Wall clock time and date at job start Sat Apr 11 2020 04:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00038 * 2 1 4 4 C 1.52996 * 109.47173 * 124.99937 * 3 2 1 5 5 O 1.42904 * 109.47160 * 179.97438 * 4 3 2 6 6 C 1.42897 * 113.99960 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47187 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99840 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46914 * 89.99879 * 21 19 17 23 23 H 1.48499 * 109.47250 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.47079 * 330.00278 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08001 * 120.00363 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99954 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99954 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47465 * 4.99622 * 3 2 1 32 32 H 1.09002 * 109.47018 * 245.00010 * 3 2 1 33 33 H 1.09002 * 109.47376 * 60.00230 * 4 3 2 34 34 H 1.09002 * 109.47208 * 299.99957 * 4 3 2 35 35 H 1.08999 * 109.47338 * 59.99904 * 6 5 4 36 36 H 1.09004 * 109.47249 * 299.99869 * 6 5 4 37 37 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 38 38 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 39 39 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 40 40 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 41 41 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 42 42 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 43 43 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 44 44 H 0.96995 * 120.00211 * 180.02562 * 20 19 17 45 45 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 46 46 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7499 2.5704 1.1813 6 6 4.6894 2.6991 2.2502 7 6 5.3815 4.0343 2.1528 8 8 5.0984 4.8000 1.2559 9 7 6.3158 4.3770 3.0618 10 6 7.1822 5.5407 3.3026 11 6 8.1756 4.5929 3.9889 12 7 8.7929 5.1429 5.1983 13 6 8.2634 5.1118 6.4431 14 6 9.1606 5.7250 7.2499 15 6 9.0354 5.9437 8.7357 16 7 9.7253 4.8653 9.4479 17 6 9.7462 4.8527 10.8170 18 1 9.2537 5.6376 11.3718 19 6 10.4003 3.8312 11.4918 20 7 10.4200 3.8188 12.8079 21 14 11.2528 2.4740 10.5323 22 1 12.6608 2.8644 10.2675 23 1 11.2279 1.2176 11.3236 24 1 10.5473 2.2611 9.2431 25 7 10.1781 6.1032 6.4681 26 7 9.9297 5.7435 5.2584 27 6 6.9163 3.7525 4.2501 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4772 1.2356 2.1130 35 1 5.4284 1.9007 2.1827 36 1 4.1663 2.6302 3.2040 37 1 7.5709 5.9891 2.3883 38 1 6.7447 6.2749 3.9790 39 1 8.8909 4.1277 3.3106 40 1 7.3163 4.6823 6.7346 41 1 9.4850 6.9004 9.0013 42 1 7.9817 5.9475 9.0148 43 1 10.1679 4.1605 8.9496 44 1 10.8774 3.1052 13.2794 45 1 6.4086 4.0104 5.1795 46 1 7.0780 2.6799 4.1420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105380607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:22:47 Heat of formation + Delta-G solvation = 110.418925 kcal Electronic energy + Delta-G solvation = -27163.016671 eV Core-core repulsion = 23093.643812 eV Total energy + Delta-G solvation = -4069.372859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33775 -41.03153 -39.15116 -37.92124 -35.51393 -35.26848 -33.74047 -31.98905 -30.97823 -30.42140 -29.80955 -27.69173 -26.86159 -26.10970 -24.13640 -23.54964 -22.49696 -21.38538 -20.89599 -20.41748 -19.67477 -18.34653 -17.86897 -17.49462 -17.29131 -16.98052 -16.36281 -16.21202 -15.73127 -15.35097 -14.92032 -14.60928 -14.52389 -14.32464 -14.06668 -13.90971 -13.54905 -13.41312 -13.34754 -13.04084 -12.83692 -12.74652 -12.17200 -12.16321 -11.92357 -11.78586 -11.64986 -11.55732 -11.18597 -10.91690 -10.70707 -10.38584 -10.31973 -10.21211 -10.07099 -9.93319 -9.62352 -9.52011 -9.12392 -8.93440 -7.27223 -5.78767 -3.14883 1.49283 1.54915 1.70896 1.91961 2.36307 2.65931 3.08755 3.21749 3.35634 3.41302 3.44900 3.68118 3.97884 4.13149 4.35242 4.43010 4.47134 4.50653 4.52899 4.57426 4.58128 4.63899 4.64472 4.76788 4.83092 4.87733 4.93102 5.00452 5.13018 5.26129 5.27085 5.39616 5.45502 5.49194 5.60643 5.68241 6.05848 6.16367 6.17053 6.43400 6.48912 6.49003 6.61410 6.88263 7.49654 7.95391 8.39697 8.58992 9.17553 9.89974 10.09660 11.39266 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.001871 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.603413 B =14964.683490 C =16371.047478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.365 6.365 6 C 0.053 3.947 7 C 0.552 3.448 8 O -0.506 6.506 9 N -0.647 5.647 10 C 0.104 3.896 11 C 0.111 3.889 12 N -0.293 5.293 13 C -0.046 4.046 14 C -0.006 4.006 15 C 0.237 3.763 16 N -0.749 5.749 17 C -0.245 4.245 18 H 0.094 0.906 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.250 5.250 26 N -0.087 5.087 27 C 0.094 3.906 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.191 0.809 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.106 0.894 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.431 -7.140 -26.414 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C -0.130 4.130 4 C -0.011 4.011 5 O -0.284 6.284 6 C -0.027 4.027 7 C 0.341 3.659 8 O -0.379 6.379 9 N -0.386 5.386 10 C -0.020 4.020 11 C 0.007 3.993 12 N -0.087 5.087 13 C -0.196 4.196 14 C -0.144 4.144 15 C 0.108 3.892 16 N -0.396 5.396 17 C -0.374 4.374 18 H 0.111 0.889 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.118 5.118 26 N -0.065 5.065 27 C -0.030 4.030 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.168 0.832 40 H 0.208 0.792 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.124 0.876 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.638 -6.093 -27.812 32.977 hybrid contribution -0.258 -1.796 0.226 1.829 sum -16.896 -7.889 -27.586 33.297 Atomic orbital electron populations 1.23943 0.95896 1.02214 1.00078 1.22781 0.96042 0.97878 1.00820 1.20637 0.97896 0.96107 0.98380 1.22545 0.94038 0.85611 0.98934 1.87980 1.54212 1.38003 1.48186 1.22059 0.93311 0.94855 0.92464 1.19775 0.77365 0.88350 0.80387 1.90786 1.61448 1.52715 1.32930 1.49128 1.40455 1.21259 1.27789 1.23383 0.86880 0.90369 1.01328 1.23384 0.94192 0.96558 0.85158 1.47022 1.14817 1.39212 1.07665 1.23383 1.03758 1.08392 0.84027 1.22559 0.91503 1.01268 0.99034 1.18937 0.96883 0.93228 0.80143 1.42643 1.65772 1.27134 1.04012 1.19038 1.29448 1.08703 0.80255 0.88862 1.24632 1.00417 0.98574 0.95208 1.69695 1.48029 1.34702 1.05544 0.86551 0.80255 0.82595 0.79096 1.20952 1.21728 1.20635 1.75150 1.22810 1.18242 0.95561 1.78335 0.99687 1.11894 1.16612 1.23505 0.89257 1.00178 0.90104 0.88168 0.88338 0.87083 0.90404 0.89880 0.92746 0.92711 0.89841 0.89780 0.88247 0.88356 0.83189 0.79191 0.93338 0.93535 0.80494 0.93005 0.87628 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 14.32 29.01 0.42 -0.41 16 2 C -0.16 -0.74 9.52 -36.03 -0.34 -1.08 16 3 C -0.09 -0.53 6.03 -27.89 -0.17 -0.69 16 4 C 0.07 0.37 5.92 37.16 0.22 0.59 16 5 O -0.37 -3.21 9.88 -55.14 -0.54 -3.75 16 6 C 0.05 0.33 6.25 36.01 0.22 0.56 16 7 C 0.55 5.11 8.15 -10.98 -0.09 5.02 16 8 O -0.51 -7.10 17.27 -14.35 -0.25 -7.34 16 9 N -0.65 -4.45 3.69 -185.01 -0.68 -5.13 16 10 C 0.10 0.72 8.42 -8.50 -0.07 0.65 16 11 C 0.11 0.75 5.34 -67.69 -0.36 0.39 16 12 N -0.29 -3.28 3.56 -54.46 -0.19 -3.47 16 13 C -0.05 -0.55 10.72 -17.04 -0.18 -0.73 16 14 C -0.01 -0.10 6.62 -82.78 -0.55 -0.65 16 15 C 0.24 4.48 6.82 -5.19 -0.04 4.45 16 16 N -0.75 -17.69 5.40 -61.09 -0.33 -18.02 16 17 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 21 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 25 N -0.25 -4.52 12.41 33.29 0.41 -4.11 16 26 N -0.09 -1.33 13.16 60.35 0.79 -0.53 16 27 C 0.09 0.42 7.77 -8.43 -0.07 0.35 16 28 H 0.10 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.10 0.42 7.84 -52.49 -0.41 0.01 16 30 H 0.11 0.41 8.06 -52.49 -0.42 -0.01 16 31 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.15 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.19 1.56 6.78 -52.49 -0.36 1.20 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.36 8.61 5.52 -40.82 -0.23 8.39 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.11 0.38 6.38 -51.93 -0.33 0.05 16 46 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -38.03 396.00 -6.84 -44.86 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.82 Total: 0.64 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.26 Total: 1.59 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.78 Total: -59.37 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.79 Total: -11.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.03 -6.84 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105380607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.282 kcal (2) G-P(sol) polarization free energy of solvation -38.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds