Wall clock time and date at job start Sat Apr 11 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99645 * 2 1 4 4 C 1.53001 * 109.47432 * 90.00251 * 3 2 1 5 5 C 1.52995 * 109.47457 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47125 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99944 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00175 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00027 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00095 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99931 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47376 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47377 * 120.00151 * 11 9 7 14 14 H 1.48501 * 109.47091 * 239.99839 * 11 9 7 15 15 C 1.34772 * 120.00124 * 180.02562 * 2 1 3 16 16 O 1.21286 * 119.99640 * 184.47976 * 15 2 1 17 17 C 1.50697 * 120.00129 * 4.47893 * 15 2 1 18 18 H 1.09001 * 110.85547 * 26.81719 * 17 15 2 19 19 C 1.54630 * 110.96762 * 263.02571 * 17 15 2 20 20 C 1.51350 * 104.16258 * 217.10683 * 19 17 15 21 21 O 1.21303 * 124.92361 * 196.22388 * 20 19 17 22 22 N 1.34417 * 110.13075 * 16.20474 * 20 19 17 23 23 C 1.40762 * 124.34808 * 180.45523 * 22 20 19 24 24 C 1.40254 * 126.07998 * 179.66714 * 23 22 20 25 25 N 1.30832 * 108.33574 * 179.81887 * 24 23 22 26 26 N 1.40071 * 108.36883 * 0.44294 * 25 24 23 27 27 H 0.97001 * 126.05725 * 179.69628 * 26 25 24 28 28 C 1.35749 * 126.08120 * 359.97438 * 23 22 20 29 29 C 1.46764 * 111.30253 * 0.43490 * 22 20 19 30 30 H 1.08996 * 109.47084 * 95.64070 * 1 2 3 31 31 H 1.09000 * 109.46994 * 215.64298 * 1 2 3 32 32 H 1.09008 * 109.47131 * 335.63856 * 1 2 3 33 33 H 1.08995 * 109.47726 * 330.00043 * 3 2 1 34 34 H 1.09008 * 109.47048 * 209.99943 * 3 2 1 35 35 H 1.09003 * 109.46956 * 300.00314 * 4 3 2 36 36 H 1.09005 * 109.47122 * 59.99713 * 4 3 2 37 37 H 1.09008 * 109.47130 * 299.99757 * 5 4 3 38 38 H 1.08995 * 109.47106 * 59.99721 * 5 4 3 39 39 H 0.97001 * 120.00432 * 359.97438 * 6 5 4 40 40 H 0.97000 * 120.00328 * 180.02562 * 10 9 7 41 41 H 1.08994 * 110.49030 * 335.75656 * 19 17 15 42 42 H 1.08997 * 110.48695 * 98.40607 * 19 17 15 43 43 H 1.08001 * 125.83076 * 359.97438 * 24 23 22 44 44 H 1.07997 * 126.21757 * 359.96242 * 28 23 22 45 45 H 1.08998 * 110.24934 * 223.98204 * 29 22 20 46 46 H 1.09006 * 110.24480 * 101.98534 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2179 3.0352 1.4425 6 7 3.4627 3.4578 2.8237 7 6 4.1359 4.6237 3.0739 8 1 4.4867 5.2315 2.2531 9 6 4.3673 5.0244 4.3826 10 7 3.9392 4.2840 5.3831 11 14 5.2850 6.6152 4.7239 12 1 5.6563 7.2582 3.4379 13 1 4.4141 7.5318 5.5029 14 1 6.5146 6.3201 5.5024 15 6 2.1389 -1.1671 -0.0005 16 8 3.3490 -1.1687 0.0815 17 6 1.3889 -2.4702 -0.1030 18 1 0.4408 -2.3324 -0.6228 19 6 1.1682 -3.0931 1.2950 20 6 1.3228 -4.5811 1.0660 21 8 0.9563 -5.4440 1.8358 22 7 1.9247 -4.8075 -0.1144 23 6 2.2078 -6.0867 -0.6291 24 6 2.8270 -6.3646 -1.8565 25 7 2.9217 -7.6632 -1.9850 26 7 2.3581 -8.2612 -0.8507 27 1 2.2892 -9.2140 -0.6822 28 6 1.9247 -7.2707 -0.0286 29 6 2.2484 -3.5496 -0.7977 30 1 -0.3633 -0.1010 -1.0227 31 1 -0.3633 -0.8351 0.5989 32 1 -0.3634 0.9362 0.4239 33 1 1.6084 2.0284 -0.5138 34 1 3.1499 1.1385 -0.5139 35 1 1.5000 1.8407 1.9564 36 1 3.0416 0.9508 1.9563 37 1 4.1704 2.9045 0.9288 38 1 2.6292 3.7950 0.9285 39 1 3.1472 2.9121 3.5610 40 1 4.1006 4.5641 6.2976 41 1 1.9223 -2.7348 1.9957 42 1 0.1671 -2.8647 1.6606 43 1 3.1696 -5.6318 -2.5721 44 1 1.4430 -7.4014 0.9291 45 1 1.9886 -3.6165 -1.8541 46 1 3.3078 -3.3198 -0.6830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:43 Heat of formation + Delta-G solvation = 29.809503 kcal Electronic energy + Delta-G solvation = -28136.104458 eV Core-core repulsion = 24063.236113 eV Total energy + Delta-G solvation = -4072.868346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94555 -40.88025 -39.58164 -36.87188 -36.16552 -34.90038 -33.56549 -32.19089 -31.69001 -29.97439 -28.95316 -28.24563 -27.07940 -25.67190 -23.74373 -23.13194 -22.35881 -21.47849 -20.93025 -19.76014 -19.23942 -18.54736 -17.93429 -17.04761 -16.83751 -16.35062 -15.81231 -15.62079 -15.37015 -14.96266 -14.85284 -14.55550 -14.50135 -14.15563 -13.93759 -13.81164 -13.55344 -13.28356 -13.22857 -13.05195 -12.96050 -12.65575 -12.03326 -11.98683 -11.86903 -11.78348 -11.41044 -10.94832 -10.86239 -10.75447 -10.74874 -10.43350 -10.39584 -10.08529 -10.04969 -9.88213 -9.71296 -8.86132 -8.80984 -8.11351 -6.90360 -5.74802 -3.03547 1.38413 1.85923 2.08652 2.31172 2.65996 2.69360 2.83857 3.44630 3.49975 3.52501 3.72229 3.92977 4.14298 4.33896 4.47762 4.53869 4.60958 4.63738 4.82434 4.96690 5.06607 5.10265 5.10742 5.16820 5.20061 5.30724 5.37234 5.43263 5.45914 5.57706 5.64879 5.65977 5.86359 6.03530 6.27771 6.37067 6.37659 6.42742 6.58726 6.81217 6.84991 6.87002 7.15710 7.17328 7.71404 7.71951 7.92416 8.44118 9.55052 10.13563 10.47834 11.48285 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.001890 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.347240 B =14813.264525 C =15092.603551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.610 5.610 3 C 0.119 3.881 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.523 3.477 16 O -0.524 6.524 17 C -0.124 4.124 18 H 0.115 0.885 19 C -0.136 4.136 20 C 0.521 3.479 21 O -0.521 6.521 22 N -0.533 5.533 23 C 0.009 3.991 24 C 0.043 3.957 25 N -0.277 5.277 26 N -0.473 5.473 27 H 0.446 0.554 28 C 0.043 3.957 29 C 0.116 3.884 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.188 0.812 44 H 0.192 0.808 45 H 0.090 0.910 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -21.975 -17.065 29.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C -0.003 4.003 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.309 3.691 16 O -0.399 6.399 17 C -0.146 4.146 18 H 0.133 0.867 19 C -0.176 4.176 20 C 0.309 3.691 21 O -0.397 6.397 22 N -0.260 5.260 23 C -0.094 4.094 24 C -0.146 4.146 25 N -0.100 5.100 26 N -0.185 5.185 27 H 0.290 0.710 28 C -0.105 4.105 29 C -0.007 4.007 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.205 0.795 44 H 0.209 0.791 45 H 0.108 0.892 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.209 -23.204 -17.401 30.748 hybrid contribution -0.045 1.079 1.172 1.593 sum -10.253 -22.125 -16.230 29.293 Atomic orbital electron populations 1.21878 0.79377 1.03942 1.01754 1.47867 1.07132 1.06249 1.73008 1.21558 0.97433 0.83174 0.98181 1.22062 1.01141 0.99061 0.95582 1.20539 0.96034 0.91870 0.88758 1.42355 1.68312 1.25995 1.01090 1.19293 1.27735 0.98128 0.91823 0.91078 1.24764 1.01761 0.99089 0.95587 1.69674 1.51574 1.38874 0.98135 0.86100 0.79174 0.83067 0.77754 1.20537 1.21882 1.21865 1.19964 0.87708 0.84636 0.76775 1.90771 1.13769 1.86790 1.48595 1.22277 1.00872 0.93410 0.98042 0.86699 1.22276 1.06513 0.91936 0.96902 1.20827 0.76665 0.91406 0.80181 1.90683 1.50511 1.50590 1.47938 1.45133 1.57179 1.03718 1.19945 1.17568 1.10843 0.84323 0.96637 1.23707 1.00717 0.93681 0.96474 1.77288 1.18897 1.07781 1.06059 1.46163 1.48413 1.08895 1.15041 0.70955 1.22557 1.02532 0.87094 0.98364 1.22130 1.01508 0.80163 0.96855 0.92305 0.91239 0.90044 0.90263 0.89679 0.91950 0.91462 0.96216 0.96425 0.78322 0.93574 0.86422 0.86676 0.79496 0.79104 0.89158 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 9.61 59.85 0.58 1.00 16 2 N -0.61 -5.83 2.87 -181.57 -0.52 -6.35 16 3 C 0.12 1.41 5.35 -4.04 -0.02 1.39 16 4 C -0.14 -2.20 5.65 -26.73 -0.15 -2.35 16 5 C 0.16 3.12 6.26 -4.05 -0.03 3.10 16 6 N -0.73 -19.00 5.60 -59.91 -0.34 -19.34 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 11 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 C 0.52 5.44 6.71 -10.99 -0.07 5.37 16 16 O -0.52 -7.66 15.40 5.55 0.09 -7.58 16 17 C -0.12 -0.85 2.57 -90.14 -0.23 -1.09 16 18 H 0.11 0.47 6.86 -51.93 -0.36 0.12 16 19 C -0.14 -1.07 6.26 -26.71 -0.17 -1.24 16 20 C 0.52 5.37 7.98 -10.83 -0.09 5.28 16 21 O -0.52 -6.81 15.64 5.54 0.09 -6.73 16 22 N -0.53 -4.84 3.16 -112.45 -0.36 -5.20 16 23 C 0.01 0.08 6.80 -83.89 -0.57 -0.49 16 24 C 0.04 0.36 11.53 -17.22 -0.20 0.16 16 25 N -0.28 -2.60 12.69 30.70 0.39 -2.21 16 26 N -0.47 -3.54 7.40 30.69 0.23 -3.32 16 27 H 0.45 1.84 8.96 -182.62 -1.64 0.21 16 28 C 0.04 0.38 11.18 -16.68 -0.19 0.19 16 29 C 0.12 0.84 6.45 -3.12 -0.02 0.82 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.30 6.74 -51.93 -0.35 -0.05 16 32 H 0.08 0.48 8.03 -51.92 -0.42 0.07 16 33 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.08 1.12 7.49 -51.92 -0.39 0.73 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 1.09 7.89 -51.93 -0.41 0.68 16 42 H 0.12 0.68 7.98 -51.93 -0.41 0.26 16 43 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.19 1.66 6.51 -52.49 -0.34 1.32 16 45 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 46 H 0.10 0.90 6.95 -51.93 -0.36 0.54 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -37.76 384.70 -8.24 -46.00 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.91 Total: 4.66 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.40 Total: 4.62 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.13 Total: -64.40 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.17 Total: -14.30 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.76 -8.24 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -37.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds