Wall clock time and date at job start Sat Apr 11 2020 04:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47356 * 270.00220 * 3 2 1 5 5 H 1.48504 * 109.47313 * 29.99917 * 3 2 1 6 6 H 1.48499 * 109.47570 * 150.00031 * 3 2 1 7 7 C 1.37875 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99578 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.48725 * 110.99909 * 307.15277 * 11 10 9 13 13 C 1.55187 * 103.42020 * 201.24730 * 12 11 10 14 14 C 1.54804 * 102.85252 * 36.84376 * 13 12 11 15 15 C 1.47077 * 110.99999 * 190.00209 * 11 10 9 16 16 C 1.53867 * 110.70209 * 266.25970 * 15 11 10 17 17 C 1.54648 * 101.58126 * 96.21165 * 16 15 11 18 18 N 1.46854 * 105.50635 * 24.75859 * 17 16 15 19 19 C 1.46494 * 124.36727 * 163.10533 * 18 17 16 20 20 C 1.53003 * 109.47224 * 90.02978 * 19 18 17 21 21 H 1.08996 * 110.21921 * 63.06371 * 20 19 18 22 22 C 1.54482 * 110.24934 * 185.00056 * 20 19 18 23 23 C 1.54628 * 101.76707 * 93.57710 * 22 20 19 24 24 C 1.51287 * 104.19493 * 24.80208 * 23 22 20 25 25 O 1.21273 * 124.94263 * 163.71282 * 24 23 22 26 26 N 1.34426 * 110.11120 * 343.74452 * 24 23 22 27 27 C 1.34667 * 111.25848 * 343.12745 * 18 17 16 28 28 O 1.21278 * 125.07384 * 180.87208 * 27 18 17 29 29 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47080 * 60.00426 * 9 7 2 31 31 H 1.08995 * 109.47746 * 300.00292 * 9 7 2 32 32 H 1.08998 * 109.47122 * 60.00413 * 10 9 7 33 33 H 1.09001 * 109.46879 * 300.00118 * 10 9 7 34 34 H 1.09000 * 110.64787 * 319.65719 * 12 11 10 35 35 H 1.09003 * 110.64339 * 82.72337 * 12 11 10 36 36 H 1.09005 * 110.70773 * 278.53776 * 13 12 11 37 37 H 1.08995 * 110.82293 * 155.20342 * 13 12 11 38 38 H 1.09002 * 110.37261 * 219.32603 * 14 13 12 39 39 H 1.08999 * 110.36953 * 97.10209 * 14 13 12 40 40 H 1.09002 * 111.00584 * 214.28738 * 16 15 11 41 41 H 1.08993 * 111.00195 * 338.10493 * 16 15 11 42 42 H 1.09000 * 110.24240 * 143.76747 * 17 16 15 43 43 H 1.09001 * 110.24319 * 265.74591 * 17 16 15 44 44 H 1.08999 * 109.47300 * 210.02600 * 19 18 17 45 45 H 1.08999 * 109.47355 * 330.02665 * 19 18 17 46 46 H 1.08998 * 110.96779 * 211.70168 * 22 20 19 47 47 H 1.09007 * 110.96537 * 335.46365 * 22 20 19 48 48 H 1.09003 * 110.48463 * 143.47399 * 23 22 20 49 49 H 1.09004 * 110.48868 * 266.12170 * 23 22 20 50 50 H 0.97008 * 124.34131 * 179.59767 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5109 -4.9342 0.0020 12 6 0.5187 -4.9763 1.1091 13 6 0.2630 -6.4943 1.3060 14 6 1.6612 -7.1132 1.0647 15 6 2.4186 -6.0667 0.2402 16 6 2.8971 -6.6699 -1.0919 17 6 4.2582 -5.9608 -1.2826 18 7 4.6969 -5.5837 0.0672 19 6 6.0701 -5.2117 0.4167 20 6 6.2471 -3.7010 0.2510 21 1 5.5946 -3.1672 0.9419 22 6 7.7206 -3.3056 0.4936 23 6 8.2942 -3.3300 -0.9421 24 6 7.0897 -3.0952 -1.8269 25 8 7.1381 -2.7654 -2.9929 26 7 5.9581 -3.3046 -1.1322 27 6 3.6741 -5.6245 0.9422 28 8 3.7530 -5.3459 2.1200 29 1 -0.4849 0.8401 0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 2.8727 -3.6039 0.8909 33 1 2.8714 -3.6046 -0.8891 34 1 0.9355 -4.5376 2.0156 35 1 -0.4002 -4.4656 0.8211 36 1 -0.4537 -6.8628 0.5720 37 1 -0.0806 -6.7010 2.3195 38 1 1.5725 -8.0449 0.5059 39 1 2.1678 -7.2876 2.0139 40 1 3.0270 -7.7489 -1.0081 41 1 2.2105 -6.4228 -1.9016 42 1 4.9780 -6.6420 -1.7365 43 1 4.1370 -5.0720 -1.9018 44 1 6.2695 -5.4895 1.4516 45 1 6.7662 -5.7334 -0.2401 46 1 7.7906 -2.3070 0.9248 47 1 8.2219 -4.0381 1.1264 48 1 9.0258 -2.5328 -1.0743 49 1 8.7424 -4.3000 -1.1575 50 1 5.0651 -3.2063 -1.4983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:22 Heat of formation + Delta-G solvation = -59.928956 kcal Electronic energy + Delta-G solvation = -31634.418514 eV Core-core repulsion = 27661.199160 eV Total energy + Delta-G solvation = -3973.219354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43617 -40.25360 -37.64770 -36.75371 -35.97586 -33.86427 -32.15413 -31.90380 -31.38352 -28.77430 -28.51913 -27.73609 -25.28185 -24.55919 -23.36726 -21.85497 -21.63982 -20.85460 -20.41001 -19.94631 -18.59310 -17.59190 -16.93719 -16.59540 -16.05966 -15.78550 -15.48379 -15.14703 -14.98145 -14.67574 -14.47028 -14.10010 -13.83597 -13.80111 -13.49614 -13.30054 -13.12007 -12.84043 -12.59385 -12.49896 -12.38052 -12.23341 -12.03744 -11.77915 -11.54188 -11.41237 -11.17112 -11.10081 -10.95046 -10.82800 -10.79777 -10.57419 -10.51134 -10.10030 -9.87114 -9.72672 -9.47247 -9.39618 -9.18753 -8.55374 -8.38611 -7.95296 -6.03680 -4.06221 2.57124 2.65349 2.89287 3.30239 3.36566 3.36950 3.39059 4.17049 4.24913 4.31506 4.39417 4.41840 4.52869 4.57172 4.74307 4.84455 4.92056 4.95502 5.10288 5.16898 5.25868 5.29778 5.32968 5.35405 5.42573 5.47136 5.62995 5.64642 5.74144 5.80021 5.81141 5.87786 5.93239 5.99693 6.09187 6.13583 6.28792 6.39654 6.46156 6.48478 6.76053 6.83561 7.06873 7.09190 7.27135 7.32858 7.65350 7.78056 7.98413 8.23310 8.27035 8.36159 8.99232 9.57818 11.07604 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007240 B = 0.006393 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.667268 B = 4378.832182 C = 7283.870292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.028 3.972 10 C 0.046 3.954 11 N -0.483 5.483 12 C 0.038 3.962 13 C -0.122 4.122 14 C -0.110 4.110 15 C 0.059 3.941 16 C -0.116 4.116 17 C 0.104 3.896 18 N -0.619 5.619 19 C 0.119 3.881 20 C 0.109 3.891 21 H 0.097 0.903 22 C -0.125 4.125 23 C -0.156 4.156 24 C 0.517 3.483 25 O -0.538 6.538 26 N -0.716 5.716 27 C 0.515 3.485 28 O -0.524 6.524 29 H 0.261 0.739 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -16.588 1.110 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.081 4.081 11 N -0.207 5.207 12 C -0.089 4.089 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.035 4.035 16 C -0.154 4.154 17 C -0.019 4.019 18 N -0.353 5.353 19 C -0.005 4.005 20 C 0.002 3.998 21 H 0.116 0.884 22 C -0.163 4.163 23 C -0.196 4.196 24 C 0.303 3.697 25 O -0.415 6.415 26 N -0.372 5.372 27 C 0.302 3.698 28 O -0.399 6.399 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.455 -16.168 0.680 19.826 hybrid contribution 0.547 1.293 0.596 1.525 sum 12.002 -14.875 1.276 19.156 Atomic orbital electron populations 1.69960 1.05970 1.26634 1.50457 1.24951 0.94811 0.99092 0.95182 0.86635 0.79821 0.83619 0.78185 1.20574 1.21140 1.20006 1.21069 0.92726 0.90906 1.51162 0.93080 1.19118 0.93840 0.90117 0.97880 1.22661 0.97591 0.88825 0.99040 1.65072 1.11457 1.02254 1.41959 1.23312 0.97005 0.95363 0.93220 1.22575 0.96185 0.95709 1.01504 1.22286 0.96096 0.96902 0.99552 1.22145 0.91169 0.95063 0.95102 1.22651 0.95636 0.99184 0.97946 1.22192 0.96417 0.99664 0.83626 1.48311 1.08519 1.68180 1.10282 1.21820 0.82305 0.94059 1.02300 1.22184 0.97748 0.95626 0.84276 0.88450 1.22594 0.93446 1.03801 0.96454 1.22347 0.97523 1.04885 0.94876 1.20893 0.86175 0.75743 0.86930 1.90758 1.86814 1.47766 1.16181 1.46369 1.09308 1.69068 1.12476 1.21286 0.86211 0.76202 0.86117 1.90706 1.84576 1.49324 1.15277 0.92943 0.95715 0.96238 0.94939 0.92401 0.93032 0.89155 0.90779 0.91156 0.90622 0.90962 0.90052 0.87894 0.90719 0.91048 0.88859 0.90111 0.89367 0.88946 0.88075 0.87994 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.71 4.65 -27.89 -0.13 0.58 16 10 C 0.05 0.94 4.16 -3.82 -0.02 0.92 16 11 N -0.48 -8.38 5.03 -216.65 -1.09 -9.47 16 12 C 0.04 0.66 5.11 -1.65 -0.01 0.65 16 13 C -0.12 -1.58 7.09 -24.62 -0.17 -1.76 16 14 C -0.11 -1.38 6.18 -25.65 -0.16 -1.53 16 15 C 0.06 0.84 0.79 -132.18 -0.11 0.73 16 16 C -0.12 -1.27 6.33 -25.41 -0.16 -1.43 16 17 C 0.10 1.12 6.51 -2.98 -0.02 1.10 16 18 N -0.62 -7.62 2.80 -172.50 -0.48 -8.10 16 19 C 0.12 1.19 5.54 -4.04 -0.02 1.17 16 20 C 0.11 1.21 3.80 -67.01 -0.25 0.96 16 21 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 22 C -0.12 -1.00 6.70 -25.10 -0.17 -1.17 16 23 C -0.16 -1.38 6.86 -26.74 -0.18 -1.56 16 24 C 0.52 7.06 8.43 -10.85 -0.09 6.97 16 25 O -0.54 -9.74 18.03 5.56 0.10 -9.64 16 26 N -0.72 -9.47 5.28 -52.76 -0.28 -9.75 16 27 C 0.52 8.01 4.46 -11.14 -0.05 7.96 16 28 O -0.52 -9.94 16.58 5.56 0.09 -9.85 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.53 6.81 -51.93 -0.35 0.18 16 32 H 0.03 0.72 5.91 -51.93 -0.31 0.42 16 33 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 34 H 0.05 1.00 7.98 -51.93 -0.41 0.58 16 35 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.75 7.40 -51.93 -0.38 0.37 16 39 H 0.07 0.96 7.44 -51.93 -0.39 0.58 16 40 H 0.08 0.70 7.57 -51.93 -0.39 0.31 16 41 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.86 6.34 -51.93 -0.33 0.54 16 44 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.51 7.89 -51.93 -0.41 0.10 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.41 6.24 7.64 -40.82 -0.31 5.92 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -34.87 387.81 -10.27 -45.14 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.22 Total: 4.45 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.95 Total: 0.37 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -1.12 Total: -53.28 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.19 Total: -19.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.87 -10.27 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.788 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds