Wall clock time and date at job start Sat Apr 11 2020 04:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00211 * 2 1 4 4 H 1.48506 * 109.46764 * 239.99318 * 3 2 1 5 5 H 1.48493 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47082 * 119.99607 * 3 2 1 7 7 C 1.37885 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47339 * 184.06543 * 10 9 7 12 12 C 1.48143 * 111.00099 * 294.47415 * 11 10 9 13 13 C 1.54079 * 107.14850 * 215.68208 * 12 11 10 14 14 C 1.54811 * 105.20665 * 1.07521 * 13 12 11 15 15 C 1.47184 * 111.00256 * 177.16733 * 11 10 9 16 16 C 1.53428 * 111.49159 * 278.29546 * 15 11 10 17 17 C 1.54754 * 101.46472 * 145.74416 * 16 15 11 18 18 N 1.46904 * 105.52642 * 335.63084 * 17 16 15 19 19 C 1.46499 * 124.37958 * 196.81089 * 18 17 16 20 20 C 1.53001 * 109.47044 * 269.97913 * 19 18 17 21 21 H 1.09003 * 110.21036 * 294.52152 * 20 19 18 22 22 C 1.54477 * 110.24454 * 172.50069 * 20 19 18 23 23 C 1.54633 * 101.76352 * 266.41405 * 22 20 19 24 24 C 1.51279 * 104.19616 * 335.20111 * 23 22 20 25 25 O 1.21279 * 124.94546 * 196.23273 * 24 23 22 26 26 N 1.34428 * 110.11387 * 16.25485 * 24 23 22 27 27 C 1.34811 * 111.24558 * 16.78909 * 18 17 16 28 28 O 1.21284 * 125.17122 * 178.86354 * 27 18 17 29 29 H 0.97007 * 119.99993 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47256 * 300.00281 * 9 7 2 31 31 H 1.09002 * 109.46881 * 59.99814 * 9 7 2 32 32 H 1.08996 * 109.46773 * 304.06956 * 10 9 7 33 33 H 1.09003 * 109.46522 * 64.06488 * 10 9 7 34 34 H 1.09000 * 109.90149 * 335.06477 * 12 11 10 35 35 H 1.09002 * 109.90241 * 96.12926 * 12 11 10 36 36 H 1.09001 * 110.29135 * 120.00417 * 13 12 11 37 37 H 1.08998 * 110.29891 * 242.13486 * 13 12 11 38 38 H 1.08994 * 110.75097 * 139.09757 * 14 13 12 39 39 H 1.08996 * 110.75009 * 262.45776 * 14 13 12 40 40 H 1.08996 * 111.02589 * 263.78826 * 16 15 11 41 41 H 1.08999 * 111.03173 * 27.69711 * 16 15 11 42 42 H 1.08998 * 110.23648 * 216.62172 * 17 16 15 43 43 H 1.08994 * 110.23460 * 94.64544 * 17 16 15 44 44 H 1.08999 * 109.46818 * 29.97337 * 19 18 17 45 45 H 1.08990 * 109.47351 * 149.97501 * 19 18 17 46 46 H 1.08994 * 110.97072 * 24.53201 * 22 20 19 47 47 H 1.09001 * 110.96886 * 148.29607 * 22 20 19 48 48 H 1.08999 * 110.48589 * 216.52877 * 23 22 20 49 49 H 1.08991 * 110.48809 * 93.87994 * 23 22 20 50 50 H 0.97003 * 124.34645 * 180.42546 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5132 -4.9320 -0.0976 12 6 0.6851 -5.1622 1.1089 13 6 0.7067 -6.6764 1.3928 14 6 1.6154 -7.2823 0.2955 15 6 2.4417 -6.0719 -0.1682 16 6 2.9717 -6.2778 -1.5932 17 6 4.4113 -6.7739 -1.3173 18 7 4.7577 -6.2556 0.0129 19 6 6.1226 -6.1718 0.5385 20 6 6.4668 -7.4692 1.2729 21 1 5.8384 -7.5798 2.1566 22 6 7.9593 -7.4780 1.6713 23 6 8.6006 -8.2184 0.4748 24 6 7.4752 -9.0580 -0.0883 25 8 7.6184 -9.9903 -0.8507 26 7 6.2933 -8.6201 0.3790 27 6 3.6571 -5.8666 0.6874 28 8 3.6503 -5.4191 1.8146 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 2.9187 -3.5643 -0.8507 33 1 2.8228 -3.6463 0.9248 34 1 1.1048 -4.6198 1.9561 35 1 -0.3372 -4.8309 0.9260 36 1 1.1258 -6.8700 2.3802 37 1 -0.2996 -7.0891 1.3208 38 1 2.2619 -8.0544 0.7124 39 1 1.0178 -7.6791 -0.5251 40 1 2.3915 -7.0350 -2.1207 41 1 2.9809 -5.3388 -2.1466 42 1 5.0968 -6.3776 -2.0664 43 1 4.4411 -7.8634 -1.3169 44 1 6.8207 -6.0245 -0.2855 45 1 6.1947 -5.3326 1.2302 46 1 8.3468 -6.4627 1.7547 47 1 8.1122 -8.0297 2.5988 48 1 9.4183 -8.8546 0.8137 49 1 8.9542 -7.5055 -0.2700 50 1 5.4360 -9.0144 0.1544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040734.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:19 Heat of formation + Delta-G solvation = -86.887846 kcal Electronic energy + Delta-G solvation = -30747.533127 eV Core-core repulsion = 26773.144747 eV Total energy + Delta-G solvation = -3974.388379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51635 -41.29337 -38.88370 -37.87938 -37.20344 -35.67794 -33.75768 -33.08216 -32.25009 -30.42166 -29.70298 -28.76378 -26.44877 -26.16075 -24.60808 -23.30010 -22.53356 -21.93978 -21.44596 -21.31285 -19.98634 -18.65281 -18.50464 -17.85975 -17.11734 -16.97347 -16.67737 -16.54627 -16.37187 -16.01856 -15.69991 -15.52716 -15.02875 -14.81980 -14.62738 -14.41041 -14.27730 -14.19159 -13.93062 -13.62622 -13.50419 -13.40113 -13.25867 -12.94425 -12.85882 -12.72617 -12.60814 -12.43199 -12.28767 -12.16778 -12.14626 -11.90896 -11.65568 -11.60896 -11.45262 -11.28204 -11.01181 -10.95501 -10.59103 -10.52261 -9.58929 -9.27615 -8.23309 -6.35454 1.36436 1.40433 1.42750 1.48459 1.58738 1.92312 2.37177 2.37363 2.91907 3.09467 3.39631 3.42664 3.48859 3.57369 3.63334 3.78095 3.86314 4.04051 4.06572 4.13363 4.16848 4.24583 4.40262 4.42063 4.51603 4.55535 4.58857 4.63920 4.74890 4.78399 4.84144 4.90103 4.94981 4.96321 5.01026 5.05693 5.11023 5.12417 5.15890 5.25366 5.37448 5.53262 5.57681 5.71835 5.78463 5.93915 5.99625 6.03174 6.07154 6.23892 6.79490 7.11705 7.22596 7.33340 8.88725 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.003187 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.540195 B = 8784.172528 C = 9915.170353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.044 3.956 10 C 0.069 3.931 11 N -0.490 5.490 12 C 0.038 3.962 13 C -0.121 4.121 14 C -0.088 4.088 15 C 0.046 3.954 16 C -0.111 4.111 17 C 0.108 3.892 18 N -0.614 5.614 19 C 0.110 3.890 20 C 0.119 3.881 21 H 0.083 0.917 22 C -0.115 4.115 23 C -0.150 4.150 24 C 0.513 3.487 25 O -0.587 6.587 26 N -0.714 5.714 27 C 0.503 3.497 28 O -0.560 6.560 29 H 0.265 0.735 30 H -0.015 1.015 31 H -0.003 1.003 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.121 0.879 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.638 -19.924 0.151 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.007 3.993 10 C -0.059 4.059 11 N -0.213 5.213 12 C -0.090 4.090 13 C -0.159 4.159 14 C -0.126 4.126 15 C -0.048 4.048 16 C -0.149 4.149 17 C -0.014 4.014 18 N -0.348 5.348 19 C -0.013 4.013 20 C 0.013 3.987 21 H 0.101 0.899 22 C -0.154 4.154 23 C -0.190 4.190 24 C 0.302 3.698 25 O -0.468 6.468 26 N -0.368 5.368 27 C 0.289 3.711 28 O -0.438 6.438 29 H 0.074 0.926 30 H 0.003 0.997 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.132 0.868 47 H 0.116 0.884 48 H 0.131 0.869 49 H 0.139 0.861 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 14.419 -19.945 -0.065 24.612 hybrid contribution -0.053 1.286 0.873 1.555 sum 14.366 -18.660 0.807 23.563 Atomic orbital electron populations 1.70102 1.07787 1.27951 1.51059 1.25969 0.95806 1.03310 0.94408 0.85481 0.78340 0.77903 0.79222 1.18768 1.20414 1.19451 1.21514 0.93195 0.92378 1.51486 0.92795 1.18801 0.93912 0.91858 0.94761 1.22174 0.96007 0.89237 0.98470 1.64804 1.18309 1.00923 1.37225 1.22822 0.97874 0.97483 0.90787 1.22421 1.01775 0.92653 0.99039 1.22313 0.96927 0.94114 0.99268 1.22413 0.90895 0.94436 0.97009 1.22562 0.95053 1.03707 0.93620 1.22365 0.96258 0.99749 0.83028 1.48469 1.06166 1.62435 1.17683 1.22040 0.81648 0.97628 0.99984 1.22121 0.99457 0.84843 0.92327 0.89875 1.22638 0.90535 1.03858 0.98321 1.22400 0.97003 1.00071 0.99555 1.21512 0.86607 0.82792 0.78928 1.90742 1.86260 1.31674 1.38137 1.46358 1.09009 1.32695 1.48692 1.21533 0.87350 0.76034 0.86147 1.90689 1.87012 1.46059 1.20057 0.92614 0.99668 0.98468 0.92381 0.96080 0.96313 0.91531 0.91976 0.88670 0.89398 0.87180 0.85868 0.90894 0.88981 0.89051 0.87771 0.89884 0.86784 0.88443 0.86907 0.86108 0.75297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.55 -32.77 9.11 25.60 0.23 -32.54 16 8 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.04 2.50 4.90 29.85 0.15 2.64 16 10 C 0.07 3.17 3.87 86.31 0.33 3.51 16 11 N -0.49 -18.30 5.00 -843.72 -4.22 -22.52 16 12 C 0.04 1.42 5.14 86.43 0.44 1.87 16 13 C -0.12 -3.15 6.86 31.58 0.22 -2.93 16 14 C -0.09 -1.85 5.99 31.45 0.19 -1.66 16 15 C 0.05 1.26 0.55 2.91 0.00 1.26 16 16 C -0.11 -2.26 6.36 31.34 0.20 -2.06 16 17 C 0.11 1.69 7.00 86.90 0.61 2.30 16 18 N -0.61 -12.70 2.79 -818.18 -2.28 -14.98 16 19 C 0.11 1.72 5.56 86.38 0.48 2.20 16 20 C 0.12 1.45 3.82 45.44 0.17 1.62 16 21 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 22 C -0.12 -0.78 6.70 31.65 0.21 -0.57 16 23 C -0.15 -1.31 6.86 30.59 0.21 -1.10 16 24 C 0.51 8.64 8.43 87.90 0.74 9.39 16 25 O -0.59 -15.58 18.03 -3.03 -0.05 -15.64 16 26 N -0.71 -9.65 5.15 -439.44 -2.26 -11.92 16 27 C 0.50 14.88 5.51 87.45 0.48 15.37 16 28 O -0.56 -21.53 15.38 -3.04 -0.05 -21.58 16 29 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 30 H -0.02 -0.93 7.49 -2.39 -0.02 -0.95 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.06 2.60 7.39 -2.39 -0.02 2.59 16 33 H 0.02 1.06 5.74 -2.39 -0.01 1.04 16 34 H 0.02 0.81 7.47 -2.39 -0.02 0.79 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 1.51 8.00 -2.39 -0.02 1.49 16 39 H 0.11 1.81 7.77 -2.39 -0.02 1.79 16 40 H 0.12 1.76 7.63 -2.39 -0.02 1.74 16 41 H 0.07 1.81 7.39 -2.39 -0.02 1.80 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.04 6.97 -2.39 -0.02 1.02 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.58 7.95 -2.39 -0.02 1.56 16 46 H 0.11 0.43 7.89 -2.39 -0.02 0.41 16 47 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.41 5.43 7.99 -92.71 -0.74 4.69 16 Total: -1.00 -82.98 389.76 -1.22 -84.20 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.20 Total: 12.97 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.13 Total: -0.06 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -8.48 Total: -107.23 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.10 Total: -37.22 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -82.98 -1.22 -84.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040734.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.687 kcal (2) G-P(sol) polarization free energy of solvation -82.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds