Wall clock time and date at job start Sat Apr 11 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00733 * 2 1 4 4 H 1.48508 * 109.47056 * 270.00347 * 3 2 1 5 5 H 1.48505 * 109.46897 * 29.99379 * 3 2 1 6 6 H 1.48495 * 109.47527 * 149.99916 * 3 2 1 7 7 C 1.38956 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08994 * 112.84786 * 45.33252 * 15 14 13 17 17 C 1.53783 * 113.61089 * 176.52727 * 15 14 13 18 18 C 1.53782 * 87.07724 * 139.98054 * 17 15 14 19 19 H 1.09005 * 113.61456 * 219.93286 * 18 17 15 20 20 N 1.46496 * 113.61716 * 89.11665 * 18 17 15 21 21 C 1.34774 * 120.00256 * 154.99642 * 20 18 17 22 22 O 1.21276 * 119.99881 * 0.02562 * 21 20 18 23 23 C 1.50702 * 120.00121 * 179.97438 * 21 20 18 24 24 C 1.50701 * 109.47184 * 180.02562 * 23 21 20 25 25 C 1.39872 * 125.89702 * 125.00539 * 24 23 21 26 26 C 1.35315 * 107.91841 * 180.02562 * 25 24 23 27 27 N 1.34946 * 107.74737 * 359.97438 * 26 25 24 28 28 H 0.96994 * 126.03877 * 180.02562 * 27 26 25 29 29 N 1.30830 * 125.90147 * 304.69496 * 24 23 21 30 30 C 1.53776 * 113.61041 * 274.13480 * 15 14 13 31 31 H 0.97004 * 119.99642 * 0.02562 * 1 2 3 32 32 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 34 34 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 35 35 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 36 36 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 37 37 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 38 38 H 1.09002 * 113.61370 * 254.52641 * 17 15 14 39 39 H 1.08996 * 113.61703 * 25.43345 * 17 15 14 40 40 H 0.97000 * 119.99876 * 334.99955 * 20 18 17 41 41 H 1.09000 * 109.47333 * 300.00774 * 23 21 20 42 42 H 1.09004 * 109.46853 * 60.00029 * 23 21 20 43 43 H 1.08002 * 126.03703 * 359.96918 * 25 24 23 44 44 H 1.07998 * 126.12379 * 180.02562 * 26 25 24 45 45 H 1.09003 * 113.61658 * 334.56812 * 30 15 14 46 46 H 1.08994 * 113.61559 * 105.47492 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0031 12 6 1.2434 -4.8629 0.0032 13 7 2.1980 -5.9796 0.0050 14 6 1.4976 -7.2709 0.0050 15 6 2.5225 -8.4070 0.0074 16 1 3.3291 -8.2476 0.7229 17 6 1.8906 -9.8064 0.0930 18 6 2.9509 -10.2611 -0.9237 19 1 2.5671 -10.9499 -1.6764 20 7 4.1940 -10.7291 -0.3057 21 6 4.9885 -11.5967 -0.9632 22 8 4.6747 -11.9897 -2.0668 23 6 6.2676 -12.0775 -0.3277 24 6 6.9652 -13.0318 -1.2625 25 6 8.2813 -12.9151 -1.7215 26 6 8.5318 -13.9641 -2.5387 27 7 7.4140 -14.7182 -2.5943 28 1 7.3018 -15.5354 -3.1045 29 7 6.4464 -14.1154 -1.7804 30 6 3.0126 -8.7974 -1.3969 31 1 -0.4850 0.8401 -0.0004 32 1 0.3532 -2.3907 0.0016 33 1 0.6171 -4.9213 -0.8870 34 1 0.6164 -4.9201 0.8930 35 1 2.8322 -5.9119 0.7868 36 1 0.8717 -7.3448 0.8944 37 1 0.8737 -7.3458 -0.8856 38 1 1.9957 -10.2738 1.0721 39 1 0.8712 -9.8494 -0.2905 40 1 4.4452 -10.4145 0.5768 41 1 6.9169 -11.2252 -0.1279 42 1 6.0389 -12.5873 0.6083 43 1 8.9747 -12.1265 -1.4690 44 1 9.4602 -14.1628 -3.0534 45 1 2.3004 -8.5640 -2.1885 46 1 4.0221 -8.4515 -1.6188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506880607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:24:11 Heat of formation + Delta-G solvation = 22.727827 kcal Electronic energy + Delta-G solvation = -26931.308826 eV Core-core repulsion = 22858.133396 eV Total energy + Delta-G solvation = -4073.175430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.50344 -40.31980 -38.64227 -38.09959 -35.20008 -33.85617 -33.45287 -32.95809 -31.20064 -30.23998 -29.23564 -28.16112 -25.84032 -25.53179 -23.78308 -22.41059 -21.88931 -21.33050 -19.85620 -19.54256 -19.01101 -18.43378 -17.85372 -17.33912 -16.24572 -16.02996 -15.60767 -15.54433 -14.97913 -14.86280 -14.59496 -14.44055 -14.06672 -13.94945 -13.84452 -13.67399 -13.55432 -13.21573 -13.15188 -12.67682 -12.52721 -12.38938 -12.11543 -11.71758 -11.53039 -11.45783 -11.02852 -10.94417 -10.92662 -10.54582 -10.38210 -10.28329 -10.19470 -10.08844 -9.67971 -9.49209 -9.17097 -9.03105 -8.42117 -8.00221 -7.93238 -6.40196 -3.80911 1.60924 2.35061 2.47884 2.57252 3.03090 3.19131 3.27535 3.33389 3.93270 4.08337 4.20234 4.27313 4.37805 4.43420 4.62213 4.68585 4.77691 4.81712 4.91619 5.03082 5.19930 5.27858 5.30350 5.38764 5.41185 5.46421 5.57544 5.59499 5.62885 5.67540 5.76444 5.85163 6.01441 6.05581 6.08163 6.13740 6.26893 6.29531 6.50223 6.95922 7.26991 7.29621 7.38473 7.56685 7.71510 8.06373 8.08325 8.63315 9.19640 9.56415 10.08071 10.77609 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.001524 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.230032 B =18365.284515 C =19293.302443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.068 3.932 15 C -0.104 4.104 16 H 0.089 0.911 17 C -0.140 4.140 18 C 0.117 3.883 19 H 0.100 0.900 20 N -0.713 5.713 21 C 0.518 3.482 22 O -0.523 6.523 23 C -0.061 4.061 24 C 0.085 3.915 25 C -0.266 4.266 26 C 0.054 3.946 27 N -0.478 5.478 28 H 0.438 0.562 29 N -0.263 5.263 30 C -0.134 4.134 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.347 0.653 36 H 0.026 0.974 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.401 0.599 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.149 0.851 44 H 0.176 0.824 45 H 0.090 0.910 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -28.414 0.727 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.061 4.061 15 C -0.123 4.123 16 H 0.108 0.892 17 C -0.179 4.179 18 C 0.012 3.988 19 H 0.118 0.882 20 N -0.365 5.365 21 C 0.303 3.697 22 O -0.397 6.397 23 C -0.102 4.102 24 C -0.083 4.083 25 C -0.296 4.296 26 C -0.093 4.093 27 N -0.186 5.186 28 H 0.282 0.718 29 N -0.087 5.087 30 C -0.172 4.172 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.166 0.834 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.235 0.765 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.167 0.833 44 H 0.193 0.807 45 H 0.108 0.892 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.185 -29.254 -0.838 30.673 hybrid contribution 0.264 1.214 1.047 1.625 sum 9.450 -28.040 0.210 29.590 Atomic orbital electron populations 1.69615 1.05937 1.28116 1.50689 1.25258 0.95630 0.99704 0.97352 0.85855 0.79199 0.80807 0.78400 1.20399 1.20957 1.19445 1.19711 0.93380 0.82273 1.47555 0.87932 1.41870 1.09192 1.04615 1.64448 1.19837 0.88397 0.84750 0.84365 1.90519 1.13779 1.87093 1.55360 1.21668 0.94396 0.91064 1.01091 1.60047 1.18834 0.99910 1.51156 1.21971 0.95126 0.88763 1.00245 1.22554 0.98261 0.93149 0.98346 0.89242 1.23352 0.98934 0.96137 0.99478 1.21919 0.84356 0.96220 0.96346 0.88213 1.45633 1.22895 1.46746 1.21244 1.20362 0.84908 0.78447 0.86010 1.90750 1.73156 1.56190 1.19617 1.20038 0.94503 0.98111 0.97596 1.21526 0.93435 0.94684 0.98645 1.21419 0.97484 1.03370 1.07279 1.22569 0.92651 0.93580 1.00492 1.46376 1.09497 1.23466 1.39256 0.71797 1.77377 1.12065 1.10390 1.08853 1.23389 1.02695 0.94224 0.96934 0.91903 0.77473 0.89695 0.94021 0.83351 0.95577 0.91000 0.91017 0.88713 0.76475 0.86655 0.87160 0.83345 0.80680 0.89167 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 11 O -0.58 -15.96 15.78 5.54 0.09 -15.87 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.63 6.13 -115.05 -0.70 -11.33 16 14 C 0.07 0.80 5.51 -3.82 -0.02 0.78 16 15 C -0.10 -1.01 3.77 -89.81 -0.34 -1.34 16 16 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.14 -1.09 7.39 -25.92 -0.19 -1.28 16 18 C 0.12 1.10 4.33 -67.03 -0.29 0.81 16 19 H 0.10 1.11 7.46 -51.93 -0.39 0.72 16 20 N -0.71 -5.88 5.26 -52.93 -0.28 -6.16 16 21 C 0.52 5.40 7.82 -10.99 -0.09 5.31 16 22 O -0.52 -7.90 15.17 5.56 0.08 -7.82 16 23 C -0.06 -0.44 6.28 -29.03 -0.18 -0.62 16 24 C 0.09 0.85 6.01 -82.41 -0.50 0.35 16 25 C -0.27 -2.14 10.72 -40.01 -0.43 -2.57 16 26 C 0.05 0.35 11.99 -17.22 -0.21 0.15 16 27 N -0.48 -3.79 7.36 30.44 0.22 -3.57 16 28 H 0.44 2.06 8.96 -182.62 -1.64 0.42 16 29 N -0.26 -3.05 12.06 33.67 0.41 -2.64 16 30 C -0.13 -1.43 7.44 -25.83 -0.19 -1.62 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.40 2.19 8.70 -40.82 -0.36 1.84 16 41 H 0.12 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -37.78 393.44 -9.41 -47.19 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.01 Total: 13.40 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.79 Total: 3.17 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.31 Total: -62.12 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.78 -9.41 -47.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506880607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.915 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds