Wall clock time and date at job start Sat Apr 11 2020 04:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47374 * 300.00020 * 3 2 1 6 6 H 1.48506 * 109.46994 * 59.99948 * 3 2 1 7 7 C 1.38950 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00260 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00035 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47378 * 186.05472 * 12 10 9 14 14 C 1.48561 * 111.00028 * 176.48807 * 13 12 10 15 15 C 1.54379 * 104.59168 * 200.96229 * 14 13 12 16 16 C 1.54256 * 105.06441 * 23.85496 * 15 14 13 17 17 H 1.09003 * 110.32219 * 241.00326 * 16 15 14 18 18 C 1.52993 * 110.32604 * 118.89544 * 16 15 14 19 19 N 1.46496 * 109.47428 * 67.82686 * 18 16 15 20 20 C 1.34775 * 120.00543 * 179.97438 * 19 18 16 21 21 O 1.21288 * 119.99499 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00479 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47326 * 180.02562 * 22 20 19 24 24 N 1.30497 * 125.65089 * 304.97139 * 23 22 20 25 25 C 1.34129 * 109.25688 * 179.77593 * 24 23 22 26 26 C 1.34669 * 108.02043 * 0.40233 * 25 24 23 27 27 N 1.35045 * 125.65185 * 125.00262 * 23 22 20 28 28 H 0.97004 * 126.39538 * 359.97229 * 27 23 22 29 29 C 1.48729 * 111.01305 * 60.98013 * 13 12 10 30 30 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 31 31 H 0.97009 * 119.99895 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47272 * 66.05494 * 12 10 9 33 33 H 1.08999 * 109.46726 * 306.05917 * 12 10 9 34 34 H 1.08997 * 110.41410 * 82.18082 * 14 13 12 35 35 H 1.08999 * 110.51220 * 319.78968 * 14 13 12 36 36 H 1.09000 * 110.32227 * 264.95208 * 15 14 13 37 37 H 1.09004 * 110.40963 * 142.79370 * 15 14 13 38 38 H 1.09001 * 109.47182 * 307.82408 * 18 16 15 39 39 H 1.09008 * 109.47049 * 187.82849 * 18 16 15 40 40 H 0.97001 * 119.99743 * 0.02562 * 19 18 16 41 41 H 1.09001 * 109.47353 * 59.99815 * 22 20 19 42 42 H 1.08998 * 109.47029 * 300.00137 * 22 20 19 43 43 H 1.08002 * 125.99273 * 180.25545 * 25 24 23 44 44 H 1.07995 * 126.59162 * 179.87718 * 26 25 24 45 45 H 1.09001 * 110.38564 * 40.23851 * 29 13 12 46 46 H 1.08995 * 110.50676 * 277.74860 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3236 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2104 -3.5578 0.0021 12 6 1.2440 -4.8629 0.0010 13 7 2.1918 -5.9755 0.1484 14 6 1.4775 -7.2752 0.2366 15 6 2.4876 -8.2292 0.9095 16 6 3.4443 -7.3100 1.6965 17 1 4.4645 -7.4222 1.3295 18 6 3.3799 -7.6308 3.1911 19 7 3.9464 -8.9605 3.4300 20 6 3.9958 -9.4570 4.6820 21 8 3.5708 -8.8030 5.6109 22 6 4.5791 -10.8246 4.9279 23 6 4.5156 -11.1406 6.4000 24 7 5.0105 -10.4053 7.3578 25 6 4.7638 -10.9921 8.5384 26 6 4.0983 -12.1389 8.3027 27 7 3.9376 -12.2319 6.9466 28 1 3.4917 -12.9479 6.4675 29 6 2.9344 -5.8769 1.4333 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.7022 -4.9693 -0.9389 33 1 0.5375 -4.8749 0.8310 34 1 1.2195 -7.6355 -0.7591 35 1 0.5810 -7.1775 0.8488 36 1 3.0379 -8.7914 0.1550 37 1 1.9735 -8.9102 1.5879 38 1 2.3415 -7.6134 3.5220 39 1 3.9510 -6.8872 3.7472 40 1 4.2866 -9.4834 2.6872 41 1 5.6174 -10.8417 4.5967 42 1 4.0082 -11.5683 4.3720 43 1 5.0509 -10.6128 9.5080 44 1 3.7535 -12.8467 9.0419 45 1 2.2671 -5.5576 2.2339 46 1 3.7725 -5.1867 1.3379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317536339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:24:07 Heat of formation + Delta-G solvation = -4.498280 kcal Electronic energy + Delta-G solvation = -27696.987055 eV Core-core repulsion = 23622.631012 eV Total energy + Delta-G solvation = -4074.356043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34165 -39.93894 -39.06839 -37.61693 -35.07115 -33.88614 -32.84044 -32.61528 -31.78603 -31.13959 -29.39148 -27.92425 -26.85773 -25.01614 -23.95296 -21.90381 -21.63271 -21.13867 -20.40554 -20.07423 -19.12954 -18.31888 -17.84042 -17.34401 -16.49845 -15.93002 -15.82258 -15.52689 -15.21891 -14.94695 -14.53595 -14.43535 -14.29820 -14.09520 -13.74713 -13.66401 -13.49797 -13.27651 -13.22130 -12.64456 -12.42923 -12.27904 -11.96115 -11.81054 -11.48627 -11.23974 -11.07831 -10.99012 -10.80919 -10.52347 -10.32416 -10.30237 -10.21065 -10.20298 -10.02722 -9.48172 -9.21930 -8.72125 -8.45099 -8.04256 -7.92669 -6.40466 -3.81149 1.68170 2.45694 2.58710 2.86989 3.17824 3.19008 3.28466 3.35746 3.91654 3.94053 4.06011 4.26267 4.45178 4.54372 4.62114 4.75932 4.79685 4.81780 4.90311 5.13147 5.15132 5.21360 5.26808 5.34880 5.37254 5.47553 5.70720 5.71365 5.74891 5.75797 5.79613 5.87676 5.93549 6.05641 6.17623 6.28248 6.32654 6.45796 6.52409 6.97777 7.12465 7.23096 7.29872 7.56857 7.84938 8.06097 8.07725 8.62834 9.19507 9.55616 10.07158 10.77351 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.001813 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.437739 B =15438.814030 C =16379.409842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.034 3.966 13 N -0.485 5.485 14 C 0.028 3.972 15 C -0.119 4.119 16 C -0.105 4.105 17 H 0.087 0.913 18 C 0.129 3.871 19 N -0.729 5.729 20 C 0.514 3.486 21 O -0.512 6.512 22 C -0.054 4.054 23 C 0.216 3.784 24 N -0.459 5.459 25 C -0.026 4.026 26 C -0.057 4.057 27 N -0.567 5.567 28 H 0.417 0.583 29 C 0.045 3.955 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.041 0.959 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -28.593 8.521 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.097 4.097 13 N -0.209 5.209 14 C -0.100 4.100 15 C -0.157 4.157 16 C -0.125 4.125 17 H 0.105 0.895 18 C 0.005 3.995 19 N -0.382 5.382 20 C 0.297 3.703 21 O -0.386 6.386 22 C -0.096 4.096 23 C -0.049 4.049 24 N -0.178 5.178 25 C -0.174 4.174 26 C -0.190 4.190 27 N -0.171 5.171 28 H 0.254 0.746 29 C -0.083 4.083 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.187 0.813 44 H 0.194 0.806 45 H 0.059 0.941 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.797 -27.109 8.679 28.866 hybrid contribution -1.500 -0.517 0.271 1.610 sum 3.297 -27.627 8.950 29.227 Atomic orbital electron populations 1.69622 1.05945 1.28043 1.50713 1.25267 0.95635 0.99737 0.97350 0.85802 0.79728 0.81142 0.77683 1.19199 1.20762 1.20779 1.19753 0.93399 0.82182 1.47416 0.87824 1.41873 1.09192 1.04611 1.64373 1.19705 0.88398 0.84545 0.84550 1.90494 1.13630 1.86945 1.55203 1.22075 0.94197 0.91582 1.01884 1.65215 1.22229 1.00211 1.33271 1.23159 0.95625 0.90791 1.00452 1.22382 0.97014 0.97356 0.98948 1.22191 1.00853 0.96340 0.93090 0.89466 1.21461 0.99028 0.83378 0.95634 1.45943 1.64165 1.19621 1.08490 1.20096 0.79565 0.87707 0.82916 1.90807 1.45638 1.59986 1.42160 1.19915 1.04677 0.96430 0.88566 1.22331 1.00284 0.86566 0.95705 1.70261 1.21552 1.27803 0.98193 1.22417 1.03677 0.94032 0.97306 1.22745 1.08757 1.03188 0.84355 1.43214 1.45381 1.20894 1.07594 0.74560 1.23178 0.99948 0.95237 0.89927 0.91939 0.77503 0.89120 0.93401 0.90250 0.94113 0.90956 0.91404 0.91488 0.90948 0.76622 0.86193 0.87549 0.81294 0.80566 0.94110 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.44 10.46 7.43 -10.99 -0.08 10.38 16 11 O -0.58 -15.49 14.01 5.54 0.08 -15.41 16 12 C 0.03 0.62 5.39 -4.98 -0.03 0.59 16 13 N -0.49 -7.94 5.18 -231.26 -1.20 -9.14 16 14 C 0.03 0.34 6.49 -2.18 -0.01 0.32 16 15 C -0.12 -1.13 6.39 -25.35 -0.16 -1.30 16 16 C -0.11 -1.18 3.10 -89.24 -0.28 -1.46 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C 0.13 1.43 4.74 -4.05 -0.02 1.41 16 19 N -0.73 -6.18 5.37 -60.30 -0.32 -6.51 16 20 C 0.51 5.42 7.82 -10.99 -0.09 5.33 16 21 O -0.51 -8.20 15.55 5.55 0.09 -8.12 16 22 C -0.05 -0.35 6.33 -29.04 -0.18 -0.54 16 23 C 0.22 2.09 6.96 -155.42 -1.08 1.01 16 24 N -0.46 -6.00 10.58 -10.82 -0.11 -6.12 16 25 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 26 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 27 N -0.57 -3.75 6.15 -10.23 -0.06 -3.82 16 28 H 0.42 1.16 8.96 -40.82 -0.37 0.80 16 29 C 0.05 0.72 5.13 -2.09 -0.01 0.71 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.48 7.92 -51.93 -0.41 0.06 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.55 7.67 -51.93 -0.40 0.16 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.40 2.08 8.36 -40.82 -0.34 1.74 16 41 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 46 H 0.11 2.06 6.54 -51.93 -0.34 1.73 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -38.37 384.65 -9.42 -47.79 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.73 Total: 10.36 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.59 Total: 7.37 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -1.03 Total: -64.01 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.16 Total: -23.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.37 -9.42 -47.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317536339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.289 kcal (2) G-P(sol) polarization free energy of solvation -38.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds