 19 C -0.237 4.237 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.937 5.937 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.055 3.945 28 C -0.145 4.145 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.045 0.955 42 H 0.363 0.637 43 H 0.258 0.742 44 H 0.073 0.927 45 H 0.142 0.858 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -19.264 -11.241 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.109 3.891 4 C -0.260 4.260 5 C -0.018 4.018 6 N -0.180 5.180 7 C -0.025 4.025 8 C 0.353 3.647 9 O -0.415 6.415 10 N -0.316 5.316 11 C -0.014 4.014 12 C -0.202 4.202 13 C -0.004 4.004 14 O -0.294 6.294 15 C 0.036 3.964 16 H 0.065 0.935 17 C 0.049 3.951 18 N -0.396 5.396 19 C -0.367 4.367 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.586 5.586 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.205 1.205 27 C -0.068 4.068 28 C -0.167 4.167 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.196 0.804 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.158 0.842 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.380 -18.856 -11.210 22.369 hybrid contribution -0.155 -1.272 1.157 1.726 sum 4.224 -20.127 -10.053 22.892 Atomic orbital electron populations 1.23191 0.77394 1.04547 1.01981 1.86078 1.22159 1.26005 1.87792 1.19194 0.92057 0.84888 0.92991 1.22472 1.02017 0.93103 1.08401 1.22960 0.90023 0.97688 0.91129 1.68192 1.06924 1.29166 1.13734 1.20898 0.94168 0.88944 0.98535 1.17970 0.86082 0.83512 0.77132 1.90759 1.63508 1.36716 1.50505 1.47823 1.06838 1.07354 1.69616 1.21900 0.78757 1.00019 1.00689 1.22474 1.00466 0.98713 0.98563 1.22103 0.87949 0.94501 0.95842 1.86391 1.22843 1.37471 1.82739 1.22283 0.85170 0.96430 0.92515 0.93468 1.20534 0.93244 0.92082 0.89233 1.42597 1.50301 1.43009 1.03740 1.19060 1.14109 1.08328 0.95181 0.89227 1.24618 0.99153 0.98310 0.97113 1.69709 1.37306 1.28125 1.23474 0.86538 0.79453 0.78614 0.83881 1.21067 1.22011 1.20514 1.23551 0.97230 0.86450 0.99564 1.21275 0.91983 0.99389 1.04075 0.91997 0.92105 0.87738 0.83727 0.80921 0.89140 0.91436 0.89728 0.89927 0.93599 0.89458 0.95158 0.93705 0.80388 0.93222 0.90832 0.84152 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.99 10.51 -18.94 -0.20 -3.19 16 3 C 0.16 1.75 6.73 -38.85 -0.26 1.49 16 4 C -0.24 -2.27 9.12 -39.19 -0.36 -2.63 16 5 C 0.14 1.53 11.17 -17.62 -0.20 1.34 16 6 N -0.46 -6.00 4.80 -9.87 -0.05 -6.04 16 7 C 0.11 1.49 6.58 -83.04 -0.55 0.95 16 8 C 0.57 8.26 7.62 -12.17 -0.09 8.17 16 9 O -0.54 -8.81 15.65 5.36 0.08 -8.73 16 10 N -0.59 -7.82 2.18 -173.12 -0.38 -8.19 16 11 C 0.11 1.23 6.16 -3.19 -0.02 1.21 16 12 C -0.16 -1.79 5.79 -27.18 -0.16 -1.94 16 13 C 0.07 1.01 6.37 36.42 0.23 1.24 16 14 O -0.38 -6.57 9.18 -26.53 -0.24 -6.81 16 15 C 0.10 1.61 2.05 -25.50 -0.05 1.56 16 16 H 0.05 0.87 7.59 -51.93 -0.39 0.47 16 17 C 0.18 3.45 5.95 -4.04 -0.02 3.42 16 18 N -0.75 -18.41 5.29 -59.91 -0.32 -18.73 16 19 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 20 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.94 -29.65 13.97 55.49 0.78 -28.88 16 23 Si 0.88 22.94 27.74 -169.99 -4.71 18.23 16 24 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 26 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 27 C 0.06 0.76 4.45 -3.55 -0.02 0.74 16 28 C -0.15 -1.79 9.60 -38.89 -0.37 -2.16 16 29 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 30 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 0.97 6.45 -52.49 -0.34 0.63 16 33 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 38 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.36 9.07 5.39 -40.82 -0.22 8.85 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 45 H 0.14 1.86 4.69 -70.96 -0.33 1.53 16 46 H 0.15 1.85 7.66 -52.48 -0.40 1.45 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -35.28 368.43 -7.23 -42.52 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.62 Total: 6.69 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.12 Total: 7.59 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.03 Total: -61.85 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.36 Total: -18.73 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.28 -7.23 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201119708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.074 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds