Wall clock time and date at job start Sat Apr 11 2020 04:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00211 * 2 1 4 4 H 1.48506 * 109.46764 * 239.99318 * 3 2 1 5 5 H 1.48493 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47082 * 119.99607 * 3 2 1 7 7 C 1.37885 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47339 * 184.06543 * 10 9 7 12 12 C 1.48143 * 111.00099 * 294.47415 * 11 10 9 13 13 C 1.54079 * 107.14850 * 215.68208 * 12 11 10 14 14 C 1.54811 * 105.20665 * 1.07521 * 13 12 11 15 15 C 1.47184 * 111.00256 * 177.16733 * 11 10 9 16 16 C 1.53428 * 111.49159 * 278.29546 * 15 11 10 17 17 C 1.54754 * 101.46472 * 145.74416 * 16 15 11 18 18 N 1.46904 * 105.52642 * 335.63084 * 17 16 15 19 19 C 1.46499 * 124.37958 * 196.81089 * 18 17 16 20 20 C 1.53001 * 109.47044 * 269.97913 * 19 18 17 21 21 H 1.09003 * 110.21036 * 294.52152 * 20 19 18 22 22 C 1.54477 * 110.24454 * 172.50069 * 20 19 18 23 23 C 1.54633 * 101.76352 * 266.41405 * 22 20 19 24 24 C 1.51279 * 104.19616 * 335.20111 * 23 22 20 25 25 O 1.21279 * 124.94546 * 196.23273 * 24 23 22 26 26 N 1.34428 * 110.11387 * 16.25485 * 24 23 22 27 27 C 1.34811 * 111.24558 * 16.78909 * 18 17 16 28 28 O 1.21284 * 125.17122 * 178.86354 * 27 18 17 29 29 H 0.97007 * 119.99993 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47256 * 300.00281 * 9 7 2 31 31 H 1.09002 * 109.46881 * 59.99814 * 9 7 2 32 32 H 1.08996 * 109.46773 * 304.06956 * 10 9 7 33 33 H 1.09003 * 109.46522 * 64.06488 * 10 9 7 34 34 H 1.09000 * 109.90149 * 335.06477 * 12 11 10 35 35 H 1.09002 * 109.90241 * 96.12926 * 12 11 10 36 36 H 1.09001 * 110.29135 * 120.00417 * 13 12 11 37 37 H 1.08998 * 110.29891 * 242.13486 * 13 12 11 38 38 H 1.08994 * 110.75097 * 139.09757 * 14 13 12 39 39 H 1.08996 * 110.75009 * 262.45776 * 14 13 12 40 40 H 1.08996 * 111.02589 * 263.78826 * 16 15 11 41 41 H 1.08999 * 111.03173 * 27.69711 * 16 15 11 42 42 H 1.08998 * 110.23648 * 216.62172 * 17 16 15 43 43 H 1.08994 * 110.23460 * 94.64544 * 17 16 15 44 44 H 1.08999 * 109.46818 * 29.97337 * 19 18 17 45 45 H 1.08990 * 109.47351 * 149.97501 * 19 18 17 46 46 H 1.08994 * 110.97072 * 24.53201 * 22 20 19 47 47 H 1.09001 * 110.96886 * 148.29607 * 22 20 19 48 48 H 1.08999 * 110.48589 * 216.52877 * 23 22 20 49 49 H 1.08991 * 110.48809 * 93.87994 * 23 22 20 50 50 H 0.97003 * 124.34645 * 180.42546 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5132 -4.9320 -0.0976 12 6 0.6851 -5.1622 1.1089 13 6 0.7067 -6.6764 1.3928 14 6 1.6154 -7.2823 0.2955 15 6 2.4417 -6.0719 -0.1682 16 6 2.9717 -6.2778 -1.5932 17 6 4.4113 -6.7739 -1.3173 18 7 4.7577 -6.2556 0.0129 19 6 6.1226 -6.1718 0.5385 20 6 6.4668 -7.4692 1.2729 21 1 5.8384 -7.5798 2.1566 22 6 7.9593 -7.4780 1.6713 23 6 8.6006 -8.2184 0.4748 24 6 7.4752 -9.0580 -0.0883 25 8 7.6184 -9.9903 -0.8507 26 7 6.2933 -8.6201 0.3790 27 6 3.6571 -5.8666 0.6874 28 8 3.6503 -5.4191 1.8146 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 2.9187 -3.5643 -0.8507 33 1 2.8228 -3.6463 0.9248 34 1 1.1048 -4.6198 1.9561 35 1 -0.3372 -4.8309 0.9260 36 1 1.1258 -6.8700 2.3802 37 1 -0.2996 -7.0891 1.3208 38 1 2.2619 -8.0544 0.7124 39 1 1.0178 -7.6791 -0.5251 40 1 2.3915 -7.0350 -2.1207 41 1 2.9809 -5.3388 -2.1466 42 1 5.0968 -6.3776 -2.0664 43 1 4.4411 -7.8634 -1.3169 44 1 6.8207 -6.0245 -0.2855 45 1 6.1947 -5.3326 1.2302 46 1 8.3468 -6.4627 1.7547 47 1 8.1122 -8.0297 2.5988 48 1 9.4183 -8.8546 0.8137 49 1 8.9542 -7.5055 -0.2700 50 1 5.4360 -9.0144 0.1544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:19 Heat of formation + Delta-G solvation = -60.210212 kcal Electronic energy + Delta-G solvation = -30746.376298 eV Core-core repulsion = 26773.144747 eV Total energy + Delta-G solvation = -3973.231550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46415 -40.54152 -37.76274 -36.86364 -36.20521 -33.73236 -32.20660 -31.90255 -31.71217 -28.96838 -28.49945 -27.73475 -25.49343 -24.46168 -23.49101 -21.86495 -21.65320 -21.11687 -20.72386 -19.83052 -18.82585 -17.79664 -17.06241 -16.47042 -16.14777 -15.88920 -15.62577 -15.38834 -15.04035 -14.63546 -14.41759 -14.18730 -14.09505 -13.98893 -13.66811 -13.53829 -13.07402 -12.91533 -12.86577 -12.53723 -12.47887 -12.15739 -12.09340 -11.76169 -11.71015 -11.49886 -11.39197 -11.07279 -10.98098 -10.88731 -10.72812 -10.61347 -10.53089 -10.20399 -9.89238 -9.82820 -9.72416 -9.37287 -9.13296 -8.70476 -8.33061 -7.81333 -5.98097 -4.00266 2.26829 2.57919 2.78151 3.01893 3.33827 3.38012 3.40412 3.98233 4.06132 4.14233 4.31560 4.40431 4.48448 4.51765 4.58409 4.70063 4.80647 4.86828 4.93401 5.09413 5.16469 5.17897 5.23934 5.29529 5.37782 5.38356 5.41785 5.46291 5.52167 5.61264 5.80514 5.83394 5.91436 6.01578 6.09614 6.19594 6.37905 6.39349 6.44399 6.48359 6.55274 6.69459 6.94704 7.00686 7.35975 7.39154 7.74587 7.89261 7.91337 8.07549 8.20881 8.44555 9.05975 9.62878 11.13319 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.003187 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.540195 B = 8784.172528 C = 9915.170353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.033 3.967 10 C 0.042 3.958 11 N -0.483 5.483 12 C 0.040 3.960 13 C -0.129 4.129 14 C -0.097 4.097 15 C 0.057 3.943 16 C -0.115 4.115 17 C 0.106 3.894 18 N -0.622 5.622 19 C 0.115 3.885 20 C 0.112 3.888 21 H 0.093 0.907 22 C -0.125 4.125 23 C -0.157 4.157 24 C 0.519 3.481 25 O -0.538 6.538 26 N -0.721 5.721 27 C 0.511 3.489 28 O -0.513 6.513 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.526 -18.815 0.987 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.085 4.085 11 N -0.206 5.206 12 C -0.087 4.087 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.037 4.037 16 C -0.153 4.153 17 C -0.017 4.017 18 N -0.357 5.357 19 C -0.009 4.009 20 C 0.006 3.994 21 H 0.111 0.889 22 C -0.164 4.164 23 C -0.198 4.198 24 C 0.305 3.695 25 O -0.415 6.415 26 N -0.376 5.376 27 C 0.298 3.702 28 O -0.387 6.387 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 12.284 -18.817 0.788 22.486 hybrid contribution 0.650 0.952 0.602 1.300 sum 12.934 -17.865 1.390 22.100 Atomic orbital electron populations 1.69962 1.05990 1.26649 1.50624 1.24979 0.94830 0.99103 0.95322 0.86665 0.79603 0.83199 0.78574 1.20260 1.21242 1.20287 1.21117 0.92836 0.91048 1.50917 0.93030 1.19012 0.93770 0.89964 0.97690 1.22710 0.97585 0.88618 0.99608 1.64910 1.17366 1.01109 1.37196 1.22856 0.99160 0.94467 0.92245 1.22468 0.99772 0.96031 0.98409 1.22234 0.97199 0.94892 0.99223 1.22135 0.91222 0.95370 0.94985 1.22506 0.93486 1.03596 0.95697 1.22190 0.97286 0.98331 0.83914 1.48391 1.06011 1.63903 1.17433 1.21828 0.82660 0.97109 0.99260 1.22196 0.97855 0.86126 0.93264 0.88851 1.22603 0.92757 1.02689 0.98320 1.22361 0.98042 1.00215 0.99141 1.20938 0.85492 0.83315 0.79767 1.90766 1.85512 1.29425 1.35812 1.46330 1.09130 1.32972 1.49199 1.21429 0.86060 0.76193 0.86560 1.90713 1.86247 1.43701 1.18030 0.92956 0.96566 0.95816 0.92503 0.94050 0.92603 0.90108 0.91656 0.91065 0.91652 0.89652 0.88852 0.88852 0.90532 0.91632 0.90012 0.88551 0.88586 0.89461 0.87941 0.87659 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.88 4.90 -27.88 -0.14 0.74 16 10 C 0.04 0.91 3.87 -3.83 -0.01 0.89 16 11 N -0.48 -8.74 5.00 -218.03 -1.09 -9.83 16 12 C 0.04 0.71 5.14 -2.57 -0.01 0.70 16 13 C -0.13 -1.72 6.86 -25.21 -0.17 -1.89 16 14 C -0.10 -1.14 5.99 -25.41 -0.15 -1.29 16 15 C 0.06 0.80 0.55 -132.32 -0.07 0.73 16 16 C -0.11 -1.29 6.36 -25.59 -0.16 -1.45 16 17 C 0.11 0.98 7.00 -2.90 -0.02 0.96 16 18 N -0.62 -6.94 2.79 -172.54 -0.48 -7.42 16 19 C 0.12 1.01 5.56 -4.04 -0.02 0.99 16 20 C 0.11 0.80 3.82 -67.01 -0.26 0.55 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 22 C -0.13 -0.61 6.70 -25.10 -0.17 -0.78 16 23 C -0.16 -0.92 6.86 -26.74 -0.18 -1.11 16 24 C 0.52 4.91 8.43 -10.86 -0.09 4.82 16 25 O -0.54 -7.46 18.03 5.56 0.10 -7.36 16 26 N -0.72 -5.70 5.15 -52.77 -0.27 -5.98 16 27 C 0.51 7.63 5.51 -11.28 -0.06 7.57 16 28 O -0.51 -9.52 15.38 5.55 0.09 -9.44 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.02 0.46 7.49 -51.93 -0.39 0.07 16 31 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.23 7.39 -51.93 -0.38 0.85 16 33 H 0.04 0.98 5.74 -51.93 -0.30 0.68 16 34 H 0.06 1.12 7.47 -51.93 -0.39 0.73 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 39 H 0.08 0.87 7.77 -51.93 -0.40 0.47 16 40 H 0.09 0.84 7.63 -51.93 -0.40 0.45 16 41 H 0.09 1.21 7.39 -51.93 -0.38 0.83 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.50 6.97 -51.93 -0.36 0.14 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.96 7.95 -51.93 -0.41 0.54 16 46 H 0.10 0.35 7.89 -51.93 -0.41 -0.06 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.41 3.21 7.99 -40.82 -0.33 2.89 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -35.69 389.76 -10.35 -46.04 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.34 Total: -0.10 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.94 Total: -2.30 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.11 Total: -49.62 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.19 Total: -16.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.69 -10.35 -46.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.171 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds