Wall clock time and date at job start Sat Apr 11 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47452 * 2 1 4 4 H 1.08993 * 109.47280 * 305.69232 * 3 2 1 5 5 C 1.50704 * 109.47590 * 185.68896 * 3 2 1 6 6 H 1.08001 * 120.00246 * 275.01345 * 5 3 2 7 7 C 1.37875 * 119.99839 * 95.00093 * 5 3 2 8 8 N 1.31512 * 120.00222 * 184.83029 * 7 5 3 9 9 Si 1.86799 * 119.99866 * 4.83881 * 7 5 3 10 10 H 1.48500 * 109.47361 * 84.85757 * 9 7 5 11 11 H 1.48504 * 109.47093 * 204.85715 * 9 7 5 12 12 H 1.48495 * 109.47300 * 324.85501 * 9 7 5 13 13 N 1.46508 * 109.47022 * 65.69213 * 3 2 1 14 14 C 1.34766 * 119.99791 * 275.00222 * 13 3 2 15 15 O 1.21598 * 120.00566 * 359.97438 * 14 13 3 16 16 N 1.34785 * 120.00211 * 179.97438 * 14 13 3 17 17 C 1.40837 * 120.00157 * 179.97438 * 16 14 13 18 18 C 1.40237 * 126.07894 * 0.03257 * 17 16 14 19 19 N 1.30841 * 108.34179 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.36582 * 359.97438 * 19 18 17 21 21 C 1.46504 * 126.06139 * 180.26012 * 20 19 18 22 22 C 1.50693 * 109.47136 * 304.69197 * 21 20 19 23 23 O 1.21287 * 119.99790 * 359.97438 * 22 21 20 24 24 N 1.34778 * 120.00209 * 179.97438 * 22 21 20 25 25 C 1.46496 * 120.00101 * 179.97438 * 24 22 21 26 26 C 1.52999 * 117.50001 * 223.61826 * 25 24 22 27 27 C 1.53002 * 60.00342 * 252.51096 * 26 25 24 28 28 C 1.35735 * 126.07356 * 179.97438 * 17 16 14 29 29 H 1.09004 * 109.46772 * 299.99482 * 1 2 3 30 30 H 1.08994 * 109.46858 * 60.00014 * 1 2 3 31 31 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47036 * 239.99789 * 2 1 3 33 33 H 1.09002 * 109.47116 * 120.00808 * 2 1 3 34 34 H 0.97001 * 120.00011 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00101 * 95.00258 * 13 3 2 36 36 H 0.97007 * 119.99343 * 0.02562 * 16 14 13 37 37 H 1.08000 * 125.82697 * 359.95019 * 18 17 16 38 38 H 1.09002 * 109.46758 * 64.69169 * 21 20 19 39 39 H 1.08997 * 109.47094 * 184.68928 * 21 20 19 40 40 H 0.96997 * 119.99678 * 359.97438 * 24 22 21 41 41 H 1.09005 * 115.54939 * 9.32962 * 25 24 22 42 42 H 1.09004 * 117.49729 * 359.97438 * 26 25 24 43 43 H 1.09001 * 117.49802 * 145.02343 * 26 25 24 44 44 H 1.09001 * 117.50013 * 252.51169 * 27 26 25 45 45 H 1.09003 * 117.52027 * 107.47254 * 27 26 25 46 46 H 1.08000 * 126.21660 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9848 -0.8346 5 6 3.5405 1.4448 -0.1408 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5892 -1.3855 8 7 5.4206 1.4963 -1.5216 9 14 3.0420 1.9171 -2.8784 10 1 2.7756 3.3740 -2.9863 11 1 3.7404 1.4496 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6668 2.0924 1.2588 14 6 0.4510 2.6587 1.3901 15 8 -0.3361 2.6308 0.4636 16 7 0.1073 3.2563 2.5483 17 6 -1.1631 3.8486 2.6853 18 6 -2.1648 3.8905 1.7048 19 7 -3.1988 4.5216 2.1993 20 7 -2.8957 4.9047 3.5119 21 6 -3.7823 5.6303 4.4251 22 6 -4.2347 6.9116 3.7736 23 8 -3.8537 7.1914 2.6566 24 7 -5.0627 7.7467 4.4320 25 6 -5.5021 8.9925 3.7989 26 6 -5.5022 10.2593 4.6569 27 6 -6.8262 9.5964 4.2714 28 6 -1.6358 4.4795 3.7902 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 5.8253 1.5983 -2.3972 35 1 2.2947 2.1150 1.9978 36 1 0.7353 3.2789 3.2873 37 1 -2.0946 3.4733 0.7111 38 1 -4.6508 5.0132 4.6550 39 1 -3.2461 5.8604 5.3457 40 1 -5.3677 7.5227 5.3252 41 1 -5.2485 9.0987 2.7441 42 1 -5.1757 10.1656 5.6927 43 1 -5.2484 11.1992 4.1667 44 1 -7.4434 10.1003 3.5275 45 1 -7.3705 9.0664 5.0530 46 1 -1.1066 4.6181 4.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274649708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:22:35 Heat of formation + Delta-G solvation = 53.014085 kcal Electronic energy + Delta-G solvation = -28151.501513 eV Core-core repulsion = 24079.639393 eV Total energy + Delta-G solvation = -4071.862120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25269 -40.05767 -39.25800 -37.49387 -35.59944 -34.18964 -33.54466 -32.74000 -32.24479 -31.23103 -29.30882 -27.68031 -26.73740 -22.98339 -22.91772 -22.84668 -21.85458 -21.37698 -20.91099 -20.10163 -19.61026 -18.04738 -17.75062 -17.46938 -16.77535 -16.36017 -16.10839 -15.58062 -15.10473 -15.04100 -14.78261 -14.43698 -14.22000 -14.04204 -13.67903 -13.28515 -13.19622 -12.94487 -12.73744 -12.59058 -12.46422 -12.12937 -11.86123 -11.81752 -11.78971 -11.05378 -10.89891 -10.73962 -10.65907 -10.62974 -10.44410 -10.24324 -9.89068 -9.79321 -9.36983 -9.27240 -9.19763 -9.14325 -8.67478 -8.06017 -7.37969 -6.21155 -4.24696 1.80511 2.13545 2.21245 2.71696 3.02263 3.25911 3.36152 3.39132 3.39268 3.47356 3.99631 4.14761 4.23851 4.32170 4.36411 4.43279 4.46396 4.66835 4.77414 4.90986 5.08755 5.21201 5.27846 5.31233 5.40960 5.53238 5.71620 5.80818 5.98802 6.13275 6.16764 6.31222 6.48909 6.69570 6.83099 6.85468 6.99680 7.05084 7.07181 7.21071 7.27279 7.40352 7.56903 7.64272 7.77961 7.87782 8.30187 8.73952 8.82677 9.24180 9.42191 10.90303 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002069 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.710043 B =13528.439524 C =13903.982528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.253 3.747 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.715 5.715 14 C 0.697 3.303 15 O -0.586 6.586 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.053 3.947 19 N -0.262 5.262 20 N -0.375 5.375 21 C 0.132 3.868 22 C 0.500 3.500 23 O -0.498 6.498 24 N -0.706 5.706 25 C 0.081 3.919 26 C -0.193 4.193 27 C -0.189 4.189 28 C -0.009 4.009 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.389 0.611 36 H 0.402 0.598 37 H 0.210 0.790 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.401 0.599 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 11.822 19.368 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.151 3.849 4 H 0.070 0.930 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.182 1.182 13 N -0.367 5.367 14 C 0.398 3.602 15 O -0.464 6.464 16 N -0.318 5.318 17 C -0.055 4.055 18 C -0.136 4.136 19 N -0.083 5.083 20 N -0.162 5.162 21 C 0.005 3.995 22 C 0.284 3.716 23 O -0.369 6.369 24 N -0.358 5.358 25 C -0.025 4.025 26 C -0.232 4.232 27 C -0.227 4.227 28 C -0.154 4.154 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.236 0.764 37 H 0.226 0.774 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.236 0.764 41 H 0.156 0.844 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.356 12.384 17.331 30.879 hybrid contribution 0.939 -0.038 0.737 1.195 sum -21.417 12.346 18.068 30.620 Atomic orbital electron populations 1.21887 0.97287 0.98667 1.02223 1.22084 0.93808 0.99487 1.01097 1.19079 0.95199 0.88799 0.81850 0.93006 1.21007 0.88720 1.51618 0.95407 0.90405 1.24935 0.94888 0.93625 0.98860 1.69881 1.09783 1.48309 1.24515 0.86899 0.81299 0.79740 0.82069 1.19833 1.21310 1.18182 1.45896 1.13018 1.58823 1.18954 1.16074 0.83581 0.78639 0.81941 1.90751 1.51228 1.65069 1.39372 1.42119 1.14089 1.59437 1.16115 1.17511 0.88235 1.04886 0.94904 1.24676 0.89177 0.98293 1.01416 1.77462 1.23762 1.16764 0.90277 1.47487 1.11267 1.46156 1.11287 1.21218 0.95891 0.91092 0.91288 1.20780 0.78963 0.85096 0.86792 1.90837 1.53935 1.73944 1.18208 1.45298 1.49758 1.20986 1.19791 1.21599 0.99472 0.83154 0.98225 1.23439 1.00960 0.97516 1.01294 1.23387 0.91179 1.03961 1.04198 1.21607 0.87968 1.05733 1.00110 0.93017 0.93028 0.95340 0.92139 0.93131 0.92254 0.77746 0.76416 0.77426 0.87054 0.85949 0.76449 0.84403 0.88446 0.87907 0.87787 0.88397 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.57 16 2 C -0.13 -2.71 5.59 -26.74 -0.15 -2.86 16 3 C 0.25 5.93 1.89 -69.08 -0.13 5.80 16 4 H 0.05 1.34 4.73 -51.93 -0.25 1.09 16 5 C -0.53 -14.06 9.05 -34.44 -0.31 -14.37 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 9 Si 0.87 21.74 26.99 -169.99 -4.59 17.15 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.30 6.82 56.52 0.39 -5.91 16 13 N -0.72 -14.06 5.03 -59.81 -0.30 -14.36 16 14 C 0.70 13.37 7.14 -86.92 -0.62 12.75 16 15 O -0.59 -12.95 10.64 5.28 0.06 -12.90 16 16 N -0.67 -10.03 5.48 -14.39 -0.08 -10.11 16 17 C 0.05 0.78 6.90 -83.86 -0.58 0.20 16 18 C 0.05 0.94 10.84 -17.22 -0.19 0.76 16 19 N -0.26 -4.40 11.65 30.70 0.36 -4.05 16 20 N -0.37 -4.69 3.42 -62.20 -0.21 -4.90 16 21 C 0.13 0.95 7.00 -5.19 -0.04 0.91 16 22 C 0.50 4.89 7.86 -10.99 -0.09 4.81 16 23 O -0.50 -7.79 15.29 5.55 0.08 -7.71 16 24 N -0.71 -4.31 5.57 -53.80 -0.30 -4.61 16 25 C 0.08 0.56 6.43 -67.93 -0.44 0.12 16 26 C -0.19 -0.94 10.46 -26.73 -0.28 -1.22 16 27 C -0.19 -0.85 10.46 -26.73 -0.28 -1.13 16 28 C -0.01 -0.11 11.52 -16.67 -0.19 -0.30 16 29 H 0.05 1.04 5.63 -51.93 -0.29 0.75 16 30 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.39 6.65 8.61 -40.82 -0.35 6.30 16 36 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 37 H 0.21 4.05 5.91 -52.49 -0.31 3.74 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.36 8.07 -51.93 -0.42 -0.06 16 40 H 0.40 0.96 8.83 -40.82 -0.36 0.60 16 41 H 0.14 1.27 7.40 -51.93 -0.38 0.89 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -37.48 383.64 -8.01 -45.48 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.51 Total: 10.46 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.07 Total: 5.07 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 0.24 Total: -63.35 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.14 Total: -20.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.59 Total: 17.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.48 -8.01 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274649708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.498 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds