Wall clock time and date at job start Sat Apr 11 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47146 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00102 * 290.84591 * 13 12 10 15 15 C 1.54911 * 104.79522 * 213.63721 * 14 13 12 16 16 C 1.55141 * 101.65277 * 37.06450 * 15 14 13 17 17 H 1.09009 * 110.70194 * 82.73247 * 16 15 14 18 18 C 1.53000 * 110.70617 * 205.96225 * 16 15 14 19 19 N 1.46498 * 109.47364 * 288.60574 * 18 16 15 20 20 C 1.34774 * 120.00054 * 180.02562 * 19 18 16 21 21 O 1.21277 * 120.00120 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99831 * 179.97438 * 20 19 18 23 23 C 1.50709 * 109.46833 * 179.97438 * 22 20 19 24 24 N 1.30490 * 125.64974 * 304.69306 * 23 22 20 25 25 C 1.34129 * 109.25506 * 179.89718 * 24 23 22 26 26 C 1.34670 * 108.01976 * 0.36651 * 25 24 23 27 27 N 1.35046 * 125.64714 * 125.00083 * 23 22 20 28 28 H 0.96999 * 126.39970 * 359.97438 * 27 23 22 29 29 C 1.47443 * 111.00128 * 169.99945 * 13 12 10 30 30 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 33 33 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 34 34 H 1.09000 * 110.36968 * 332.46159 * 14 13 12 35 35 H 1.08994 * 110.37553 * 94.80579 * 14 13 12 36 36 H 1.09004 * 110.99124 * 278.97465 * 15 14 13 37 37 H 1.08994 * 110.99268 * 155.16020 * 15 14 13 38 38 H 1.09007 * 109.46898 * 48.60286 * 18 16 15 39 39 H 1.08996 * 109.47191 * 168.59913 * 18 16 15 40 40 H 0.97001 * 120.00010 * 359.97438 * 19 18 16 41 41 H 1.09002 * 109.46871 * 299.99464 * 22 20 19 42 42 H 1.08996 * 109.47401 * 59.99688 * 22 20 19 43 43 H 1.08003 * 125.98815 * 180.11209 * 25 24 23 44 44 H 1.08000 * 126.58858 * 179.74776 * 26 25 24 45 45 H 1.09004 * 109.89213 * 242.66305 * 29 13 12 46 46 H 1.09000 * 109.88799 * 3.85240 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 2.9160 -6.0636 -1.2872 15 6 3.1544 -7.5781 -1.5092 16 6 1.8430 -8.1874 -0.9472 17 1 1.0506 -8.1528 -1.6950 18 6 2.0747 -9.6219 -0.4684 19 7 2.2688 -10.4980 -1.6264 20 6 2.4904 -11.8150 -1.4454 21 8 2.5296 -12.2748 -0.3239 22 6 2.6895 -12.7162 -2.6367 23 6 2.9179 -14.1293 -2.1650 24 7 3.8394 -14.5105 -1.3234 25 6 3.7451 -15.8351 -1.1344 26 6 2.7316 -16.2931 -1.8937 27 7 2.2065 -15.2115 -2.5477 28 1 1.4625 -15.2206 -3.1700 29 6 1.5115 -7.2619 0.2423 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 0.0024 32 1 0.6175 -4.9205 0.8924 33 1 0.6169 -4.9209 -0.8876 34 1 2.3028 -5.6543 -2.0900 35 1 3.8671 -5.5345 -1.2275 36 1 4.0195 -7.9242 -0.9437 37 1 3.2670 -7.8043 -2.5695 38 1 2.9615 -9.6548 0.1648 39 1 1.2089 -9.9591 0.1014 40 1 2.2371 -10.1303 -2.5234 41 1 1.8027 -12.6830 -3.2696 42 1 3.5554 -12.3794 -3.2065 43 1 4.3746 -16.4305 -0.4896 44 1 2.3978 -17.3173 -1.9720 45 1 1.8707 -7.7074 1.1700 46 1 0.4348 -7.1011 0.2982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317536341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:24:12 Heat of formation + Delta-G solvation = -4.897800 kcal Electronic energy + Delta-G solvation = -27405.521014 eV Core-core repulsion = 23331.147646 eV Total energy + Delta-G solvation = -4074.373368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.38406 -39.98287 -39.11160 -37.63625 -35.12697 -33.86258 -32.87712 -32.64906 -31.77199 -31.13203 -29.47178 -28.00321 -26.94860 -24.94392 -23.91128 -21.94219 -21.62124 -21.02416 -20.76226 -20.13767 -19.18192 -18.36910 -17.86046 -17.38407 -16.64672 -15.97603 -15.81514 -15.56642 -15.12402 -14.68742 -14.63462 -14.42018 -14.24256 -14.07737 -13.88830 -13.68816 -13.60991 -13.37463 -13.16443 -12.77240 -12.62423 -12.27703 -12.04136 -11.70866 -11.46903 -11.24038 -11.13820 -10.95158 -10.86478 -10.62540 -10.42477 -10.34412 -10.25411 -10.19292 -10.10552 -9.46288 -9.29338 -8.76279 -8.42010 -7.94742 -7.84738 -6.39400 -3.80056 1.64224 2.39111 2.53642 2.82623 3.13108 3.21613 3.26986 3.31559 3.89450 3.94049 4.05219 4.27225 4.40130 4.45310 4.49109 4.62183 4.76461 4.80506 4.86418 5.09401 5.13595 5.19079 5.25765 5.32762 5.35701 5.43974 5.51204 5.65692 5.71502 5.75712 5.80902 5.83535 5.93366 6.04769 6.13002 6.27839 6.31888 6.41626 6.48300 6.93593 7.20982 7.27958 7.30118 7.57120 7.80535 7.98688 8.08792 8.64926 9.20826 9.57449 10.09825 10.78407 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.053024 B = 0.001502 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.938072 B =18635.474034 C =18734.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.041 3.959 13 N -0.505 5.505 14 C 0.053 3.947 15 C -0.125 4.125 16 C -0.123 4.123 17 H 0.081 0.919 18 C 0.134 3.866 19 N -0.730 5.730 20 C 0.515 3.485 21 O -0.513 6.513 22 C -0.055 4.055 23 C 0.216 3.784 24 N -0.460 5.460 25 C -0.026 4.026 26 C -0.056 4.056 27 N -0.567 5.567 28 H 0.417 0.583 29 C 0.050 3.950 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.080 0.920 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -29.033 -9.811 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.091 4.091 13 N -0.229 5.229 14 C -0.075 4.075 15 C -0.163 4.163 16 C -0.143 4.143 17 H 0.099 0.901 18 C 0.010 3.990 19 N -0.383 5.383 20 C 0.299 3.701 21 O -0.387 6.387 22 C -0.097 4.097 23 C -0.049 4.049 24 N -0.179 5.179 25 C -0.174 4.174 26 C -0.190 4.190 27 N -0.171 5.171 28 H 0.255 0.745 29 C -0.078 4.078 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.187 0.813 44 H 0.194 0.806 45 H 0.099 0.901 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.034 -28.590 -8.145 29.728 hybrid contribution -1.953 0.315 -1.747 2.639 sum -1.987 -28.275 -9.892 30.021 Atomic orbital electron populations 1.69605 1.05919 1.28175 1.50795 1.25244 0.95618 0.99654 0.97411 0.85926 0.78754 0.80527 0.79056 1.21016 1.19894 1.19972 1.19650 0.93326 0.82259 1.47576 0.88002 1.41854 1.09127 1.04577 1.64797 1.19750 0.88434 0.84520 0.84327 1.90507 1.13677 1.86998 1.54846 1.22118 0.93942 0.91670 1.01363 1.63250 1.25527 1.01078 1.33018 1.23029 1.00487 0.94784 0.89163 1.22865 0.97011 0.95843 1.00610 1.22663 0.98884 0.93798 0.98962 0.90108 1.21345 1.02192 0.87655 0.87793 1.45935 1.74236 1.07700 1.10423 1.20086 0.77125 0.82369 0.90547 1.90796 1.48180 1.74752 1.24929 1.19921 1.05176 0.87182 0.97372 1.22317 0.93428 0.89850 0.99264 1.70255 1.21350 1.12092 1.14160 1.22413 1.00276 0.91390 1.03365 1.22749 1.01248 0.93108 1.01900 1.43216 1.29039 1.07702 1.37117 0.74538 1.22829 0.97742 0.89505 0.97772 0.91891 0.77560 0.89427 0.93450 0.94100 0.88776 0.90331 0.91169 0.90742 0.91404 0.76635 0.87535 0.86166 0.81293 0.80561 0.90129 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C 0.44 10.51 7.58 -10.98 -0.08 10.43 16 11 O -0.58 -15.62 14.61 5.55 0.08 -15.54 16 12 C 0.04 0.72 5.05 -4.98 -0.03 0.70 16 13 N -0.50 -8.25 4.86 -232.69 -1.13 -9.38 16 14 C 0.05 0.80 5.74 -2.30 -0.01 0.79 16 15 C -0.13 -1.33 6.44 -24.59 -0.16 -1.49 16 16 C -0.12 -1.16 2.96 -88.80 -0.26 -1.42 16 17 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 18 C 0.13 1.24 4.97 -4.04 -0.02 1.22 16 19 N -0.73 -5.45 5.47 -60.29 -0.33 -5.78 16 20 C 0.52 4.95 7.82 -10.99 -0.09 4.86 16 21 O -0.51 -7.59 15.56 5.56 0.09 -7.50 16 22 C -0.05 -0.32 6.33 -29.03 -0.18 -0.51 16 23 C 0.22 1.96 6.95 -155.42 -1.08 0.88 16 24 N -0.46 -5.69 10.60 -10.81 -0.11 -5.81 16 25 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 26 C -0.06 -0.37 12.04 -16.56 -0.20 -0.57 16 27 N -0.57 -3.46 6.15 -10.23 -0.06 -3.52 16 28 H 0.42 0.97 8.96 -40.82 -0.37 0.61 16 29 C 0.05 0.61 6.46 -2.84 -0.02 0.59 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 32 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.04 0.62 7.62 -51.93 -0.40 0.22 16 35 H 0.09 1.71 7.37 -51.93 -0.38 1.33 16 36 H 0.08 0.90 7.94 -51.93 -0.41 0.48 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.83 8.00 -51.92 -0.42 0.41 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 1.81 8.47 -40.82 -0.35 1.46 16 41 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.08 0.97 7.82 -51.93 -0.41 0.57 16 46 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -38.46 385.67 -9.33 -47.79 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.73 Total: 9.11 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.58 Total: 7.02 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.97 Total: -62.77 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.46 -9.33 -47.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317536341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.893 kcal (2) G-P(sol) polarization free energy of solvation -38.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds