Wall clock time and date at job start Sat Apr 11 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00214 * 2 1 4 4 C 1.53008 * 109.46779 * 66.04950 * 3 2 1 5 5 N 1.46497 * 109.47325 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00222 * 179.97438 * 5 4 3 7 7 O 1.21616 * 119.99669 * 0.02562 * 6 5 4 8 8 C 1.47325 * 119.99797 * 179.97438 * 6 5 4 9 9 C 1.36297 * 126.22487 * 180.02562 * 8 6 5 10 10 N 1.35752 * 106.91853 * 179.97438 * 9 8 6 11 11 C 1.35686 * 107.69288 * 0.17648 * 10 9 8 12 12 N 1.30599 * 108.91063 * 359.76482 * 11 10 9 13 13 C 1.51599 * 109.81640 * 179.77955 * 11 10 9 14 14 C 1.54498 * 104.28182 * 343.35499 * 13 11 10 15 15 C 1.47077 * 141.30415 * 180.23971 * 10 9 8 16 16 C 1.46904 * 110.99762 * 236.05268 * 2 1 3 17 17 C 1.50699 * 109.46906 * 293.95028 * 16 2 1 18 18 O 1.21289 * 120.00300 * 0.02562 * 17 16 2 19 19 N 1.34778 * 119.99955 * 180.02562 * 17 16 2 20 20 C 1.37099 * 120.00176 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99723 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00332 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00400 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46979 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47212 * 119.99983 * 24 22 20 27 27 H 1.48494 * 109.47544 * 240.00421 * 24 22 20 28 28 H 1.09005 * 109.46880 * 59.99300 * 1 2 3 29 29 H 1.08999 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46786 * 299.99654 * 1 2 3 31 31 H 1.08993 * 109.47308 * 306.05086 * 3 2 1 32 32 H 1.08993 * 109.47470 * 186.04347 * 3 2 1 33 33 H 1.09001 * 109.47242 * 59.99699 * 4 3 2 34 34 H 1.09006 * 109.46826 * 300.00200 * 4 3 2 35 35 H 0.97003 * 119.99684 * 359.97438 * 5 4 3 36 36 H 1.08002 * 126.53770 * 359.97438 * 9 8 6 37 37 H 1.08999 * 110.46790 * 224.65557 * 13 11 10 38 38 H 1.08997 * 110.57762 * 102.11185 * 13 11 10 39 39 H 1.09002 * 110.94401 * 267.21567 * 14 13 11 40 40 H 1.09003 * 110.94668 * 143.51619 * 14 13 11 41 41 H 1.08997 * 110.22675 * 78.09552 * 15 10 9 42 42 H 1.08992 * 110.22293 * 316.14301 * 15 10 9 43 43 H 1.08991 * 109.47456 * 53.95397 * 16 2 1 44 44 H 1.09004 * 109.46782 * 173.95472 * 16 2 1 45 45 H 0.97001 * 119.99797 * 0.02562 * 19 17 16 46 46 H 0.97004 * 120.00448 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3184 5 7 2.1571 3.4248 1.3188 6 6 1.9559 4.2238 2.3853 7 8 1.3384 3.8094 3.3477 8 6 2.4849 5.5988 2.3859 9 6 2.3571 6.5106 3.3908 10 7 2.9878 7.6408 2.9814 11 6 3.4855 7.4089 1.7406 12 7 3.1870 6.1878 1.3863 13 6 4.1980 8.6470 1.2329 14 6 3.6944 9.7810 2.1534 15 6 3.3044 9.0054 3.4297 16 6 1.9954 -0.7659 -1.1377 17 6 1.6369 -2.2203 -0.9731 18 8 1.0047 -2.5832 -0.0036 19 7 2.0188 -3.1180 -1.9030 20 6 1.6923 -4.4411 -1.7535 21 1 1.1286 -4.7640 -0.8907 22 6 2.0855 -5.3664 -2.7125 23 7 2.7709 -4.9734 -3.7626 24 14 1.6399 -7.1690 -2.5092 25 1 0.8709 -7.3500 -1.2517 26 1 0.8130 -7.6076 -3.6621 27 1 2.8810 -7.9824 -2.4523 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.5612 1.9273 -0.8308 32 1 3.0797 1.3444 -0.1082 33 1 2.0659 1.5014 2.1493 34 1 0.5472 2.0843 1.4267 35 1 2.6499 3.7552 0.5513 36 1 1.8505 6.3623 4.3331 37 1 3.9239 8.8467 0.1970 38 1 5.2780 8.5323 1.3252 39 1 2.8270 10.2787 1.7197 40 1 4.4897 10.4971 2.3604 41 1 4.1396 8.9877 4.1299 42 1 2.4307 9.4611 3.8955 43 1 1.5611 -0.3871 -2.0628 44 1 3.0797 -0.6610 -1.1757 45 1 2.5248 -2.8279 -2.6781 46 1 3.0458 -5.6195 -4.4320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663185248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:16 Heat of formation + Delta-G solvation = 9.901258 kcal Electronic energy + Delta-G solvation = -27260.145918 eV Core-core repulsion = 23186.414286 eV Total energy + Delta-G solvation = -4073.731632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.92937 -39.51625 -38.55925 -36.85747 -36.56286 -34.52298 -33.74402 -32.52564 -31.20232 -30.06578 -28.83652 -27.79168 -27.59090 -25.41413 -24.31742 -23.08451 -22.05438 -21.10887 -20.47781 -20.14450 -19.10319 -17.81487 -17.77494 -17.05992 -16.51499 -16.20539 -15.90381 -15.70049 -15.05972 -14.71444 -14.63139 -14.47134 -14.35779 -14.00527 -13.84288 -13.74446 -13.49733 -13.38493 -13.25504 -12.97497 -12.87717 -12.33349 -12.06044 -11.78857 -11.73094 -11.47335 -11.32129 -11.20440 -10.96122 -10.88934 -10.61102 -10.30231 -10.19042 -10.16814 -10.15890 -9.44215 -9.10507 -8.77056 -8.41001 -7.93273 -7.81674 -6.37368 -3.77880 1.29038 2.01754 2.08542 3.08795 3.19934 3.23429 3.30352 3.38049 3.39352 3.74715 3.94037 3.95830 4.03980 4.14516 4.35266 4.47709 4.61339 4.71391 4.76194 4.94811 4.96961 5.05876 5.09041 5.18561 5.21764 5.22878 5.30120 5.52831 5.67991 5.72466 5.77732 5.94829 5.98853 6.02224 6.10402 6.18603 6.33097 6.37902 6.44964 6.63413 7.27963 7.34737 7.41029 7.59944 7.61936 8.11534 8.19788 8.66892 9.23068 9.59493 10.11616 10.80549 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.001550 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.170721 B =18062.471086 C =18636.716670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.122 3.878 5 N -0.714 5.714 6 C 0.606 3.394 7 O -0.543 6.543 8 C -0.053 4.053 9 C 0.054 3.946 10 N -0.480 5.480 11 C 0.187 3.813 12 N -0.449 5.449 13 C -0.041 4.041 14 C -0.130 4.130 15 C 0.101 3.899 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.015 0.985 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.407 0.593 36 H 0.187 0.813 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 34.135 8.712 35.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.391 3.609 7 O -0.420 6.420 8 C -0.182 4.182 9 C -0.084 4.084 10 N -0.163 5.163 11 C -0.077 4.077 12 N -0.169 5.169 13 C -0.080 4.080 14 C -0.168 4.168 15 C -0.020 4.020 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.034 0.966 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.242 0.758 36 H 0.204 0.796 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.730 32.889 9.786 34.516 hybrid contribution -0.066 0.165 -0.824 0.843 sum 3.665 33.053 8.962 34.442 Atomic orbital electron populations 1.22631 0.86539 1.04661 0.99161 1.61447 1.08913 1.10541 1.43017 1.22249 1.00846 0.89617 0.95723 1.21359 0.99579 0.80481 0.98690 1.45696 1.57216 1.13914 1.19644 1.16746 0.78955 0.82607 0.82574 1.90818 1.41859 1.74829 1.34534 1.20532 1.08246 0.96294 0.93161 1.22237 1.00386 0.84347 1.01421 1.46359 1.40846 1.11994 1.17126 1.24482 1.02145 0.94973 0.86091 1.70187 1.14761 1.04348 1.27644 1.20681 0.99891 0.86411 1.00984 1.22747 1.03225 0.97317 0.93504 1.22491 1.02704 0.78158 0.98674 1.21868 1.00730 0.94146 0.91700 1.19726 0.85408 0.86629 0.85221 1.90491 1.43782 1.80118 1.31577 1.41869 1.49496 1.07363 1.21505 1.19758 1.32714 0.82297 1.07900 0.87841 1.25250 0.96887 1.00535 0.95326 1.69623 1.38217 1.35611 1.10980 0.85804 0.78179 0.81986 0.78396 1.19213 1.20835 1.20790 0.96639 0.88424 0.91809 0.94469 0.90193 0.90135 0.91080 0.75757 0.79605 0.88084 0.88255 0.89217 0.87730 0.88768 0.88737 0.93338 0.89287 0.77505 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.07 0.54 0.84 16 2 N -0.51 -8.94 4.50 -244.37 -1.10 -10.04 16 3 C 0.04 0.60 5.07 -3.82 -0.02 0.58 16 4 C 0.12 1.68 5.60 -4.04 -0.02 1.66 16 5 N -0.71 -9.08 5.55 -61.41 -0.34 -9.42 16 6 C 0.61 8.62 7.81 -12.56 -0.10 8.52 16 7 O -0.54 -9.26 16.88 5.26 0.09 -9.17 16 8 C -0.05 -0.65 6.97 -83.20 -0.58 -1.23 16 9 C 0.05 0.53 11.75 -16.52 -0.19 0.33 16 10 N -0.48 -3.51 3.55 -112.01 -0.40 -3.91 16 11 C 0.19 1.58 8.58 -154.30 -1.32 0.26 16 12 N -0.45 -5.22 11.01 -6.96 -0.08 -5.30 16 13 C -0.04 -0.14 6.85 -26.65 -0.18 -0.32 16 14 C -0.13 -0.10 7.16 -25.23 -0.18 -0.28 16 15 C 0.10 0.25 7.78 -3.02 -0.02 0.23 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.70 7.47 -10.98 -0.08 10.62 16 18 O -0.58 -15.80 13.91 5.55 0.08 -15.72 16 19 N -0.57 -14.54 5.29 -10.96 -0.06 -14.59 16 20 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 2.00 5.82 -51.93 -0.30 1.70 16 30 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 31 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.03 6.55 -51.93 -0.34 0.69 16 35 H 0.41 4.55 8.18 -40.82 -0.33 4.21 16 36 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.09 1.47 7.93 -51.93 -0.41 1.05 16 45 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -36.74 384.93 -9.36 -46.10 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.62 Total: 10.05 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -2.44 Total: 13.98 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.25 Total: -67.36 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.74 -9.36 -46.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.004 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds