Wall clock time and date at job start Sat Apr 11 2020 04:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.78204 * 2 1 4 4 C 1.54604 * 110.72434 * 236.75491 * 2 1 3 5 5 C 1.53998 * 105.22463 * 219.73328 * 4 2 1 6 6 N 1.47898 * 107.05781 * 358.72351 * 5 4 2 7 7 C 1.46901 * 110.99993 * 145.84673 * 6 5 4 8 8 C 1.53005 * 109.47286 * 69.87095 * 7 6 5 9 9 H 1.09003 * 109.46543 * 60.00047 * 8 7 6 10 10 O 1.42901 * 109.46686 * 300.00354 * 8 7 6 11 11 C 1.52990 * 109.47194 * 179.97438 * 8 7 6 12 12 O 1.42903 * 109.47087 * 184.99988 * 11 8 7 13 13 C 1.35675 * 116.99619 * 180.02562 * 12 11 8 14 14 C 1.39310 * 119.82150 * 359.72169 * 13 12 11 15 15 C 1.36439 * 120.18222 * 179.75898 * 14 13 12 16 16 C 1.40832 * 119.81397 * 0.52025 * 15 14 13 17 17 C 1.41220 * 120.18028 * 179.71609 * 16 15 14 18 18 H 1.07993 * 119.99637 * 24.56291 * 17 16 15 19 19 C 1.39889 * 119.99902 * 204.55900 * 17 16 15 20 20 N 1.30881 * 120.00088 * 17.93047 * 19 17 16 21 21 Si 1.86798 * 120.00114 * 197.92520 * 19 17 16 22 22 H 1.48501 * 109.46715 * 90.00064 * 21 19 17 23 23 H 1.48497 * 109.47396 * 210.00554 * 21 19 17 24 24 H 1.48505 * 109.47122 * 330.00445 * 21 19 17 25 25 C 1.40836 * 119.64105 * 359.73764 * 16 15 14 26 26 C 1.36436 * 119.81300 * 0.02562 * 25 16 15 27 27 C 1.48528 * 105.82507 * 25.33127 * 6 5 4 28 28 H 1.09002 * 110.66719 * 79.38877 * 27 6 5 29 29 C 1.53003 * 110.67212 * 202.36076 * 27 6 5 30 30 O 1.42906 * 109.46631 * 293.54541 * 29 27 6 31 31 H 1.08998 * 109.47099 * 181.79548 * 1 2 3 32 32 H 1.09002 * 109.47041 * 301.78880 * 1 2 3 33 33 H 1.09002 * 109.47461 * 61.79160 * 1 2 3 34 34 H 1.08998 * 110.30735 * 100.76783 * 4 2 1 35 35 H 1.08995 * 110.30157 * 338.69625 * 4 2 1 36 36 H 1.08991 * 109.91572 * 118.07633 * 5 4 2 37 37 H 1.08997 * 109.90966 * 239.37100 * 5 4 2 38 38 H 1.08998 * 109.47579 * 189.87216 * 7 6 5 39 39 H 1.08995 * 109.46732 * 309.87316 * 7 6 5 40 40 H 0.96695 * 114.00232 * 299.99369 * 10 8 7 41 41 H 1.09000 * 109.47536 * 305.00224 * 11 8 7 42 42 H 1.09002 * 109.47138 * 65.00268 * 11 8 7 43 43 H 1.07993 * 119.90522 * 0.02647 * 14 13 12 44 44 H 1.08001 * 120.09150 * 180.24920 * 15 14 13 45 45 H 0.96999 * 120.00247 * 179.97438 * 20 19 17 46 46 H 1.07994 * 120.09203 * 180.02562 * 25 16 15 47 47 H 1.07995 * 119.91198 * 180.02562 * 26 25 16 48 48 H 1.08993 * 109.46984 * 53.54335 * 29 27 6 49 49 H 1.08996 * 109.47368 * 173.55002 * 29 27 6 50 50 H 0.96692 * 113.99709 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0771 -0.7927 -1.2093 5 6 3.2890 -1.5728 -0.6668 6 7 3.4335 -1.2121 0.7603 7 6 3.9224 -2.3537 1.5449 8 6 5.3804 -2.6378 1.1781 9 1 5.9878 -1.7596 1.3972 10 8 5.4701 -2.9438 -0.2149 11 6 5.8896 -3.8264 1.9958 12 8 7.2824 -4.0187 1.7400 13 6 7.8928 -5.0406 2.3912 14 6 7.1608 -5.8399 3.2664 15 6 7.7660 -6.8725 3.9213 16 6 9.1371 -7.1225 3.7189 17 6 9.7728 -8.1855 4.3973 18 1 9.1934 -9.0291 4.7422 19 6 11.1528 -8.1457 4.6226 20 7 11.7979 -7.0102 4.5343 21 14 12.0751 -9.7130 5.0495 22 1 12.5484 -10.3642 3.8016 23 1 13.2406 -9.3832 5.9086 24 1 11.1694 -10.6376 5.7775 25 6 9.8711 -6.3063 2.8364 26 6 9.2497 -5.2807 2.1856 27 6 2.0812 -0.7959 1.2118 28 1 1.4589 -1.6671 1.4166 29 6 2.1766 0.1001 2.4484 30 8 2.6788 -0.6599 3.5495 31 1 -0.3633 -1.0271 0.0322 32 1 -0.3633 0.5414 0.8735 33 1 -0.3634 0.4858 -0.9056 34 1 2.3896 -0.1098 -1.9993 35 1 1.3201 -1.4820 -1.5834 36 1 3.1142 -2.6443 -0.7630 37 1 4.1879 -1.2897 -1.2143 38 1 3.8539 -2.1203 2.6074 39 1 3.3149 -3.2318 1.3259 40 1 4.9530 -3.7159 -0.4821 41 1 5.7391 -3.6285 3.0571 42 1 5.3407 -4.7244 1.7122 43 1 6.1104 -5.6443 3.4236 44 1 7.1963 -7.4938 4.5965 45 1 12.7547 -6.9825 4.6909 46 1 10.9227 -6.4916 2.6754 47 1 9.8108 -4.6541 1.5083 48 1 2.8507 0.9317 2.2434 49 1 1.1875 0.4862 2.6946 50 1 2.7661 -0.1543 4.3691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615456021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:23:58 Heat of formation + Delta-G solvation = -120.530916 kcal Electronic energy + Delta-G solvation = -28820.776504 eV Core-core repulsion = 24812.636501 eV Total energy + Delta-G solvation = -4008.140003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.03812 -38.84120 -37.33938 -36.56279 -35.95495 -33.48064 -33.28157 -30.94270 -30.32391 -29.56176 -28.95677 -27.57933 -25.12972 -24.30551 -24.13222 -22.06366 -20.82648 -20.73534 -20.45010 -20.25662 -17.48722 -17.32534 -17.03061 -16.72446 -16.26356 -15.98225 -15.49337 -15.19012 -14.86545 -14.54510 -14.18855 -13.99549 -13.89710 -13.83414 -13.49218 -13.31630 -13.00152 -12.81192 -12.54325 -12.36051 -12.17852 -12.08291 -11.79358 -11.71904 -11.38163 -11.31104 -11.16254 -11.12713 -11.06591 -10.88596 -10.78805 -10.66549 -10.54865 -10.25494 -9.93817 -9.78682 -9.71052 -9.29090 -8.99208 -8.57923 -7.60514 -6.99136 -6.69038 -4.22234 2.80849 2.98780 3.10437 3.13746 3.24324 3.50626 3.79522 3.97488 4.07594 4.32012 4.49940 4.56654 4.62268 4.66068 4.89287 4.98253 4.98749 5.03435 5.09174 5.17255 5.21379 5.27382 5.30865 5.37422 5.42932 5.54970 5.60295 5.69229 5.70503 5.73223 5.77516 5.82817 5.92762 6.05762 6.11098 6.20452 6.27908 6.74509 6.77020 6.88098 7.01450 7.14845 7.22245 7.37069 7.50266 7.59344 7.71811 7.83397 8.04000 8.24096 8.49773 8.69308 8.93160 9.02534 10.25375 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.001910 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.186978 B =14655.074305 C =15075.671698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.085 0.915 4 C -0.130 4.130 5 C 0.043 3.957 6 N -0.500 5.500 7 C 0.018 3.982 8 C 0.117 3.883 9 H 0.111 0.889 10 O -0.548 6.548 11 C 0.041 3.959 12 O -0.317 6.317 13 C -0.007 4.007 14 C -0.169 4.169 15 C -0.198 4.198 16 C 0.087 3.913 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.133 4.133 26 C -0.120 4.120 27 C 0.067 3.933 28 H 0.058 0.942 29 C 0.091 3.909 30 O -0.570 6.570 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.365 0.635 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.011 13.723 -6.880 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.169 4.169 5 C -0.085 4.085 6 N -0.224 5.224 7 C -0.111 4.111 8 C 0.058 3.942 9 H 0.129 0.871 10 O -0.353 6.353 11 C -0.037 4.037 12 O -0.233 6.233 13 C -0.050 4.050 14 C -0.188 4.188 15 C -0.218 4.218 16 C 0.085 3.915 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.153 4.153 26 C -0.139 4.139 27 C -0.041 4.041 28 H 0.076 0.924 29 C 0.013 3.987 30 O -0.376 6.376 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.212 0.788 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.899 14.412 -7.343 24.876 hybrid contribution -0.687 -1.546 0.895 1.914 sum -19.586 12.866 -6.447 24.305 Atomic orbital electron populations 1.21810 0.94382 1.02007 1.01959 1.22037 0.95317 0.99775 0.93709 0.89710 1.22562 0.97542 0.99063 0.97688 1.22944 0.98570 0.97626 0.89362 1.64572 1.21941 1.33678 1.02258 1.22993 0.95266 0.91828 1.00992 1.21903 0.94384 0.97128 0.80794 0.87096 1.86665 1.73797 1.51000 1.23818 1.23084 0.83447 0.97585 0.99553 1.85889 1.21213 1.49991 1.66198 1.18637 0.92708 0.92751 1.00910 1.20400 0.97712 0.99298 1.01340 1.20553 0.96265 1.00402 1.04564 1.17600 0.90858 0.92443 0.90637 1.19455 0.92364 1.04752 1.32834 0.90586 1.25877 0.98104 0.97016 0.93231 1.69838 1.10292 1.25705 1.36694 0.86326 0.79080 0.82248 0.79104 1.19348 1.20407 1.18752 1.20981 1.00321 0.96617 0.97336 1.19848 0.91173 1.00175 1.02665 1.22872 0.90405 0.97340 0.93503 0.92424 1.22117 0.97162 0.93607 0.85857 1.86446 1.88171 1.41302 1.21697 0.92575 0.92493 0.92156 0.90914 0.91538 0.94069 0.88918 0.87366 0.94794 0.78820 0.92339 0.93304 0.88961 0.88801 0.90947 0.85675 0.88441 0.92711 0.93549 0.77384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.16 37.16 0.34 -0.46 16 2 C -0.09 -0.64 3.10 -88.67 -0.28 -0.91 16 3 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 4 C -0.13 -0.99 6.50 -25.37 -0.16 -1.15 16 5 C 0.04 0.41 5.04 -2.75 -0.01 0.40 16 6 N -0.50 -5.38 4.96 -222.53 -1.10 -6.49 16 7 C 0.02 0.21 4.53 -3.82 -0.02 0.19 16 8 C 0.12 1.63 3.50 -26.73 -0.09 1.54 16 9 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 10 O -0.55 -7.62 10.62 -40.05 -0.43 -8.04 16 11 C 0.04 0.67 4.37 37.15 0.16 0.83 16 12 O -0.32 -6.80 10.09 -23.55 -0.24 -7.03 16 13 C -0.01 -0.16 6.71 -38.78 -0.26 -0.42 16 14 C -0.17 -3.92 8.96 -39.83 -0.36 -4.28 16 15 C -0.20 -4.98 9.74 -39.25 -0.38 -5.36 16 16 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 17 C -0.46 -12.51 9.04 -37.83 -0.34 -12.86 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 20 N -0.80 -21.04 10.96 55.54 0.61 -20.43 16 21 Si 0.91 18.97 29.60 -169.99 -5.03 13.94 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.13 -3.57 8.64 -39.25 -0.34 -3.90 16 26 C -0.12 -3.00 9.92 -39.83 -0.40 -3.40 16 27 C 0.07 0.60 2.16 -65.70 -0.14 0.46 16 28 H 0.06 0.57 7.92 -51.93 -0.41 0.15 16 29 C 0.09 0.72 6.76 37.16 0.25 0.97 16 30 O -0.57 -5.11 11.26 -35.23 -0.40 -5.51 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.04 0.39 6.77 -51.93 -0.35 0.04 16 37 H 0.09 1.03 7.37 -51.93 -0.38 0.65 16 38 H 0.11 1.35 5.70 -51.93 -0.30 1.05 16 39 H 0.03 0.38 7.82 -51.93 -0.41 -0.02 16 40 H 0.37 3.99 8.41 45.56 0.38 4.37 16 41 H 0.06 0.94 7.64 -51.93 -0.40 0.55 16 42 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 43 H 0.09 1.87 6.27 -52.49 -0.33 1.54 16 44 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 46 H 0.13 3.41 6.16 -52.49 -0.32 3.09 16 47 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.05 0.29 8.11 -51.93 -0.42 -0.14 16 50 H 0.38 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -31.10 393.63 -10.04 -41.14 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.67 Total: 11.27 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.71 Total: -24.79 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: -0.49 Total: -26.91 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.06 Total: -20.58 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.10 -10.04 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615456021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.391 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds