Wall clock time and date at job start Sat Apr 11 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35907 * 117.00442 * 2 1 4 4 C 1.39141 * 120.47551 * 179.72319 * 3 2 1 5 5 C 1.38536 * 118.37183 * 180.27595 * 4 3 2 6 6 C 1.38248 * 119.22459 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.55689 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47477 * 124.97724 * 7 6 5 9 9 O 1.21285 * 119.99983 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00183 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47261 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.51203 * 60.10168 * 12 11 10 14 14 C 1.53287 * 109.51430 * 180.25597 * 12 11 10 15 15 N 1.47158 * 108.38544 * 172.22630 * 14 12 11 16 16 C 1.36932 * 120.98145 * 129.48199 * 15 14 12 17 17 H 1.08005 * 120.00324 * 206.20567 * 16 15 14 18 18 C 1.38812 * 120.00227 * 26.21666 * 16 15 14 19 19 N 1.31619 * 120.00070 * 16.92237 * 18 16 15 20 20 Si 1.86807 * 120.00006 * 196.92713 * 18 16 15 21 21 H 1.48501 * 109.47071 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47104 * 119.99471 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99299 * 20 18 16 24 24 C 1.47149 * 118.03430 * 309.46288 * 15 14 12 25 25 C 1.53305 * 108.38375 * 50.53328 * 24 15 14 26 26 O 1.42957 * 109.22131 * 307.69906 * 25 24 15 27 27 N 1.31847 * 120.88721 * 359.97438 * 6 5 4 28 28 C 1.31844 * 121.78072 * 0.02562 * 27 6 5 29 29 H 1.09006 * 109.46877 * 300.00018 * 1 2 3 30 30 H 1.08997 * 109.47196 * 59.99158 * 1 2 3 31 31 H 1.08993 * 109.47665 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.81023 * 0.25548 * 4 3 2 33 33 H 1.08001 * 120.38482 * 179.97438 * 5 4 3 34 34 H 1.09009 * 109.47155 * 244.97699 * 7 6 5 35 35 H 1.09003 * 109.47259 * 4.97291 * 7 6 5 36 36 H 0.97000 * 120.00000 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47516 * 299.99827 * 11 10 8 38 38 H 1.08994 * 109.47323 * 60.00282 * 11 10 8 39 39 H 1.09002 * 109.68307 * 291.94645 * 14 12 11 40 40 H 1.08997 * 109.68341 * 52.50256 * 14 12 11 41 41 H 0.97000 * 120.00432 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.68464 * 290.81515 * 24 15 14 43 43 H 1.08998 * 109.71406 * 170.27167 * 24 15 14 44 44 H 1.09000 * 109.51061 * 187.77255 * 25 24 15 45 45 H 1.09002 * 109.51033 * 67.62325 * 25 24 15 46 46 H 1.07997 * 119.65369 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4350 1.2951 0.0058 5 6 4.0182 2.5517 0.0114 6 6 3.2081 3.6719 0.0116 7 6 3.8346 5.0425 0.0171 8 6 3.3066 5.8410 -1.1467 9 8 2.5004 5.3461 -1.9057 10 7 3.7294 7.1055 -1.3436 11 6 3.2164 7.8815 -2.4753 12 6 3.8525 9.2731 -2.4697 13 1 4.9349 9.1790 -2.5569 14 6 3.3116 10.0881 -3.6498 15 7 3.7903 11.4732 -3.5156 16 6 4.3996 12.1129 -4.5619 17 1 5.1011 12.9117 -4.3717 18 6 4.1154 11.7348 -5.8669 19 7 3.0435 11.0160 -6.1253 20 14 5.2544 12.2461 -7.2565 21 1 6.3796 13.0437 -6.7061 22 1 5.7884 11.0351 -7.9300 23 1 4.5003 13.0665 -8.2382 24 6 3.5946 12.1505 -2.2240 25 6 4.1217 11.2348 -1.1132 26 8 3.5281 9.9413 -1.2482 27 7 1.8946 3.5573 0.0061 28 6 1.3003 2.3804 0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 4.0433 0.4028 0.0062 33 1 5.0933 2.6549 0.0164 34 1 3.5873 5.5513 0.9489 35 1 4.9171 4.9475 -0.0687 36 1 4.3739 7.5015 -0.7364 37 1 3.4645 7.3729 -3.4070 38 1 2.1339 7.9761 -2.3902 39 1 3.6741 9.6636 -4.5860 40 1 2.2218 10.0736 -3.6372 41 1 2.8451 10.7515 -7.0372 42 1 2.5333 12.3435 -2.0678 43 1 4.1441 13.0917 -2.2155 44 1 3.8623 11.6549 -0.1414 45 1 5.2052 11.1487 -1.1959 46 1 0.2217 2.3265 -0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753653152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:23:12 Heat of formation + Delta-G solvation = -53.250246 kcal Electronic energy + Delta-G solvation = -28216.999733 eV Core-core repulsion = 24108.236895 eV Total energy + Delta-G solvation = -4108.762838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95583 -39.52538 -38.56718 -38.08480 -34.73727 -34.25683 -32.65473 -32.62485 -31.34701 -30.85070 -28.56556 -27.64959 -27.08133 -25.26800 -23.65124 -23.28930 -22.52739 -21.57228 -20.36443 -19.54363 -18.45351 -17.45633 -17.10414 -16.73207 -16.37306 -16.14871 -15.97629 -15.36724 -15.07941 -15.04464 -14.45194 -14.42843 -14.34223 -14.02082 -13.83534 -13.37070 -13.25534 -13.20265 -12.88050 -12.80305 -12.54022 -12.38574 -12.20846 -11.90301 -11.62269 -11.48035 -11.11162 -10.86432 -10.72018 -10.41547 -10.25820 -10.03702 -9.95141 -9.72548 -9.64706 -9.48747 -9.07145 -8.76443 -8.57376 -8.56327 -6.76875 -5.85630 -3.29449 0.88158 1.08659 2.84212 2.88336 3.28216 3.33590 3.40955 3.42977 3.69408 4.09991 4.26920 4.39896 4.42877 4.44617 4.64154 4.78299 4.81602 5.00004 5.08024 5.14384 5.20655 5.21784 5.26957 5.34875 5.40562 5.55964 5.65255 5.70848 5.83787 5.86582 5.93264 6.05182 6.13215 6.23866 6.26557 6.40303 6.51017 6.73158 6.78192 6.88854 7.06593 7.47983 7.69865 7.74781 7.84569 7.85600 8.31742 8.48130 9.09515 9.72617 10.29669 11.22373 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002053 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.760109 B =13637.123755 C =14258.521439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.109 3.891 7 C -0.088 4.088 8 C 0.514 3.486 9 O -0.528 6.528 10 N -0.722 5.722 11 C 0.134 3.866 12 C 0.056 3.944 13 H 0.055 0.945 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 N -0.419 5.419 28 C 0.026 3.974 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.401 0.599 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -18.485 16.124 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.023 3.977 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.128 4.128 8 C 0.299 3.701 9 O -0.403 6.403 10 N -0.374 5.374 11 C 0.011 3.989 12 C -0.004 4.004 13 H 0.073 0.927 14 C 0.025 3.975 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.309 6.309 27 N -0.127 5.127 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.235 0.765 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.169 -18.401 15.515 24.070 hybrid contribution 1.178 -0.001 -0.752 1.397 sum 1.347 -18.403 14.762 23.630 Atomic orbital electron populations 1.23126 0.77933 1.04283 1.01800 1.86053 1.21727 1.26177 1.88689 1.20103 0.93319 0.85746 0.98576 1.20846 0.91649 0.98709 1.02370 1.21793 1.01266 0.91637 0.99890 1.20470 0.89277 0.94325 0.98938 1.20540 1.01049 0.91787 0.99468 1.20214 0.81895 0.81847 0.86181 1.90734 1.32884 1.70116 1.46583 1.45934 1.46823 1.13566 1.31110 1.21374 0.99574 0.89133 0.88857 1.23142 0.98378 0.91008 0.87837 0.92669 1.21311 0.96847 0.84103 0.95201 1.44055 1.69529 1.09308 1.08929 1.19226 1.17589 1.17096 0.84611 0.91301 1.25070 0.96582 1.00480 0.97554 1.70029 1.23992 1.41183 1.19320 0.86196 0.80325 0.77898 0.82187 1.20232 1.21431 1.21619 1.21604 0.98186 0.94945 0.87047 1.23000 0.96501 0.84325 0.98953 1.87780 1.73768 1.30617 1.38726 1.67306 1.11485 1.26245 1.07705 1.22891 1.00518 0.86926 1.02927 0.92369 0.92214 0.87945 0.84034 0.83990 0.87144 0.87426 0.76508 0.90209 0.90850 0.88617 0.95071 0.93440 0.95569 0.92002 0.90037 0.93886 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -2.97 10.51 -19.45 -0.20 -3.18 16 3 C 0.07 0.74 6.71 -39.07 -0.26 0.48 16 4 C -0.11 -1.05 10.13 -39.14 -0.40 -1.44 16 5 C -0.13 -1.19 9.70 -39.47 -0.38 -1.57 16 6 C 0.11 1.31 5.76 -82.58 -0.48 0.83 16 7 C -0.09 -0.90 6.10 -29.04 -0.18 -1.07 16 8 C 0.51 7.56 7.76 -10.98 -0.09 7.48 16 9 O -0.53 -10.15 15.33 5.55 0.09 -10.07 16 10 N -0.72 -10.20 5.45 -60.29 -0.33 -10.53 16 11 C 0.13 2.32 5.37 -4.04 -0.02 2.30 16 12 C 0.06 1.05 2.87 -26.58 -0.08 0.97 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.59 4.73 -3.53 -0.02 3.58 16 15 N -0.59 -14.78 3.05 -171.83 -0.52 -15.30 16 16 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 17 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -25.95 11.14 55.49 0.62 -25.33 16 20 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.11 2.25 6.73 -3.53 -0.02 2.22 16 25 C 0.05 0.86 6.99 37.32 0.26 1.13 16 26 O -0.39 -7.16 10.13 -35.23 -0.36 -7.51 16 27 N -0.42 -5.90 9.21 -9.35 -0.09 -5.99 16 28 C 0.03 0.31 10.22 -17.37 -0.18 0.13 16 29 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 30 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.14 0.87 7.95 -52.49 -0.42 0.46 16 34 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.11 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.40 4.67 8.35 -40.82 -0.34 4.33 16 37 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.16 1.48 6.32 -52.49 -0.33 1.15 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -35.31 380.69 -7.97 -43.28 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.80 Total: 3.47 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.07 Total: 9.07 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.32 Total: -57.15 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.48 Total: -20.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.31 -7.97 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753653152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.972 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds