Wall clock time and date at job start Sat Apr 11 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35499 * 126.98128 * 2 1 4 4 N 1.30518 * 107.30956 * 180.22883 * 3 2 1 5 5 N 1.28597 * 109.67026 * 359.77278 * 4 3 2 6 6 C 1.30511 * 109.67772 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.35249 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47025 * 90.01840 * 7 6 5 9 9 C 1.46287 * 118.72851 * 270.00408 * 8 7 6 10 10 C 1.52454 * 109.56698 * 164.06155 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.36564 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42568 * 112.70684 * 44.97938 * 10 9 8 25 25 C 1.43063 * 112.97120 * 296.16464 * 24 10 9 26 26 C 1.33715 * 118.72208 * 90.00652 * 8 7 6 27 27 O 1.21274 * 118.36696 * 3.32099 * 26 8 7 28 28 H 1.08998 * 109.46783 * 270.14518 * 1 2 3 29 29 H 1.08994 * 109.47491 * 30.15358 * 1 2 3 30 30 H 1.09003 * 109.46935 * 150.15313 * 1 2 3 31 31 H 1.08004 * 126.34232 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46763 * 330.02253 * 7 6 5 33 33 H 1.08999 * 109.47256 * 210.02396 * 7 6 5 34 34 H 1.09005 * 109.45808 * 44.03571 * 9 8 7 35 35 H 1.08996 * 109.45672 * 284.08837 * 9 8 7 36 36 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 37 37 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 38 38 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 39 39 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 44 44 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 45 45 H 1.09005 * 109.34481 * 167.37418 * 25 24 10 46 46 H 1.08999 * 109.34763 * 286.92047 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6431 -0.0050 5 7 3.5090 -0.6429 -0.0033 6 6 2.2802 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0055 8 7 1.7130 -2.9924 1.3877 9 6 2.8772 -3.5843 2.0467 10 6 2.6434 -3.6296 3.5525 11 6 3.0662 -2.3602 4.2924 12 7 3.5937 -3.2287 5.3629 13 6 4.8899 -2.7370 5.8488 14 6 5.2853 -3.5042 7.1121 15 6 6.6147 -2.9994 7.6110 16 1 7.1263 -2.2100 7.0803 17 6 7.1750 -3.5410 8.7484 18 7 6.5519 -4.5020 9.3949 19 14 8.8192 -2.9099 9.3711 20 1 8.7087 -1.4617 9.6804 21 1 9.2007 -3.6513 10.6000 22 1 9.8558 -3.1155 8.3277 23 6 3.7754 -4.2825 4.3456 24 8 1.3414 -4.1000 3.8934 25 6 0.2976 -3.2368 3.4330 26 6 0.5306 -2.8606 1.9980 27 8 -0.4003 -2.4154 1.3608 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8885 -0.5162 30 1 -0.3633 -0.8914 -0.5115 31 1 1.9701 2.1170 0.0004 32 1 2.5940 -3.1299 -0.5106 33 1 0.8889 -2.6192 -0.5046 34 1 3.7602 -2.9813 1.8344 35 1 3.0306 -4.5965 1.6726 36 1 2.2264 -1.7415 4.6090 37 1 3.8381 -1.7916 3.7740 38 1 4.8124 -1.6743 6.0784 39 1 5.6474 -2.8883 5.0798 40 1 5.3627 -4.5670 6.8825 41 1 4.5278 -3.3529 7.8811 42 1 6.9463 -4.8833 10.1949 43 1 4.7409 -4.2383 3.8417 44 1 3.5328 -5.2818 4.7070 45 1 -0.6602 -3.7496 3.5210 46 1 0.2791 -2.3346 4.0444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:03 Heat of formation + Delta-G solvation = 62.097164 kcal Electronic energy + Delta-G solvation = -29762.133979 eV Core-core repulsion = 25690.665732 eV Total energy + Delta-G solvation = -4071.468248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.43496 -41.54583 -39.73748 -36.92974 -36.16083 -35.29273 -33.43343 -31.93852 -31.15831 -29.04526 -28.75648 -27.93441 -26.28540 -25.93774 -25.70012 -23.33769 -22.64735 -21.72033 -20.75018 -20.18970 -18.82734 -17.83263 -17.57452 -17.29841 -16.61769 -16.34304 -16.24076 -16.01214 -15.46998 -15.19268 -15.04946 -14.63850 -14.41715 -14.33211 -14.00918 -13.81548 -13.67412 -13.35106 -13.06316 -12.78759 -12.66310 -12.55470 -12.08194 -11.88739 -11.82376 -11.70533 -11.15181 -10.97478 -10.85506 -10.68030 -10.53471 -10.50467 -10.34857 -9.91643 -9.82334 -9.51537 -9.42145 -9.34932 -9.10435 -8.43999 -8.32471 -5.98847 -4.02068 1.32829 1.97332 2.21539 2.31869 2.74877 3.24505 3.34195 3.38566 3.40966 3.81606 3.89357 4.12249 4.17414 4.23960 4.31301 4.45769 4.48942 4.52579 4.71011 4.86557 4.90775 5.04442 5.08631 5.13306 5.14419 5.19228 5.36797 5.38523 5.41686 5.52860 5.55387 5.67738 5.71442 5.73958 5.80341 6.01852 6.24109 6.47623 6.62684 6.70943 6.91589 6.98946 7.31317 7.52485 7.73102 7.86762 8.06429 8.41679 8.42004 9.05086 9.61764 11.12329 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002733 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.549077 B =10242.121138 C =11365.605667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.465 5.465 3 C 0.150 3.850 4 N -0.295 5.295 5 N -0.280 5.280 6 C 0.152 3.848 7 C 0.196 3.804 8 N -0.594 5.594 9 C 0.099 3.901 10 C 0.064 3.936 11 C -0.023 4.023 12 N -0.455 5.455 13 C 0.026 3.974 14 C 0.035 3.965 15 C -0.525 4.525 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.028 3.972 24 O -0.325 6.325 25 C 0.051 3.949 26 C 0.495 3.505 27 O -0.549 6.549 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.218 0.782 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.017 0.983 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.134 0.866 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.168 5.290 -22.215 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.155 5.155 3 C -0.137 4.137 4 N -0.135 5.135 5 N -0.122 5.122 6 C -0.117 4.117 7 C 0.071 3.929 8 N -0.326 5.326 9 C -0.024 4.024 10 C 0.023 3.977 11 C -0.152 4.152 12 N -0.177 5.177 13 C -0.101 4.101 14 C -0.003 4.003 15 C -0.564 4.564 16 H 0.071 0.929 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.101 4.101 24 O -0.243 6.243 25 C -0.029 4.029 26 C 0.283 3.717 27 O -0.428 6.428 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.235 0.765 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.557 5.108 -21.619 27.120 hybrid contribution 0.102 1.045 -0.274 1.085 sum -15.455 6.152 -21.894 27.496 Atomic orbital electron populations 1.22192 0.74441 1.04875 1.04918 1.46236 1.09668 1.06564 1.53020 1.26506 0.87226 0.95063 1.04952 1.74289 1.18033 1.03124 1.18030 1.74264 1.16886 1.03438 1.17632 1.25214 0.87618 0.92755 1.06098 1.19706 1.04000 0.84997 0.84191 1.47536 1.11412 1.60081 1.13613 1.22193 0.88521 0.99885 0.91764 1.22607 0.85935 0.98053 0.91099 1.24330 1.00903 0.95811 0.94161 1.69139 1.24322 1.04243 1.19982 1.22946 0.87132 1.00042 1.00021 1.18945 0.95789 0.95046 0.90494 1.21164 1.04928 1.20116 1.10222 0.92859 1.24993 0.97575 0.95034 0.96639 1.69968 1.38683 1.25935 1.18520 0.86659 0.84160 0.78965 0.78212 1.20248 1.21251 1.20233 1.23826 0.94561 0.99917 0.91834 1.88184 1.12370 1.45965 1.77751 1.22741 0.93586 0.97628 0.88896 1.21131 0.82081 0.77675 0.90767 1.90657 1.40748 1.46464 1.64949 0.89587 0.89497 0.88369 0.76531 0.86518 0.87413 0.88424 0.89445 0.90134 0.90555 0.92095 0.94626 0.96500 0.95786 0.92907 0.89426 0.88230 0.84870 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 9.62 59.85 0.58 1.03 16 2 N -0.46 -4.06 3.15 -122.69 -0.39 -4.44 16 3 C 0.15 1.39 12.74 -89.94 -1.15 0.25 16 4 N -0.29 -3.92 12.21 29.69 0.36 -3.56 16 5 N -0.28 -3.74 12.21 32.80 0.40 -3.34 16 6 C 0.15 1.57 7.61 -154.99 -1.18 0.39 16 7 C 0.20 1.59 5.68 -5.19 -0.03 1.56 16 8 N -0.59 -5.52 2.82 -176.10 -0.50 -6.01 16 9 C 0.10 0.95 5.90 -4.44 -0.03 0.92 16 10 C 0.06 0.78 1.22 -91.03 -0.11 0.67 16 11 C -0.02 -0.32 6.86 -7.27 -0.05 -0.37 16 12 N -0.45 -8.07 6.33 -244.69 -1.55 -9.62 16 13 C 0.03 0.54 4.75 -3.83 -0.02 0.52 16 14 C 0.03 0.91 5.30 -27.88 -0.15 0.76 16 15 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.03 0.40 7.15 -7.28 -0.05 0.35 16 24 O -0.33 -4.09 10.68 -35.23 -0.38 -4.47 16 25 C 0.05 0.50 6.68 35.75 0.24 0.74 16 26 C 0.49 4.99 7.57 -11.72 -0.09 4.91 16 27 O -0.55 -5.90 13.31 5.56 0.07 -5.83 16 28 H 0.09 0.58 7.51 -51.93 -0.39 0.19 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.58 6.46 -51.93 -0.34 0.24 16 31 H 0.22 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.12 0.74 8.04 -51.93 -0.42 0.33 16 33 H 0.11 0.77 6.26 -51.93 -0.32 0.44 16 34 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.12 7.10 -51.93 -0.37 0.75 16 37 H 0.08 1.08 7.67 -51.93 -0.40 0.68 16 38 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 39 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 1.16 7.38 -51.93 -0.38 0.77 16 44 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.09 0.88 7.24 -51.93 -0.38 0.50 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -35.71 374.38 -9.76 -45.47 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.70 Total: -2.38 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.44 Total: -1.92 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.93 Total: -53.26 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.30 Total: -10.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.71 -9.76 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.571 kcal (2) G-P(sol) polarization free energy of solvation -35.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds