Wall clock time and date at job start Sat Apr 11 2020 04:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35499 * 126.98128 * 2 1 4 4 N 1.30518 * 107.30956 * 180.22883 * 3 2 1 5 5 N 1.28597 * 109.67026 * 359.77278 * 4 3 2 6 6 C 1.30511 * 109.67772 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.35249 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47025 * 90.01840 * 7 6 5 9 9 C 1.46287 * 118.72851 * 270.00408 * 8 7 6 10 10 C 1.52454 * 109.56698 * 164.06155 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.36564 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42568 * 112.70684 * 44.97938 * 10 9 8 25 25 C 1.43063 * 112.97120 * 296.16464 * 24 10 9 26 26 C 1.33715 * 118.72208 * 90.00652 * 8 7 6 27 27 O 1.21274 * 118.36696 * 3.32099 * 26 8 7 28 28 H 1.08998 * 109.46783 * 270.14518 * 1 2 3 29 29 H 1.08994 * 109.47491 * 30.15358 * 1 2 3 30 30 H 1.09003 * 109.46935 * 150.15313 * 1 2 3 31 31 H 1.08004 * 126.34232 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46763 * 330.02253 * 7 6 5 33 33 H 1.08999 * 109.47256 * 210.02396 * 7 6 5 34 34 H 1.09005 * 109.45808 * 44.03571 * 9 8 7 35 35 H 1.08996 * 109.45672 * 284.08837 * 9 8 7 36 36 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 37 37 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 38 38 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 39 39 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 44 44 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 45 45 H 1.09005 * 109.34481 * 167.37418 * 25 24 10 46 46 H 1.08999 * 109.34763 * 286.92047 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6431 -0.0050 5 7 3.5090 -0.6429 -0.0033 6 6 2.2802 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0055 8 7 1.7130 -2.9924 1.3877 9 6 2.8772 -3.5843 2.0467 10 6 2.6434 -3.6296 3.5525 11 6 3.0662 -2.3602 4.2924 12 7 3.5937 -3.2287 5.3629 13 6 4.8899 -2.7370 5.8488 14 6 5.2853 -3.5042 7.1121 15 6 6.6147 -2.9994 7.6110 16 1 7.1263 -2.2100 7.0803 17 6 7.1750 -3.5410 8.7484 18 7 6.5519 -4.5020 9.3949 19 14 8.8192 -2.9099 9.3711 20 1 8.7087 -1.4617 9.6804 21 1 9.2007 -3.6513 10.6000 22 1 9.8558 -3.1155 8.3277 23 6 3.7754 -4.2825 4.3456 24 8 1.3414 -4.1000 3.8934 25 6 0.2976 -3.2368 3.4330 26 6 0.5306 -2.8606 1.9980 27 8 -0.4003 -2.4154 1.3608 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8885 -0.5162 30 1 -0.3633 -0.8914 -0.5115 31 1 1.9701 2.1170 0.0004 32 1 2.5940 -3.1299 -0.5106 33 1 0.8889 -2.6192 -0.5046 34 1 3.7602 -2.9813 1.8344 35 1 3.0306 -4.5965 1.6726 36 1 2.2264 -1.7415 4.6090 37 1 3.8381 -1.7916 3.7740 38 1 4.8124 -1.6743 6.0784 39 1 5.6474 -2.8883 5.0798 40 1 5.3627 -4.5670 6.8825 41 1 4.5278 -3.3529 7.8811 42 1 6.9463 -4.8833 10.1949 43 1 4.7409 -4.2383 3.8417 44 1 3.5328 -5.2818 4.7070 45 1 -0.6602 -3.7496 3.5210 46 1 0.2791 -2.3346 4.0444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:02 Heat of formation + Delta-G solvation = 36.236690 kcal Electronic energy + Delta-G solvation = -29763.255374 eV Core-core repulsion = 25690.665732 eV Total energy + Delta-G solvation = -4072.589642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.16765 -42.51582 -40.71350 -37.99628 -36.92152 -35.96402 -35.47282 -33.10942 -32.46869 -30.34351 -29.54600 -28.50630 -27.58519 -27.12384 -26.72400 -24.91557 -23.39380 -22.76379 -22.00157 -21.39341 -19.73636 -18.72699 -18.53798 -18.22454 -18.06542 -17.30597 -17.07556 -16.99241 -16.58954 -16.26390 -16.19826 -16.01552 -15.59656 -15.29211 -14.98197 -14.78846 -14.47335 -14.34856 -14.16956 -13.89741 -13.66662 -13.46219 -13.36479 -13.27784 -13.17095 -12.74987 -12.63038 -12.56547 -12.45718 -11.97175 -11.74423 -11.44527 -11.42786 -11.32545 -11.19583 -11.15806 -10.71423 -10.55742 -10.30176 -10.12222 -9.78394 -8.20288 -6.32532 0.63398 1.23077 1.40077 1.43259 1.51238 1.55629 1.62015 1.97082 2.30226 2.40087 2.89362 3.09275 3.12838 3.18774 3.24042 3.52417 3.67119 3.85544 3.91810 3.97323 4.09966 4.13437 4.24359 4.26823 4.32529 4.37810 4.41206 4.45727 4.50300 4.53522 4.58854 4.64057 4.69912 4.75714 4.89395 5.02053 5.03779 5.11409 5.28453 5.44398 5.69304 5.75000 5.79047 5.87456 6.05573 6.10518 6.25322 6.75815 6.84563 7.36918 7.65625 8.91624 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002733 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.549077 B =10242.121138 C =11365.605667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.465 5.465 3 C 0.161 3.839 4 N -0.346 5.346 5 N -0.319 5.319 6 C 0.151 3.849 7 C 0.198 3.802 8 N -0.592 5.592 9 C 0.107 3.893 10 C 0.084 3.916 11 C -0.018 4.018 12 N -0.485 5.485 13 C 0.045 3.955 14 C 0.043 3.957 15 C -0.548 4.548 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.023 3.977 24 O -0.343 6.343 25 C 0.048 3.952 26 C 0.494 3.506 27 O -0.555 6.555 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.256 0.744 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.045 0.955 40 H -0.008 1.008 41 H -0.013 1.013 42 H 0.264 0.736 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.642 6.173 -23.941 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.154 5.154 3 C -0.127 4.127 4 N -0.186 5.186 5 N -0.160 5.160 6 C -0.120 4.120 7 C 0.073 3.927 8 N -0.324 5.324 9 C -0.016 4.016 10 C 0.043 3.957 11 C -0.147 4.147 12 N -0.207 5.207 13 C -0.083 4.083 14 C 0.006 3.994 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.106 4.106 24 O -0.261 6.261 25 C -0.030 4.030 26 C 0.283 3.717 27 O -0.435 6.435 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.272 0.728 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.010 0.990 41 H 0.006 0.994 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.169 0.831 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.045 5.996 -23.369 28.974 hybrid contribution 0.120 0.776 0.266 0.829 sum -15.925 6.772 -23.103 28.866 Atomic orbital electron populations 1.22359 0.72613 1.06531 1.04795 1.46448 1.10668 1.06012 1.52300 1.27218 0.86331 0.96606 1.02563 1.74189 1.20416 1.03504 1.20461 1.74157 1.18699 1.03847 1.19321 1.25542 0.87287 0.93879 1.05244 1.19911 1.05194 0.84075 0.83521 1.47512 1.10966 1.59830 1.14108 1.22103 0.88495 1.01313 0.89644 1.22329 0.85348 0.95519 0.92493 1.24322 1.00726 0.96447 0.93205 1.69030 1.22579 1.06427 1.22655 1.22558 0.89186 0.98736 0.97850 1.18759 0.94317 0.94296 0.92075 1.21613 1.05878 1.20368 1.10733 0.92131 1.25976 1.01756 0.95086 0.96823 1.70112 1.40680 1.27267 1.19055 0.85492 0.79129 0.78578 0.77789 1.19287 1.20759 1.18952 1.23894 0.96469 0.98749 0.91507 1.88160 1.12813 1.46741 1.78361 1.22917 0.93499 0.97641 0.88988 1.21090 0.82277 0.77660 0.90679 1.90658 1.40954 1.46839 1.65006 0.90464 0.86338 0.88322 0.72793 0.84750 0.86191 0.88477 0.87073 0.90062 0.90278 0.92581 0.93660 0.98955 0.99444 0.92706 0.88015 0.89080 0.83055 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.62 127.77 1.23 1.92 16 2 N -0.46 -7.15 3.15 -542.08 -1.71 -8.86 16 3 C 0.16 2.69 12.74 180.11 2.30 4.99 16 4 N -0.35 -8.99 12.21 -59.99 -0.73 -9.72 16 5 N -0.32 -8.28 12.21 -50.15 -0.61 -8.90 16 6 C 0.15 2.88 7.61 137.98 1.05 3.93 16 7 C 0.20 2.75 5.68 85.63 0.49 3.23 16 8 N -0.59 -9.70 2.82 -830.04 -2.34 -12.04 16 9 C 0.11 1.82 5.90 86.24 0.51 2.33 16 10 C 0.08 1.95 1.22 -11.06 -0.01 1.93 16 11 C -0.02 -0.49 6.86 83.69 0.57 0.08 16 12 N -0.48 -17.43 6.33 -928.83 -5.88 -23.31 16 13 C 0.04 1.89 4.75 86.30 0.41 2.30 16 14 C 0.04 2.35 5.30 29.85 0.16 2.50 16 15 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 0.10 5.46 84.66 0.46 0.56 16 18 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 C 0.02 0.65 7.15 83.68 0.60 1.25 16 24 O -0.34 -8.22 10.68 -148.98 -1.59 -9.81 16 25 C 0.05 0.88 6.68 71.07 0.48 1.35 16 26 C 0.49 8.95 7.57 87.65 0.66 9.61 16 27 O -0.56 -10.66 13.31 -3.01 -0.04 -10.70 16 28 H 0.08 0.87 7.51 -2.39 -0.02 0.85 16 29 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.10 0.90 6.46 -2.39 -0.02 0.88 16 31 H 0.26 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.13 1.38 8.04 -2.39 -0.02 1.36 16 33 H 0.12 1.40 6.26 -2.39 -0.01 1.38 16 34 H 0.10 1.74 7.86 -2.38 -0.02 1.72 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 2.22 7.10 -2.38 -0.02 2.20 16 37 H 0.08 2.17 7.67 -2.39 -0.02 2.16 16 38 H 0.06 2.38 8.08 -2.38 -0.02 2.36 16 39 H 0.05 1.80 7.30 -2.39 -0.02 1.78 16 40 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 43 H 0.10 2.61 7.38 -2.39 -0.02 2.59 16 44 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.15 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.09 1.68 7.24 -2.39 -0.02 1.66 16 Total: -1.00 -79.43 374.38 -0.47 -79.90 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.99 Total: 9.56 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 9.13 Total: 4.58 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -10.99 Total: -120.26 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.63 Total: -20.52 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -79.43 -0.47 -79.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.136 kcal (2) G-P(sol) polarization free energy of solvation -79.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds