Wall clock time and date at job start Sat Apr 11 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47452 * 2 1 4 4 H 1.08993 * 109.47280 * 305.69232 * 3 2 1 5 5 C 1.50704 * 109.47590 * 185.68896 * 3 2 1 6 6 H 1.08001 * 120.00246 * 275.01345 * 5 3 2 7 7 C 1.37875 * 119.99839 * 95.00093 * 5 3 2 8 8 N 1.31512 * 120.00222 * 184.83029 * 7 5 3 9 9 Si 1.86799 * 119.99866 * 4.83881 * 7 5 3 10 10 H 1.48500 * 109.47361 * 84.85757 * 9 7 5 11 11 H 1.48504 * 109.47093 * 204.85715 * 9 7 5 12 12 H 1.48495 * 109.47300 * 324.85501 * 9 7 5 13 13 N 1.46508 * 109.47022 * 65.69213 * 3 2 1 14 14 C 1.34766 * 119.99791 * 275.00222 * 13 3 2 15 15 O 1.21598 * 120.00566 * 359.97438 * 14 13 3 16 16 N 1.34785 * 120.00211 * 179.97438 * 14 13 3 17 17 C 1.40837 * 120.00157 * 179.97438 * 16 14 13 18 18 C 1.40237 * 126.07894 * 0.03257 * 17 16 14 19 19 N 1.30841 * 108.34179 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.36582 * 359.97438 * 19 18 17 21 21 C 1.46504 * 126.06139 * 180.26012 * 20 19 18 22 22 C 1.50693 * 109.47136 * 304.69197 * 21 20 19 23 23 O 1.21287 * 119.99790 * 359.97438 * 22 21 20 24 24 N 1.34778 * 120.00209 * 179.97438 * 22 21 20 25 25 C 1.46496 * 120.00101 * 179.97438 * 24 22 21 26 26 C 1.52999 * 117.50001 * 223.61826 * 25 24 22 27 27 C 1.53002 * 60.00342 * 252.51096 * 26 25 24 28 28 C 1.35735 * 126.07356 * 179.97438 * 17 16 14 29 29 H 1.09004 * 109.46772 * 299.99482 * 1 2 3 30 30 H 1.08994 * 109.46858 * 60.00014 * 1 2 3 31 31 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47036 * 239.99789 * 2 1 3 33 33 H 1.09002 * 109.47116 * 120.00808 * 2 1 3 34 34 H 0.97001 * 120.00011 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00101 * 95.00258 * 13 3 2 36 36 H 0.97007 * 119.99343 * 0.02562 * 16 14 13 37 37 H 1.08000 * 125.82697 * 359.95019 * 18 17 16 38 38 H 1.09002 * 109.46758 * 64.69169 * 21 20 19 39 39 H 1.08997 * 109.47094 * 184.68928 * 21 20 19 40 40 H 0.96997 * 119.99678 * 359.97438 * 24 22 21 41 41 H 1.09005 * 115.54939 * 9.32962 * 25 24 22 42 42 H 1.09004 * 117.49729 * 359.97438 * 26 25 24 43 43 H 1.09001 * 117.49802 * 145.02343 * 26 25 24 44 44 H 1.09001 * 117.50013 * 252.51169 * 27 26 25 45 45 H 1.09003 * 117.52027 * 107.47254 * 27 26 25 46 46 H 1.08000 * 126.21660 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9848 -0.8346 5 6 3.5405 1.4448 -0.1408 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5892 -1.3855 8 7 5.4206 1.4963 -1.5216 9 14 3.0420 1.9171 -2.8784 10 1 2.7756 3.3740 -2.9863 11 1 3.7404 1.4496 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6668 2.0924 1.2588 14 6 0.4510 2.6587 1.3901 15 8 -0.3361 2.6308 0.4636 16 7 0.1073 3.2563 2.5483 17 6 -1.1631 3.8486 2.6853 18 6 -2.1648 3.8905 1.7048 19 7 -3.1988 4.5216 2.1993 20 7 -2.8957 4.9047 3.5119 21 6 -3.7823 5.6303 4.4251 22 6 -4.2347 6.9116 3.7736 23 8 -3.8537 7.1914 2.6566 24 7 -5.0627 7.7467 4.4320 25 6 -5.5021 8.9925 3.7989 26 6 -5.5022 10.2593 4.6569 27 6 -6.8262 9.5964 4.2714 28 6 -1.6358 4.4795 3.7902 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 5.8253 1.5983 -2.3972 35 1 2.2947 2.1150 1.9978 36 1 0.7353 3.2789 3.2873 37 1 -2.0946 3.4733 0.7111 38 1 -4.6508 5.0132 4.6550 39 1 -3.2461 5.8604 5.3457 40 1 -5.3677 7.5227 5.3252 41 1 -5.2485 9.0987 2.7441 42 1 -5.1757 10.1656 5.6927 43 1 -5.2484 11.1992 4.1667 44 1 -7.4434 10.1003 3.5275 45 1 -7.3705 9.0664 5.0530 46 1 -1.1066 4.6181 4.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274649708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:22:35 Heat of formation + Delta-G solvation = 22.494822 kcal Electronic energy + Delta-G solvation = -28152.824927 eV Core-core repulsion = 24079.639393 eV Total energy + Delta-G solvation = -4073.185534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32152 -41.00219 -40.51364 -38.07738 -37.23709 -35.57492 -34.46271 -34.26007 -33.53410 -32.78008 -30.40316 -29.34467 -27.87462 -24.72746 -23.71467 -23.28602 -23.18123 -22.21351 -21.79063 -21.41642 -21.24860 -19.63951 -18.60316 -18.36206 -18.23187 -17.49580 -17.13388 -16.82928 -16.36719 -16.14866 -15.83230 -15.56123 -15.53697 -15.15545 -14.94276 -14.74804 -14.48023 -14.12369 -13.75564 -13.71857 -13.68235 -13.65263 -13.39663 -12.91291 -12.55272 -12.52517 -12.36084 -12.34130 -11.87000 -11.82468 -11.68905 -11.51254 -11.50445 -11.17073 -11.14921 -10.91423 -10.80794 -10.25364 -9.79210 -9.71372 -8.53231 -8.36969 -6.41462 0.84063 1.29709 1.35794 1.37191 1.46408 1.46980 1.74585 1.96415 2.10496 2.29156 2.57169 2.96107 3.01128 3.53218 3.62942 3.77942 3.81498 4.01595 4.04632 4.05768 4.21441 4.28075 4.38145 4.47809 4.58040 4.67349 4.71368 4.75350 4.79232 4.89095 5.00951 5.15276 5.19336 5.26080 5.31918 5.34094 5.45960 5.47502 5.62144 5.84362 5.88248 6.05936 6.11407 6.37756 6.48550 6.64669 6.74609 7.19625 7.24501 7.35761 7.79904 8.77739 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002069 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.710043 B =13528.439524 C =13903.982528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.260 3.740 4 H 0.028 0.972 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.035 3.965 8 N -0.928 5.928 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.255 1.255 13 N -0.714 5.714 14 C 0.695 3.305 15 O -0.618 6.618 16 N -0.649 5.649 17 C 0.009 3.991 18 C 0.023 3.977 19 N -0.298 5.298 20 N -0.366 5.366 21 C 0.122 3.878 22 C 0.495 3.505 23 O -0.570 6.570 24 N -0.683 5.683 25 C 0.049 3.951 26 C -0.181 4.181 27 C -0.171 4.171 28 C 0.034 3.966 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.403 0.597 36 H 0.422 0.578 37 H 0.176 0.824 38 H 0.143 0.857 39 H 0.181 0.819 40 H 0.423 0.577 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.808 12.509 23.525 35.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.156 3.844 4 H 0.046 0.954 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.179 1.179 13 N -0.367 5.367 14 C 0.395 3.605 15 O -0.499 6.499 16 N -0.299 5.299 17 C -0.096 4.096 18 C -0.164 4.164 19 N -0.120 5.120 20 N -0.152 5.152 21 C -0.001 4.001 22 C 0.281 3.719 23 O -0.447 6.447 24 N -0.336 5.336 25 C -0.058 4.058 26 C -0.220 4.220 27 C -0.210 4.210 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.238 0.762 36 H 0.259 0.741 37 H 0.193 0.807 38 H 0.161 0.839 39 H 0.198 0.802 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -24.271 13.104 21.600 35.034 hybrid contribution 1.346 -0.097 -0.336 1.391 sum -22.925 13.008 21.264 33.866 Atomic orbital electron populations 1.21733 0.95952 0.99932 1.01162 1.21988 0.94861 0.98049 1.01234 1.18773 0.92964 0.89940 0.82762 0.95447 1.21208 0.90265 1.49961 0.94529 0.92216 1.25532 0.95660 0.94098 1.01225 1.69966 1.11071 1.50504 1.25169 0.86131 0.80141 0.79044 0.79966 1.20578 1.20418 1.17854 1.45434 1.13869 1.59248 1.18188 1.16109 0.82867 0.78726 0.82784 1.90759 1.52028 1.66124 1.40997 1.41669 1.14581 1.58376 1.15240 1.17697 0.88122 1.07861 0.95966 1.24310 0.91051 0.99801 1.01266 1.77381 1.24051 1.17694 0.92913 1.47972 1.12151 1.44786 1.10289 1.21873 0.97256 0.89576 0.91430 1.21293 0.78619 0.85988 0.86034 1.90829 1.56887 1.75670 1.21336 1.45087 1.48191 1.19996 1.20298 1.21530 1.02344 0.84582 0.97319 1.23500 1.00809 0.96138 1.01518 1.23469 0.90527 1.02772 1.04185 1.22426 0.86932 1.01463 1.00448 0.93213 0.95005 0.92769 0.93166 0.91785 0.92121 0.76202 0.74056 0.80676 0.83924 0.80181 0.73858 0.87938 0.86740 0.88083 0.87697 0.86401 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.53 71.98 0.61 -4.58 16 2 C -0.12 -5.23 5.59 30.59 0.17 -5.06 16 3 C 0.26 12.25 1.89 44.24 0.08 12.33 16 4 H 0.03 1.45 4.73 -2.39 -0.01 1.43 16 5 C -0.52 -28.04 9.05 25.60 0.23 -27.81 16 6 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 7 C 0.04 2.01 5.47 84.65 0.46 2.47 16 8 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 9 Si 0.92 45.81 26.99 68.60 1.85 47.67 16 10 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.25 -12.41 6.82 99.48 0.68 -11.73 16 13 N -0.71 -27.88 5.03 -461.40 -2.32 -30.21 16 14 C 0.69 26.65 7.14 179.05 1.28 27.92 16 15 O -0.62 -28.26 10.64 -4.03 -0.04 -28.30 16 16 N -0.65 -18.53 5.48 -317.70 -1.74 -20.28 16 17 C 0.01 0.25 6.90 37.60 0.26 0.51 16 18 C 0.02 0.84 10.84 85.33 0.92 1.77 16 19 N -0.30 -10.09 11.65 -56.78 -0.66 -10.76 16 20 N -0.37 -8.11 3.42 -350.71 -1.20 -9.31 16 21 C 0.12 1.23 7.00 85.63 0.60 1.82 16 22 C 0.49 8.78 7.86 87.65 0.69 9.47 16 23 O -0.57 -18.23 15.29 -3.05 -0.05 -18.28 16 24 N -0.68 -6.66 5.57 -442.52 -2.46 -9.12 16 25 C 0.05 0.62 6.43 44.99 0.29 0.91 16 26 C -0.18 -1.36 10.46 30.59 0.32 -1.04 16 27 C -0.17 -1.16 10.46 30.60 0.32 -0.84 16 28 C 0.03 0.67 11.52 83.49 0.96 1.63 16 29 H 0.05 1.99 5.63 -2.39 -0.01 1.98 16 30 H 0.03 1.37 7.88 -2.39 -0.02 1.35 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.40 13.41 8.61 -92.71 -0.80 12.61 16 36 H 0.42 8.33 8.84 -92.70 -0.82 7.51 16 37 H 0.18 7.46 5.91 -2.91 -0.02 7.44 16 38 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.18 -0.25 8.07 -2.39 -0.02 -0.27 16 40 H 0.42 0.27 8.83 -92.71 -0.82 -0.55 16 41 H 0.10 2.07 7.40 -2.38 -0.02 2.06 16 42 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -89.10 383.64 -0.54 -89.64 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -1.41 Total: 24.67 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.20 Total: 19.52 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -8.09 Total: -134.91 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.09 Total: -46.58 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.85 Total: 47.67 kcal Total: -89.10 -0.54 -89.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274649708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.134 kcal (2) G-P(sol) polarization free energy of solvation -89.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds